Gene
RNA
| Item | Value |
|---|---|
| gene id | prkcg |
| gene name | LOC105019084 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 10661090 ~ 10701728 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: protein kinase C alpha type isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036968582.1 | False | 3572 | mRNA | 0.49 | 17 | 10661090 | 10701728 |
| XM_036968583.1 | False | 3494 | mRNA | 0.49 | 18 | 10661090 | 10701728 |
| TU255030 | True | 624 | lncRNA | 0.32 | 1 | 10700862 | 10701485 |
10,630,000
10,640,000
10,650,000
10,660,000
10,670,000
10,680,000
10,690,000
10,700,000
10,710,000
NC_048567.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520829 | LOC102782376 | coding | upstream | 56034 | 10431758 ~ 10605056 (+) |
| LOC110508924 | LOC106605777 | coding | upstream | 297417 | 10340929 ~ 10363673 (+) |
| LOC110508886 | LOC106605776 | coding | upstream | 346555 | 10306848 ~ 10314535 (+) |
| LOC110520828 | NA | coding | upstream | 354891 | 10295464 ~ 10306199 (+) |
| LOC110508875 | LOC106605773 | coding | upstream | 374001 | 10278141 ~ 10287089 (+) |
| LOC110520833 | LOC106575226 | coding | downstream | 14885 | 10716613 ~ 10767669 (+) |
| cacng8b | LOC106576929 | coding | downstream | 67910 | 10769638 ~ 10827279 (+) |
| LOC110508993 | LOC106576906 | coding | downstream | 175068 | 10876757 ~ 10878635 (+) |
| LOC110509020 | LOC106605819 | coding | downstream | 211353 | 10913081 ~ 10925718 (+) |
| isoc2 | isoc2 | coding | downstream | 240053 | 10941781 ~ 10944125 (+) |
| G223350 | NA | non-coding | upstream | 9947 | 10650821 ~ 10651143 (+) |
| G223349 | NA | non-coding | upstream | 11347 | 10649316 ~ 10649743 (+) |
| G223344 | NA | non-coding | upstream | 19771 | 10635605 ~ 10641319 (+) |
| G223339 | NA | non-coding | upstream | 23740 | 10625637 ~ 10637350 (+) |
| G223283 | NA | non-coding | upstream | 146452 | 10514385 ~ 10514638 (+) |
| G223255 | NA | non-coding | downstream | 1185 | 10702913 ~ 10704072 (+) |
| G223385 | NA | non-coding | downstream | 76155 | 10777883 ~ 10779973 (+) |
| G223381 | NA | non-coding | downstream | 125661 | 10827389 ~ 10829316 (+) |
| G223414 | NA | non-coding | downstream | 145917 | 10847645 ~ 10847885 (+) |
| LOC110508845 | LOC106605771 | other | upstream | 384917 | 10267749 ~ 10276176 (+) |
| sphk2 | LOC106605743 | other | upstream | 747992 | 9900809 ~ 9916529 (+) |
| G222353 | LOC106573525 | other | upstream | 979338 | 9679760 ~ 9681752 (+) |
| G222345 | LOC106594812 | other | upstream | 1049951 | 9606305 ~ 9611139 (+) |
| G223418 | u2af2 | other | downstream | 151974 | 10853702 ~ 10856200 (+) |
| G223434 | LOC106595748 | other | downstream | 248421 | 10950149 ~ 10952739 (+) |
