cacng8b (LOC106576929)


Basic Information

Item Value
gene id cacng8b
gene name LOC106576929
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10769638 ~ 10827279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968589.1
TAactggaggggagggggagacgcATTCTCACCGAGTACACACACGCATTGGCTACATCTACTGTAGACAAATTCCTGTTTCACTGATGTGTCTCTGTATCCGCTGTATATCTGTTAAAACCATTTCATCATGGCTGAGTTATGTTTAGTAGAGAAATGACATACAGTTTCTTACACGGTATTTTTTTCACGTAATTTTGTCTTATTACCCCCCTGTTTGTTATTTCGAGGCCGTTATTTGtcgtccaccccctctctctctttttctctccatctccttttccTCTCTTTGGGAGTGTGACGGTCTTCGAATAAGCTTCTGAAATAATAAGCCGGCAGTAGCCCAACTACCATGTCCTCCTCAGTGACTGCTTCCTGTGAATAAGAGGACCAGAGCGAGAGCGTCCAATCACAATCAAGAGCTTCCACCAGCACATCtttccagtgagagagagagaaagagatagaggccaaagagagagagagagaaacgagtgcaggaaggagagggggagagagtgagaacagTCGATGGATGCTGTCCGGATTGAGGGGACAGCGCATTCTTCATTAACGAGGAAAAGAAAGATTTCAAAATGGAGTCGAAGGATAGAAACTCGGCGGCAGGGATGGTTTGTGAGAAGGGGATCCAGATCCTCCTCACCACCGTGGGGGCCTTTGCAGCCTTCTGCCTGATGACGGTTTCTATAGGGACGGACTACTGGCTGTACTCTCGTGCCTCCATCTGCAACAGCACCCGCAACCACTCGGACGACCCCCACAACAAGGACAAGAAGGACCCCGGCGCCCTCACCCACTCTGGCCTCTGGAGGATCTGCTGCCTGGAAGgggTGAAGAggggagtgtgttctcagatcAACCACTTCCCTGAGGATGCTGACTTTGACCATGATGGGCCAGAGTATGTTCTACgtatgGTCAGGGCTTCCAACATCTTCCCTATCCTCAGTGCTATCCTGCTGTTGATGGGAGGGGTGTGTATCGGTCTCAGTCGCTTCTATAAGCACAAGAGGAACATCGTCCTGGGAGCAGGCATTCTCTTTGTGGCTGCAGGTCTGAGCAACATCATCGGTGTGATCGTGTACATCTCTGCAGCGCTGGGAGACATCTCCCCTAAGAAGGACGAGGACAAGAAGTGGCAGTACAGCTACGGCTGGTCCTTCTACTTCGGAGGCCTGTCCTTCATCATGGCTGAGATGGTGGGCGTTCTGGCCGTCAACATCTACATCGAAAAGAACAAGGAGCTTCGCTGCCGCTCACGCACTGACATCTTCAAGGGGACCACGCACGCCATGCTCCGCCTACCCAGCTACCGCTTCCGCCGTCGCTCCCGCTCCTCCTCCCGCTCTACTGACCCCTCACGCTCCCGAGACCCCTCGCCGGTGGGGGGAGGCGGGGGGAAGAACTTTGGCCTGCCCCCCTCGGCCATGCTCTCCCAGGGGCCCATGTCTGTGGCCACGCTGCCCAACCCTCACTCTCGCTCCCACACCACCCTGGCGGGGGGCGACATCTCCCTCTACACTCTGTCCCGTGACCCCAAGCTGGCTGGCCTGCCCCCCATGTACGGCACCGTGGACCGCGCCACCCTCTACCAGCTCCACAACTGCTTCCCCAAGgacgggggaggagggggaggagggggtgtgatgaTGAGCGGCACACTGCCCTCTCTGAAGTCTCACAACCCCTCGCTGTCCCAGAATTCCTCCAACTCCAACGCACCCATGGGCAACTCGGTGGGCTCGGGGCCCCCACCCTTCTCCTCGTCCACGgtggagagagaacgagggatggGAACGCTGGACAGGctaaagggagatagagagagcaacTCCAATACGCTCAACAGGAAGACAACACCCgtgtagagaggagggggggggggacagggaaggaagagagagagagcaactccAATACGCTCAACAGGAAGACAACACCCgtgtagagaggagggggggagagag
>XM_036968594.1
TAactggaggggagggggagacgcATTCTCACCGAGTACACACACGCATTGGCTACATCTACTGTAGACAAATTCCTGTTTCACTGATGTGTCTCTGTATCCGCTGTATATCTGTTAAAACCATTTCATCATGGCTGAGTTATGTTTAGTAGAGAAATGACATACAGTTTCTTACACGGTATTTTTTTCACGTAATTTTGTCTTATTACCCCCCTGTTTGTTATTTCGAGGCCGTTATTTGtcgtccaccccctctctctctttttctctccatctccttttccTCTCTTTGGGAGTGTGACGGTCTTCGAATAAGCTTCTGAAATAATAAGCCGGCAGCCCAACTACCATGTCCTCCTCAGTGACTGCTTCCTGTGAATAAGAGGACCAGAGCGAGAGCGTCCAATCACAATCAAGAGCTTCCACCAGCACATCtttccagtgagagagagagaaagagatagaggccaaagagagagagagagaaacgagtgcaggaaggagagggggagagagtgagaacagTCGATGGATGCTGTCCGGATTGAGGGGACAGCGCATTCTTCATTAACGAGGAAAAGAAAGATTTCAAAATGGAGTCGAAGGATAGAAACTCGGCGGCAGGGATGGTTTGTGAGAAGGGGATCCAGATCCTCCTCACCACCGTGGGGGCCTTTGCAGCCTTCTGCCTGATGACGGTTTCTATAGGGACGGACTACTGGCTGTACTCTCGTGCCTCCATCTGCAACAGCACCCGCAACCACTCGGACGACCCCCACAACAAGGACAAGAAGGACCCCGGCGCCCTCACCCACTCTGGCCTCTGGAGGATCTGCTGCCTGGAAGgggTGAAGAggggagtgtgttctcagatcAACCACTTCCCTGAGGATGCTGACTTTGACCATGATGGGCCAGAGTATGTTCTACgtatgGTCAGGGCTTCCAACATCTTCCCTATCCTCAGTGCTATCCTGCTGTTGATGGGAGGGGTGTGTATCGGTCTCAGTCGCTTCTATAAGCACAAGAGGAACATCGTCCTGGGAGCAGGCATTCTCTTTGTGGCTGCAGGTCTGAGCAACATCATCGGTGTGATCGTGTACATCTCTGCAGCGCTGGGAGACATCTCCCCTAAGAAGGACGAGGACAAGAAGTGGCAGTACAGCTACGGCTGGTCCTTCTACTTCGGAGGCCTGTCCTTCATCATGGCTGAGATGGTGGGCGTTCTGGCCGTCAACATCTACATCGAAAAGAACAAGGAGCTTCGCTGCCGCTCACGCACTGACATCTTCAAGGGGACCACGCACGCCATGCTCCGCCTACCCAGCTACCGCTTCCGCCGTCGCTCCCGCTCCTCCTCCCGCTCTACTGACCCCTCACGCTCCCGAGACCCCTCGCCGGTGGGGGGAGGCGGGGGGAAGAACTTTGGCCTGCCCCCCTCGGCCATGCTCTCCCAGGGGCCCATGTCTGTGGCCACGCTGCCCAACCCTCACTCTCGCTCCCACACCACCCTGGCGGGGGGCGACATCTCCCTCTACACTCTGTCCCGTGACCCCAAGCTGGCTGGCCTGCCCCCCATGTACGGCACCGTGGACCGCGCCACCCTCTACCAGCTCCACAACTGCTTCCCCAAGgacgggggaggagggggaggagggggtgtgatgaTGAGCGGCACACTGCCCTCTCTGAAGTCTCACAACCCCTCGCTGTCCCAGAATTCCTCCAACTCCAACGCACCCATGGGCAACTCGGTGGGCTCGGGGCCCCCACCCTTCTCCTCGTCCACGgtggagagagaacgagggatggGAACGCTGGACAGGctaaagggagatagagagagcaacTCCAATACGCTCAACAGGAAGACAACACCCgtgtagagaggagggggggggggacagggaaggaagagagagagagcaactccAATACGCTCAACAGGAAGACAACACCCgtgtagagaggagggggggagagag
>TU255286
GTACACACACGCATTGGCTACATCTACTGTAGACAAATTCCTGTTTCACTGATGTGTCTCTGTATCCGCTGTATATCTGTTAAAACCATTTCATCATGGCTGAGTTATGTTTAGTAGAGAAATGACATACAGTTTCTTACACGGTATTTTTTTCACGTAATTTTGTCTTATTACCCCCCTGTTTGTTATTTCGAGGCCGTTATTTGtcgtccaccccctctctctctttttctctccatctccttttccTCTCTTTGGGAGTGTGACGGTCTTCGAATAAGCTTCTGAAATAATAAGCCGGCAGCCCAACTACCATGTCCTCCTCAGTGACTGCTTCCTGTGAATAAGAGGACCAGAGCGAGAGCGTCCAATCACAATCAAGAGCTTCCACCAGCACATCtttccagtgagagagagagaaagagatagaggccaaagagagagagagagaaacgagtgcaggaaggagagggggagagagtgagaacagTCGATGGATGCTGTCCGGATTGAGGGGACAGCGCATTCTTCATTAACGAGGAAAAGAAAGATTTCAAAATGGAGTCGAAGGATAGAAACTCGGCGGCAGGGATGGTTTGTGAGAAGGGGATCCAGATCCTCCTCACCACCGTGGGGGCCTTTGCAGCCTTCTGCCTGATGACGGTTTCTATAGGGACGGACTACTGGCTGTACTCTCGTGCCTCCATCTGCAACAGCACCCGCAACCACTCGGACGACCCCCACAACAAGGACAAGAAGGACCCCGGCGCCCTCACCCACTCTGGCCTCTGGAGGATCTGCTGCCTGGAAGgggTGAAGAggggagtgtgttctcagatcAACCACTTCCCTGAGGATGCTGACTTTGACCATGATGGGCCAGAGTATGTTCTACGTCTGAGCAACATCATCGGTGTGATCGTGTACATCTCTGCAGCGCTGGGAGACATCTCCCCTAAGAAGGACGAGGACAAGAAGTGGCAGTACAGCTACGGCTGGTCCTTCTACTTCGGAGGCCTGTCCTTCATCATGGCTGAGATGGTGGGCGTTCTGGCCGTCAACATCTACATCGAAAAGAACAAGGAGCTTCGCTGCCGCT
>TU255285
ACGCTCCCGAGACCCCTCGCCGGTGGGGGGAGGCGGGGGGAAGAACTTTGGCCTGCCCCCCTCGGCCATGCTCTCCCAGGGGCCCATGTCTGTGGCCACGCTGCCCAACCCTCACTCTCGCTCCCACACCACCCTGGCGGGGGGCGACATCTCCCTCTACACTCTGTCCCGTGACCCCAAGCTGGCTGGCCTGCCCCCCATGTACGGCACCGTGGACCGCGCCACCCTCTACCAGCTCCACAACTGCTTCCCCAAGgacgggggaggagggggaggagggggtgtgatgaTGAGCGGCACACTGCCCTCTCTGAAGTCTCACAACCCCTCGCTGTCCCAGAATTCCTCCAACTCCAACGCACCCATGGGCAACTCGGTGGGCTCGGGGCCCCCACCCTTCTCCTCGTCCACGgtggagagagaacgagggatggGAACGCTGGACAGGctaaagggagatagagagagcaacTCCAATACGCTCAACAGGAAGACAACACCCgtagagagagcaactccAATACGCTCAACAGGAAGACAACACCCgtggagggaacagggaaggaagagagagagagcaactccAATACGCTCAACAGGAAGACAACACCCgtgtagagaggagggggggggggacagggaaggaagagagagagagcaactccAATACGCTCAACAGGAAGACAACACCCgtgtagagagga

