XLOC_021586 (prim1)


Basic Information

Item Value
gene id XLOC_021586
gene name prim1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17839187 ~ 17848907 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042846
ATTAACGCGGTGCGTGACCAACGAACAAGGACCGATTTCGTCATTTCCTATTTACGTTAATTTTCCCGCGCTGGTTGTAGCTGTCATTGAGGATCAACAATACTTAACGAATAAACATGCCAACCTCAGATTATGATTCAGCTTGTTTGCCGGATTTGTTACCGCTTTATTACCGCAGACTTTTCCCTTTTTCACAGTACTTTCGCTGGTTAAGTTATGGCGGTGTGTCCAAAAACTACTTCCAGAACCGTGAATTCTCCTTCACGTTAAAAGATGACATCTATGTGAGATATCAGTCCTTCAGCTCTCAGAATGAGCTGGAGAAGGAGATGCAGAAAATGGTTCCTTACAAGATTGATATTGGAGCAGTCTACAGCCACAGGCCCAGTCAACACAACACTGTGAAGTCTGGAACCTTCCAAGCCCTGGAAAAGGAACTGGTGTTTGACATTGACATGACAGACTATGATGATGTCAGACGTTGCTGCAGTGCTGCTGACATCTGCTCGAAGTGCTGGACTCTAATGACCATCGCTATCCGCATTCTGGACCGGGCTCTTCGGGAGGACTTTGGTTTCCACCATCTCCTGTGGGTGTATTCGGGCAGGAGAGGAGTGCATTGCTGGGTTTGTGATGATGCCGCTAGAAAGCTTTCAGTGGCGGCGAGGTCTGCCGTGGCTGAATATCTCAGTTTAGTCAAGggtggCGAGGAGACTTTGAGAAAAGTTGTGCTGTCAGATCCAATCCATCCTTTCATAAGtcAATCTCTGTCTGTAGTGGAGCACTATTTCCCACAGTACGCCATTGTGGATCAAGACATATTGGGCAATAAGGAGAGTGTGGACAAAGTGCTCGCTCTTCTGCCGGAAGATATCAAAAAAGATCTAATCGAATATTATCAGAATCACAAGGAACCGATGAAGCGATGGGACAGACTACGCCAACTGGTCGACCACAAAAagTCGAGTAGCAAGAAGGGAGGCCAGTACTATGATAAGGAGATCATGCTGCAGTACTGTTACCCACGTCTGGATGTCAATGTCAGTAAAGGAGTCAACCATTTACTGAAGAGCCCCTTCAGCGTTCATCCCAAGACAGGTCGAATCTCTGTTCCAATTGATTTGAAAGAACTGGATACATTTGATCCTTTTGAGGTTCCTACAATCAGTCTGATCTGTAGGGAGCTGGAGAAACCCAGAGCAGATGAAGCAGAGGATGAGGACGTAAAGGACAAGGAGAATGAACAAGAAGCTGCAGAGCGACGCAGAATCAGAGACTACAAGCGCACCAGCCTGGCCAAATATGTGAAGGTCTTAGATCGCTTTCTGGATTCAATGGCTCGATCTCGCAAAGGAGAGATGCTGAAGAAGAGTGATCTTCAGAAGGATTTTTAAGGCAGAAGAGCTGTGACATCAATAACAACAGCCCATCTGCTTCTGAAGAGATGGACACTTTACTTCTCTGAACCATATCTTGAGGGATCAAATGATGTATGAAACAATGccatttatttttctgtaataaCTGCTCCTTTACTTTTCTAATAGAAATATTTCCTTTTTCAATTGTAAATCAGATTTAGTTTTCACTATTTTTTCCACCAGCTTATTAAACagaaatacacaataaaaatttgtataaaa
>TCONS_00042847
ATTTGTTACCGCTTTATTACCGCAGACTTTTCCCTTTTTCACAGTACTTTCGCTGGTTAAGTTATGGCGGTGTGTCCAAAAACTACTTCCAGAACCGTGAATTCTCCTTCACGTTAAAAGATGACATCTATGTGAGATATCAGTCCTTCAGCTCTCAGAATGAGCTGGAGAAGGAGATGCAGAAAATGGTTCCTTACAAGATTGATATTGGAGCAGTCTACAGCCACAGGCCCAGTCAACACAACACTGTGAAGTCTGGAACCTTCCAAGCCCTGGAAAAGGAACTGGTGTTTGACATTGACATGACAGACTATGATGATGTCAGACGTTGCTGCAGTGCTGCTGACATCTGCTCGAAGTGCTGGACTCTAATGACCATCGCTATCCGCATTCTGGACCGGGCTCTTCGGGAGGACTTTGGTTTCCACCATCTCCTGTGGGTGTATTCGGGCAGGAGAGGAGTGCATTGCTGGGTTTGTGATGATGCCGCTAGAAAGCTTTCAGTGGCGGCGAGGTCTGCCGTGGCTGAATATCTCAGTTTAGTCAAGggtggCGAGGAGACTTTGAGAAAAGTTGTGCTGTCAGATCCAATCCATCCTTTCATAAGtcAATCTCTGTCTGTAGTGGAGCACTATTTCCCACAGTACGCCATTGTGGATCAAGACATATTGGGCAATAAGGAGAGTGTGGACAAAGTGCTCGCTCTTCTGCCGGAAGATATCCTTTCATAAGCAGTATATTGTTATAATGACACCAAGATTTTGATTGCTGGTACCAATACTAGGAAAAAATTCAGTCTCAGTATTCATCTACTATTCAGTACTATTCATCTGAAATACTGAGGGGAAAAACTTATTTGCTTGtttcaaaataataattgaaaaagtTAATCAATGCAAAAGTAATCAGAAGTAACAAATACACTGAAATGTAGAAGtaatcttttaatattttaaatgaggtaAACT

