Item | Value |
---|---|
gene id | LOC110520833 |
gene name | LOC106575226 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048567.1 |
NCBI id | CM023221.2 |
chromosome length | 85311031 |
location | 10716613 ~ 10767669 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: uncharacterized protein LOC100704457 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036968585.1 | False | 1707 | mRNA | 0.54 | 6 | 10716613 | 10752817 |
TU255198 | False | 763 | TUCP | 0.55 | 5 | 10716651 | 10750403 |
TU255222 | False | 7435 | lncRNA | 0.42 | 6 | 10753518 | 10767616 |
TU255236 | False | 9685 | lncRNA | 0.44 | 8 | 10753518 | 10767669 |
TU255234 | False | 6844 | TUCP | 0.42 | 6 | 10753617 | 10767669 |
TU255248 | False | 6422 | TUCP | 0.51 | 6 | 10753617 | 10767669 |
TU255211 | False | 5613 | lncRNA | 0.44 | 6 | 10756130 | 10767669 |
TU255216 | False | 3737 | lncRNA | 0.43 | 4 | 10756130 | 10767669 |
TU255218 | False | 2658 | lncRNA | 0.41 | 3 | 10756130 | 10767669 |
TU255219 | False | 5783 | lncRNA | 0.44 | 6 | 10756130 | 10767669 |
TU255223 | False | 6117 | lncRNA | 0.45 | 6 | 10756130 | 10767669 |
TU255228 | False | 5994 | lncRNA | 0.45 | 6 | 10756130 | 10767616 |
TU255229 | False | 3205 | lncRNA | 0.42 | 3 | 10756130 | 10767669 |
TU255237 | False | 1680 | lncRNA | 0.51 | 2 | 10756130 | 10767669 |
TU255243 | False | 5614 | lncRNA | 0.44 | 5 | 10756130 | 10767616 |
TU255254 | False | 6077 | lncRNA | 0.44 | 6 | 10756130 | 10767669 |
TU255265 | True | 5354 | lncRNA | 0.44 | 9 | 10756130 | 10767669 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
prkcg | LOC105019084 | coding | upstream | 14885 | 10661090 ~ 10701728 (+) |
LOC110520829 | LOC102782376 | coding | upstream | 111557 | 10431758 ~ 10605056 (+) |
LOC110508924 | LOC106605777 | coding | upstream | 352940 | 10340929 ~ 10363673 (+) |
LOC110508886 | LOC106605776 | coding | upstream | 402078 | 10306848 ~ 10314535 (+) |
LOC110520828 | NA | coding | upstream | 410414 | 10295464 ~ 10306199 (+) |
cacng8b | LOC106576929 | coding | downstream | 16821 | 10769638 ~ 10827279 (+) |
LOC110508993 | LOC106576906 | coding | downstream | 123979 | 10876757 ~ 10878635 (+) |
LOC110509020 | LOC106605819 | coding | downstream | 160264 | 10913081 ~ 10925718 (+) |
isoc2 | isoc2 | coding | downstream | 188964 | 10941781 ~ 10944125 (+) |
foxj2 | LOC106605824 | coding | downstream | 192808 | 10945625 ~ 10947532 (+) |
G223255 | NA | non-coding | upstream | 12541 | 10702913 ~ 10704072 (+) |
G223350 | NA | non-coding | upstream | 65470 | 10650821 ~ 10651143 (+) |
G223349 | NA | non-coding | upstream | 66870 | 10649316 ~ 10649743 (+) |
G223344 | NA | non-coding | upstream | 75294 | 10635605 ~ 10641319 (+) |
LOC110520833 | LOC106575226 | non-coding | downstream | 701 | 10716613 ~ 10767669 (+) |
G223385 | NA | non-coding | downstream | 25066 | 10777883 ~ 10779973 (+) |
G223381 | NA | non-coding | downstream | 74572 | 10827389 ~ 10829316 (+) |
G223414 | NA | non-coding | downstream | 94828 | 10847645 ~ 10847885 (+) |
G223421 | NA | non-coding | downstream | 104736 | 10857553 ~ 10857877 (+) |
LOC110508845 | LOC106605771 | other | upstream | 440440 | 10267749 ~ 10276176 (+) |
sphk2 | LOC106605743 | other | upstream | 803515 | 9900809 ~ 9916529 (+) |
G222353 | LOC106573525 | other | upstream | 1034861 | 9679760 ~ 9681752 (+) |
G222345 | LOC106594812 | other | upstream | 1105474 | 9606305 ~ 9611139 (+) |
G223418 | u2af2 | other | downstream | 100885 | 10853702 ~ 10856200 (+) |
G223434 | LOC106595748 | other | downstream | 197332 | 10950149 ~ 10952739 (+) |
LOC110537149 | LOC106591073 | other | downstream | 241241 | 10982780 ~ 10995885 (+) |
G223424 | NA | non-coding | downstream | 100658 | 10868327 ~ 10872184 (+) |