Function

NR:

description
voltage-dependent calcium channel gamma-8 subunit-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968589.1 False 1988 mRNA 0.56 6 10769638 10827121
XM_036968594.1 False 1985 mRNA 0.56 6 10769638 10827121
TU255286 False 1099 TUCP 0.50 5 10769673 10826411
TU255285 True 704 TUCP 0.62 3 10826515 10827279

Neighbor

gene id symbol gene type direction distance location
LOC110520833 LOC106575226 coding upstream 16821 10716613 ~ 10767669 (+)
prkcg LOC105019084 coding upstream 67910 10661090 ~ 10701728 (+)
LOC110520829 LOC102782376 coding upstream 164582 10431758 ~ 10605056 (+)
LOC110508924 LOC106605777 coding upstream 405965 10340929 ~ 10363673 (+)
LOC110508886 LOC106605776 coding upstream 455103 10306848 ~ 10314535 (+)
LOC110508993 LOC106576906 coding downstream 49675 10876757 ~ 10878635 (+)
LOC110509020 LOC106605819 coding downstream 85960 10913081 ~ 10925718 (+)
isoc2 isoc2 coding downstream 114660 10941781 ~ 10944125 (+)
foxj2 LOC106605824 coding downstream 118504 10945625 ~ 10947532 (+)
LOC110537149 LOC106591073 coding downstream 155699 10982780 ~ 10995885 (+)
G223255 NA non-coding upstream 65566 10702913 ~ 10704072 (+)
G223350 NA non-coding upstream 118495 10650821 ~ 10651143 (+)
G223349 NA non-coding upstream 119895 10649316 ~ 10649743 (+)
G223381 NA non-coding downstream 268 10827389 ~ 10829316 (+)
G223414 NA non-coding downstream 20524 10847645 ~ 10847885 (+)
G223421 NA non-coding downstream 30432 10857553 ~ 10857877 (+)
G223424 NA non-coding downstream 41206 10868327 ~ 10872184 (+)
G223441 NA non-coding downstream 73475 10900596 ~ 10900908 (+)
LOC110508845 LOC106605771 other upstream 493465 10267749 ~ 10276176 (+)
sphk2 LOC106605743 other upstream 856540 9900809 ~ 9916529 (+)
G222353 LOC106573525 other upstream 1087886 9679760 ~ 9681752 (+)
G223418 u2af2 other downstream 26581 10853702 ~ 10856200 (+)
G223434 LOC106595748 other downstream 123028 10950149 ~ 10952739 (+)
mfap5 LOC106575133 other downstream 209156 11036238 ~ 11041281 (+)

Expression


Co-expression Network