Function

symbol description
prim1 Predicted to enable DNA primase activity. Predicted to be involved in DNA replication, synthesis of RNA primer. Predicted to act upstream of or within DNA replication. Predicted to be part of alpha DNA polymerase:primase complex. Is expressed in several structures, including blastodisc; head; hematopoietic system; nervous system; and pectoral fin musculature. Orthologous to human PRIM1 (DNA primase subunit 1).

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:1990077 primosome complex cellular_component
GO:0005658 alpha DNA polymerase cellular_component
GO:0003896 DNA primase activity molecular_function
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0016740 transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-990603-6 Predicted to enable DNA primase activity. Predicted to be involved in DNA replication, synthesis of RNA primer. Predicted to act upstream of or within DNA replication. Predicted to be part of alpha DNA polymerase:primase complex. Is expressed in several structures, including blastodisc; head; hematopoietic system; nervous system; and pectoral fin musculature. Orthologous to human PRIM1 (DNA primase subunit 1).

Ensembl:

ensembl_id ENSDARG00000040163

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042846 False 1643 mRNA 0.44 13 17839187 17848907
TCONS_00042847 True 968 lncRNA 0.42 7 17839340 17842760

Neighbor

gene id symbol gene type direction distance location
XLOC_021585 rnd1a coding upstream 23934 17800717 ~ 17815253 (+)
XLOC_021584 dre-mir-124-5 coding upstream 55646 17783413 ~ 17783541 (+)
XLOC_021583 CR381647.3 coding upstream 56143 17782508 ~ 17783044 (+)
XLOC_021582 NA coding upstream 62842 17770424 ~ 17776345 (+)
XLOC_021581 CR407550.1 coding upstream 180085 17656836 ~ 17659102 (+)
XLOC_021587 naca coding downstream 16647 17865554 ~ 17876777 (+)
XLOC_021588 CR381647.1 coding downstream 24619 17873526 ~ 17873598 (+)
XLOC_021589 si:ch73-390p7.2 coding downstream 30062 17878969 ~ 17881328 (+)
XLOC_021590 CU234171.1 coding downstream 50319 17899226 ~ 17907404 (+)
XLOC_021591 chia.4 coding downstream 77372 17926279 ~ 17933143 (+)
XLOC_021579 BX649300.4 non-coding upstream 337759 17501314 ~ 17501428 (+)
XLOC_021595 CR352232.1 non-coding downstream 280953 18129860 ~ 18132323 (+)
XLOC_021597 NA non-coding downstream 285559 18134466 ~ 18136294 (+)
XLOC_021598 CR339055.1 non-coding downstream 440167 18289074 ~ 18289201 (+)
XLOC_021600 NA non-coding downstream 839447 18688354 ~ 18691482 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_04936808_04943256 PRIM1 coding CI01000001 null 4936808 ~ 4943455 (+)