LOC110508957 (LOC106576897)


Basic Information

Item Value
gene id LOC110508957
gene name LOC106576897
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10865535 ~ 10876129 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968625.1
TCTCCCTTAGGTAACCGGAAATGACGGCAAAGGACGTAAACAAGACTTGTAAAATAAACGCTAAATTGTTATTGTTCTAGCTAGGTACGAAAGTGGACAGAATGAACGGGATTTACATATGAAATACGGTGTTATAACGACTGAATAACGGGTGCACGAGATGCAGGAGGGAAATATTAATGACGCTTTGCCTACCTCCAAGAACCACACAGGCTCCCACCCCATGCAGACTCTGAAGAATGAGGATGCCTATGAAATCTCCATTCCCTTTGAGGAGAACAACTTTGAGCAGCAAGGCTTCTTCAATCAGAATGAGCAGAGTTTTGAAGagtCGCCCCCTCCCTCGGGTGCCCCCCCACCAGGCAGCTCGTACCTGCTGATAACCAACCTGCGGACGCAGCTGCAGATCTCCCTGGAGAAGAACTCGTGGCTGCACAAACGCATCGAtgacctggaggaggagagggacttCTTGCGTTGCCAGCTGGACCGCTTCATTTTCTCTACCAAGACCCAAGGCCATCAGAACCAGGGCCCCTGCGAGAGCCAGTACAGCAACGGCTATGACTCTAGACGTTTTGAATGGAAgccgaggagagagggggagcggccAGCTGAGCAGAAGTCCGAGTCACAGCGTTTCACATCTCGTCAGATATTCCAGCGAAGACCATCCCCCACTGCCATGGCCCCACCCAAAAACCACACTTCCAGCACGATAGCCAATCAGATGGCCGCGATGAGCTCGATGTTCAGCTCCGGGGCCTCCCAGAGCCTCTTGCAGGGGCACAGCAGTGGCAGTAGCAGCGCTATTAGAGCCACCATGAGTGACATGAATGCACACGGGAGCGTAGGGCCAGATTCCCTGTCCCTCCTGGGGGAGGCCGAGGAGTTCCTGGAGCAGGATGGCTACATGAACGAGGAGGAAATGATTTCAGGAGAGGAGGTGATGTCAGAGGGCATGAGCAGCGGTGGGCACCCAGGGATGAAGAGGAGGCGGGTCTTCCGATTCaccagggagaggcagagagTCAAAGACGCTGCAGGGGTTCTGTTTCGCTACAAGAAGATCCTGTTGACCTACCAGCGGCTGAAGAACATGTCTAAGGCCTTTCAGATCCACGGCGTAGACCGCAACACGGTGGCCTCCACCACGCCCATCGCTGAGATGCTGCTGGTGGCCCCGGAGAAGGTGGCGGAGGTGGGCGAGTTTGACCCGTCCAAGGAGAAGCTGCTGGATTACGCACGGCGCTGCTACGTTGCCCTAGACGAGGAGACGCTAAGCAGGGTGCAGGCCCTGAAGAAGAACAACCTGCTACTACCCATCTCCTACAGGTTGAAAGGAGGAGAGGATTCTCTTAAAGAGAAGGAAACTCACGCGACCACAAACTGAACAAAGCAAAGAGTAGTTGCACACTCTATTGCTCAGATTCAATCCTTTAGTAGAATCATTCCAGTGTTCTGTCAGAAAGCTTCCAGGTTCTGAAACAAAGGAAGTTAGCTAGCTGACTGACCACTGGTGTTGTGTCTGCACCAGAACAACAGAATAAGCAGATATTCTTTGCTTTGGAAGAAGGATGGGGACAGTTTTGGGGACAGTTCTACTGTGAGGCTAAGCTGTTGCACCACAAATACatcactttttttttgttgcaccaGAATATATTCTGTCACTGTAAAGTGCCACTGTAGCATACAGTTGTGAGATGTGTCATTTGACTGAAGTGTGGTGTAGTATAACATCACGTACCCTTTGTACTGTGCTACGAAGATGAGTTTTTTACTATAATAGTAGTACGATTTACTGTGCTATTTCACCATCAGTTGAGATTTGTGCTTTCTTTTTTCAGTCCTCTACTGCAATACTTTGTTTGCTTGGGAATAATTGATTACAATTAGATTGCATACTATTAGGTTTCTCTTTTTTGTGTTCCAATAAAGCTCAGTGATTTCCACAAAAGGGACAAAAtacaaaatgttgatttttatTTGAACATGTCTATGTAAATCAATATCAATCACCAGTTCCCCATTACAATTGCATGTGAAATTAACTCTTGTTGGTCAGTTATTTAGACAGAGCTGTTGTTGAACTCAATAATGATGTTAAAAAAACAATAGCAGTAGTATTGGCGATGGTGTAATATAgtggtatattgtgtgtgtgttatactgaAACTGGTACAAGGAATTGCTGAGACACCAGGTTGTCTGAGTGTGTGAAAGGGTACCTCTCACTTTAAACTTCATGTCTTACTTATTCACAACACAAACTCTCCCAGGGACGGGTATCAGTGTGTACAACTGCTGAAATCATGTTATGTTCCAACACCTTTTATACGGGTCAGAGATGTCATTTTGACTTTAATAAGGAACCAATCATTTACTGAAAGGTAGCGTACAACCTGTATCATTTAAGATACCGGTATCTGTGTGCAGAATTTCAAAAATGTTTAATATTGTATTTCTCTTCAAGAATAATGAGGAGTAGCCTGTAATTCAAAAACTGATAATGTTTGGTTGATTATACAAATTGTATggactgtaaaaataaaaatgccATTAAAGCATTTGATTTCTTAAAAAA

