LOC110508947 (LOC106576934)


Basic Information

Item Value
gene id LOC110508947
gene name LOC106576934
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10831566 ~ 10847242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589877.2
ccatgttagcaccaggtataaacatgtccctctctctctcttcctttctctctctctccctcccctctctctctccaacactccCAACTTTCTCCCCTCTATTAAGTTCCAAGCTTCTTTCAATCTGAAGTGAACAACATATTCCAAACAGGGGGTGTTCCAGAAAAAACATACGCCATCCTTCCTCGTCacccagtcctctcctcctccacctttctCTCATCACTCCCTTTCTCCCATCTTGTCTACTCCCATACTGAaccatccatctctttctcccctttcctcctcccattCTCCATCCCCACATCCACCTCTGAACTGCTGTTATCTGTGTCTCTACCTTCCTTCAGTCTTCAACCTTCCTTTCTTCTTTTTGGGGTTCACCCCCCTTCAATAAtttccctgcttctctctcttcactctctttcccgtcctcttccctctttccctcccttcctctctccatccgaCCTCTCTCGGCCTCTGGTAGAGGTCACCATGTGGGCCAACTACATTGTCCAGCCAGAGGAGGATGGCCGTATGGGGGTGGTAGGAGCTGGGGCCCATGGGGGCCTGGCCGGCCTGGCAGGGGTGAAGGGAGGGGGGCGTGCTACGAGGCGGACCCCTAGGATGAGTGACAGCCAGGAGGGGAAGATCAAGCTGGCGTTCTTTGTGGCCATTGTGGGTGTGACCCTGACAGTGCTGGGGGTGGGAACAGAGTTCTGGGTGGAGCTGGCCACGCCCAAGACCTGGAGTAACAACCAGACGTGTCAGACAGCCCACTACGGCCTGTGGAAGGGGTGTACCCGCACCCTGTGGGTGGACGACATCGaccccgagagagagagctgcgGCCCCGCCGATCTGCCCGGAGAATCCAACTGCACTTACTTCAAATTCTTCACCAATGGACACAACGCAGTCATATTTAAGAAGACGACCCACAAGAacctGAACATAGCGGCTGCTATCCTAGCAATGATAGCTCTGTCTATGATGGTGATGGGAGCAATCTGTATCACCATGTCCCTCAGTAAAGGAGTGCCCTTCTTCCTCAAGCCCGCCTCCTTCTGCTTCATCCTATCAGgtCTACTGGTCCTGCTGTCTATACTGGTGTTTCACCAGTCAGTGCTGGCCCTGTTGTCATCTGACCACTCCATACCGCTCCACCACGAGCTCTCCTGGTCCGTGACCTGTGTGGGCTTCGCTGGGGCCATCCTCATCATGGGGGGGATCCTTTTCCTGATCCTCTCCCTCCCCTATAGCTCCTGGGAGAAATGTCTGCCTCAATGCAACAGCAGCACTACCTAGCACAATGGAGGCCCAAAAGAGGCCCAAAAGCACATAACTGGGGGAAAAATGGGGGAaaaatgtttagttttatatCAAGATTGTAAtcaaactccagtcctcgagggaaGCACTGTCTACTGGCTTTAGTTGTCAATTATAAATCAGACACTGATCAGAACAACTACAACCAGTAGACACTGATGCCACCCAGGAGTTGAGTTGGAGACCCCTGTTTATATTGTCAGTCTGCTGGCTTTAGTTGTCAGGTATAAATCAGACACTGATCAGAACAACTACAACCAGTAGACACTGATGCCACCCAGGAGTTGAGTTGGAGACCCCTGTTTATATTGTCAGTTATATTGTCAAACTAGACTGAAAGACTGACTAACTTGTAGGTCGACACAGTGTTTACTTAATGCAATAACAATGATGCTCACTAACTGTGCCTAGAACTCTACAAGTCTGCCCTAAAGCCTGCGACCTTACCAGAAAACACTATGTAGACCACAACTTCCCCACTTTTTGGCATCATGACCAACCTATATCTTTTAGAAGTTTCTGATGGCCTACCAAAGAACAAGCAATGTTTCTAAGCAGAACCCGGTCTTTACCAGGGGGGTAATGCTGGgttaaacaaaaccaaagcatggattgatGTCTTAACATGTCCATTGACTGCtaacagggtaaggaaaccaatatgtcatttAGTTATTGATCTAGTTCTTTAAACACAACGCCAACCACACTGTAGTTGTAGATAAAGACCCAGCAGGGTGTAGCATCCTGTCTGTACTATGAACTGTGTACTAACCATTACTTATTGATAGTGTTACTTAGCCAATTAAATCACATGGGGGAGGGGCTGCTATGGGTAGGTCACTACCGTTGCTAAGGGAGGAGATACTTTATTGTTTCCAGGAAGTGGCACAGCCATCCCTGCTACATGAAACGCCTTGCAGGTTGTCACTATTAATCTATTATGAATGATTATGACGCCTTACACTTAATACCTAGAAATAATATATTCTCTATTTATTATCTACACATTGTCCACATGAATGAATGCTGTTTTTAAGTAAGAATGTGTGAATGATTTAATGTATGTATGGAAATATTGTATAGACTCACTTTACAAGCACAGCTCTGTATATAAAATATgtgtttgtattttatttataccTGCACACTGTAGCCTTTTGTTCAAGCTTAGGGgggtgtttttagtttttagctTATTCAAACCCTTTTTTTCATCATGTGTTTTATTTGTCTTAATAAAGCCCACCTTGTCTTTCTCTACCTACATGTTTGTTTGGGGAAAACCACATTGTGCCTAAATGGTCCTATGATCATATGTATGTCTCACTGGGTTTGCTTTTGAAATAAATAGATTTGACATAAGAAACGCTCTCA

Function

NR:

description
voltage-dependent calcium channel gamma-6 subunit-like

GO: NA

KEGG:

id description
K04871 CACNG6; voltage-dependent calcium channel gamma-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589877.2 True 2715 mRNA 0.47 5 10831566 10847242

Neighbor

gene id symbol gene type direction distance location
pitpnc1b LOC106593696 coding downstream 418494 10396551 ~ 10413072 (-)
LOC110508823 josd2 coding downstream 602157 10226896 ~ 10229409 (-)
LOC118945753 NA coding downstream 639795 10191357 ~ 10191771 (-)
flcn LOC106577129 coding downstream 651317 10167784 ~ 10180249 (-)
LOC110508798 LOC106577146 coding downstream 667599 10160334 ~ 10163967 (-)
LOC110508966 u2af2 coding upstream 6460 10853702 ~ 10865262 (-)
LOC110508957 LOC106576897 coding upstream 18293 10865535 ~ 10876129 (-)
LOC110508973 LOC106576890 coding upstream 31467 10878709 ~ 10895912 (-)
si:ch211-149k23.9 LOC106591404 coding upstream 80753 10927995 ~ 10936251 (-)
LOC110537203 LOC106576885 coding upstream 90200 10937442 ~ 10941795 (-)
G223688 NA non-coding downstream 2256 10827408 ~ 10829310 (-)
G223652 NA non-coding downstream 51590 10777319 ~ 10779976 (-)
G223627 NA non-coding downstream 133004 10697259 ~ 10698562 (-)
G223601 NA non-coding downstream 170827 10660308 ~ 10660739 (-)
G223600 NA non-coding downstream 171331 10659887 ~ 10660235 (-)
G223702 NA non-coding upstream 1166 10848408 ~ 10848704 (-)
G223703 NA non-coding upstream 1704 10848946 ~ 10849353 (-)
G223707 NA non-coding upstream 55319 10902561 ~ 10902795 (-)
G223710 NA non-coding upstream 62994 10910236 ~ 10910496 (-)
G223711 NA non-coding upstream 64029 10911271 ~ 10911708 (-)
LOC110508724 prpf31 other downstream 808363 10019313 ~ 10024005 (-)
G223070 NA other downstream 816674 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 828672 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1148195 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 1158127 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 223704 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 324878 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 428675 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 880120 11727284 ~ 11741584 (-)
G224869 NA other upstream 905609 11752851 ~ 11753680 (-)

Expression


Co-expression Network