Function

NR:

description
coiled-coil domain-containing protein 106-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968625.1 True 2587 mRNA 0.46 9 10865535 10876129

Neighbor

gene id symbol gene type direction distance location
LOC110508966 u2af2 coding downstream 273 10853702 ~ 10865262 (-)
LOC110508947 LOC106576934 coding downstream 18293 10831566 ~ 10847242 (-)
pitpnc1b LOC106593696 coding downstream 452463 10396551 ~ 10413072 (-)
LOC110508823 josd2 coding downstream 636126 10226896 ~ 10229409 (-)
LOC118945753 NA coding downstream 673764 10191357 ~ 10191771 (-)
LOC110508973 LOC106576890 coding upstream 2580 10878709 ~ 10895912 (-)
si:ch211-149k23.9 LOC106591404 coding upstream 51866 10927995 ~ 10936251 (-)
LOC110537203 LOC106576885 coding upstream 61313 10937442 ~ 10941795 (-)
epn1 LOC106605818 coding upstream 74004 10950133 ~ 10968515 (-)
LOC110509040 necp1 coding upstream 166838 11042967 ~ 11051742 (-)
G223703 NA non-coding downstream 16182 10848946 ~ 10849353 (-)
G223702 NA non-coding downstream 16831 10848408 ~ 10848704 (-)
G223688 NA non-coding downstream 36225 10827408 ~ 10829310 (-)
G223652 NA non-coding downstream 85559 10777319 ~ 10779976 (-)
G223627 NA non-coding downstream 166973 10697259 ~ 10698562 (-)
G223707 NA non-coding upstream 26432 10902561 ~ 10902795 (-)
G223710 NA non-coding upstream 34107 10910236 ~ 10910496 (-)
G223711 NA non-coding upstream 35142 10911271 ~ 10911708 (-)
G223717 NA non-coding upstream 42560 10918689 ~ 10920990 (-)
G223723 NA non-coding upstream 68390 10944519 ~ 10944813 (-)
LOC110508724 prpf31 other downstream 842332 10019313 ~ 10024005 (-)
G223070 NA other downstream 850643 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 862641 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1182164 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 1192096 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 194817 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 295991 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 399788 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 851233 11727284 ~ 11741584 (-)
G224869 NA other upstream 876722 11752851 ~ 11753680 (-)

Expression


Co-expression Network