LOC110508973 (LOC106576890)


Basic Information

Item Value
gene id LOC110508973
gene name LOC106576890
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10878709 ~ 10895912 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021589917.2
TTGGACACTGAGAACAGCCTATCACTCCGATAGGCCAGAATAGGAATTCGGTCAACTGAGTCTAAATGAAACCACATCCCCTTCTTCAAACTCGCTGTAGGAGTAATTGATATCTTCTTCAAAGTAAACGACTGGAATATTACCCGTTTCAACAAATGATATACAAGTTTTGGGAACTAAAGAGACTCAAAGaatGGGCACCAACCCCCGCTGACATCAGCTTCATCTACAGCTAGAGCAGAGGAAGGGGCATCAAGGGGAATAGGGGGGTCATTTTCTGTAGAAATGGAGGAAGGACCATGTACAGTGGAGAGATGGATGAAATGGGAGTAGACATGAGTGTGAGAGGTCTAGATAAACTAGGTGGGTAGGTATTTATATATGAGGAAGAAGTGTATTGACAGACACACAGTTCATATACTCATATCAGCTGAGACCCATTAACTtatagatagagagggatggagtgtggaGAGAGTATCCTGTGTGGGTCTGGGGAGCTGGATCTGGACCCTGACATTGTGAGTGAAGAGGCTGGGAAACTGTACTCAGaactacagACAGTGATAGAGACCCATGGCGTAGGGGTTGTGGAGTCCCTGGTGCCCATCCTAGTATGGGTCCTGGAGGGTCTGGCCAGCTGCAGAGCCCAGCtccgagagagggaggaggaggccgaaagagagaaaggagagcgagatGAGCTATTGGAGAGATACCAGAGTGAGAAACTactgaggagagagagccaggagCGGTATCTGGAGTTGGATGACCAGATTGAGCAGGAGCGGAGGACaatgaggggaagagagaaggagagagagaggagggaaaaagaACTGGAGAAGAAGGCCAGAGAGCAGGCTGACCAATTGGTGGCCTTGGAGGAGCAGAGGGCTGGACTGGGCAGAGAGTTGAACACACTGAAGCACACTCACAACAAGttGGTGCTCAGTTATAAGGATCTGCTGGAAAGGAAAAgggatctagagagagagggatctcCACTAAGTAACCATGTGCGCTCCAAGAATTCACAATCTACCCAGGGCCAGTCAGAATCCTGTGTTAGCGGACAGGAGCTAACTGATCAAAGGCCAGAAACACCTCCTTGTTCTGTCCTGTTGGAAGAACCGGTAACCAAGGACGATAGGGTGATTGACATTGTCGTAAAGCCAGACAGAGATGCGTCCTTCATCAATGACATCATAAGCTCCACCCCTGAGCTGGCGAAGTTTCATGGCCTTATGAATGCCAGCACCCCGGTCCGAGCAGACGCCAAAGAGCCAATCAGAGACAAGACCAGCACGGGGGAAGAAAttaaggaggtggaggagaaggaaggagagaagaaggaggaggaggagaaaaaagAGGAAGGAGCAAAGCaggagaaggaggatgaggaggaggatatgGATAGTCTGGAATGGGAGCTGAGGAACACGGAGTCTGTGTTCTCAGAGCTGTCTGAGCTGAGTCAGGAATACATAGAGAGTGTGGACCAGGGGGCCAGTGTCAGAGGCAGCACCGACCAGTTTGAGGAGATTCTTTCTCAGTATGAGGAACTGAAACACACCCATGAGTTAGTGAATGCTGCCCGGAAAGCACTGATCTCTCGTGTGGAGGAGCTGACCAATGAGAGGTCAGCTCTTAAGGTGGAGGTGACTTCCTGCCAGGAGACTGTCACCCGATTGGAGGGAAGAatgaaggagatggaggaggaaaccAAGAGACTTCGGAAAGAACTGGAAGCAAATCAATCAGATGATGATTCCTCTCTGCCCATATCGCTGCGTCGGTTCTCTCGTTCGGAGATGTCCCGTGTTGTCATGGAGAAGAACCAGTATAAGGAGCGTTTGTTTGAGCTGCAGGAGGCTGTGAGACGCAGTCAGACCATTCGGGCAACCCAAGaagagagaatcactgagagagagaggactagtgtGTGGAGAAGATTCAACCGTTTGTTTGGCCTGAACAAGAACCCCTTGGTTCCGTCTGCTGCTCTAGCGCTGACCCTGCCGACGTCCCCGTCCCTCACTCATTCACCAATGGGGTCTCCACGGCAATTGGCTGTCAGTACGACTCAGACAGTTGGTGCCTCCCCTGCTACAGCCCTGTCTCCGCGGGTCAGGAGGAGGGAGCTGTACAGAGACATCCGCTCCCATGTCTGGGGAACCCTGGGAAAACGCCAGGTTCATGGCTGGAGCATGCCGCTGTCTCACACACAGGATTCCTCAGAGCCGACCCCTGAGCCCAAAGATGTGCCTGTCCTAGTGCAGCTCAGACTGATGGACCAGAGAGATTCTACAGCTAAGCTAAACTGTGCTGTTGCTGTTACACCTGAGATCTCAGGCGAGACAACGTGTGCAGTGTGGGTGGTCTCTGGTCCCGCCTCCAGTAGTGATGTCACAGTGATCAACCCTGCACGGTCCAATACGGTGCTGGATCAGTTCAGCCTCCCGCCCACCTCGCCCGCCCTATGCATCTGTGCTGTGCCCCCTACTGGTGAGACCTCAGGAACTGTGTGGATTGGAACTCAGGAAGGAAGTGTATTGGTACACTCCGCGTCCACAGCTAGAAGGCGCTGTCTgcagtctatctctctgtctgagggTGTGCACTCTCTCACGTATTCACAGGGTCATGTCATTGCTGGATTAGCCAATGGGACGCTTGCATTCTTCTCGCACAACCCAGGTGGATGGGATCTCCAATCACATGAGGTTTTGCCTCTGGGATCAACTCCACTGCAGCCCATTCGCTGTTGCCTAGCGAAGGGTGCGTACTTATGGGTAGGATATTGGAATCGGGTTCATGTGGTCGATGTCGAGAATAGAAAAGTGGAGCAAACTTTAACCGTCTCGGAGCGCAGTGAGCAGCAGGTGCGTTTCCTGTGTGCGGCAGGAAGTGGTGTGTGGACGTCCTGCCGGCTCGACCCTACACTTAGGCTTTTCGATTGGTCCACTGGCCGGCTCCTGCAGGATGTGGATCTGACCCCTCTGGTCACCAAAACACTGGgCCCTGCCTTCTTGTCTCTCTCCCCGCTGCAGATCTCCTCCCTCACCGTCATCTCTGGCCGGCTGTGGGTGGGAACAGGAAGTGGCGCCATCTTCTCCATCCCTGTGTCTCTCAGTTCAGAGTCTGCCTCTATACCATACTGCTCTTTGGCGGCAGCACAACTGTGTTACCATGGACACCGCCAGGCTGTCAAGTTCATCATTGCTGCACCTGGCTGTGTGACCAGCTCCTCTACAATAGGAGGCGGTGCTGTGACTCTAGTCTCTACCTCTCAACTCATTCTCAGTGGAGGAGAGGGCTACATCAACTTCCGCATCGGCGACGACGCGAATGACGGTGCGCCCGAAGCTGCCCCGCTGCGATCAGACCGCAGTCACATGATCATCTGGCAGAGCCCCACCCCCTCCCTGCCCAGCGCCGCCCTTTGACCACACCCACATCTAGTCTAGAATGAGACATGGAAGGATTAGACAGAGATGTCATACAAGAGACCAGGAAGTACAAATGGGAGCCATGTTTTAATGGGCTTCATTCACTAGGAGTTCCATTTGGATTTTTGTTCTAGAATTTTGGGATTAAATTAAGACATCGCAGCTTAATCCTTCTTGTCTCATTCTGTTATTCAGTTGCTACCCTCACCCCCTTGACTAAACCTTTCACCTGGTTAACCCAGTCTCCTCTGTGTGCCTTAATGTGATTTGACAATCGTTGCTGTGAGATTGGTTATTGTacaatgttttgtgtttttttgtgaaacaTGTTTCCTCATCATGGTAATCATAtatgggcagcaggtagcctagcggttaagagcgttgggccagtacccGAAAGATCGCTGGTTTGAAAACCTAAGCTGACTAGGTCAAAAATCGGTCTGTGCACAAGAGCAAGGCGCTTAACCCTAATTactcctgtaaatcactctggataagagtgtgtgctaaatgactcaaatgtaaatatcATCATCACTGTAGCAAAGTATTTTACAGTAAGAGTCATCATCTCTGACTTTTGGTTGGTCAGTTAAGAATGGTTTGGGTTTGTTTTAACCACAAAACATGCACACTCAGTAGCATATCATTCCATGACGTTGGCACAAGGCATTATACCCTTGTTCAAACTCGTTTACATTGATACTGAGATGTAGTGTTGAAGCTGCTGGGTTCATAATAACTATTCTTGCATAAGACCCTGGCCTTCAGTTCCCATTGCATGCTGGGTAAATCTGCAGCGTAATTGCACTTtattatcgtgtgtgtgtgtgtgtgtgtcttaaatCTTTTGAAATGATTGGCTAATCCTCTTAAAGATCCCAGAGAAATGATCTTATGTCTGCTCGTTATGACTTTGTGAAACACACATGGTTTgttaaaacaaaaaaatgtaagttTTCATTTGCAGAGCGATAAGGGAGTGGAAGTCTCAAAAGATACTTAAAGTATTTTATGCCGGTTttgaaagtgtgtttgtgtgtgtgaatcatGTCTGAAAATGTTCATCATAACTGGACTCTATGCAAGATAATCTGTATCTACTTAAATCTATGAAAAATAAACTTTGGGAAATACT

Function

NR:

description
C-Jun-amino-terminal kinase-interacting protein 4-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021589917.2 True 4602 mRNA 0.49 28 10878709 10895912

Neighbor

gene id symbol gene type direction distance location
LOC110508957 LOC106576897 coding downstream 2580 10865535 ~ 10876129 (-)
LOC110508966 u2af2 coding downstream 13447 10853702 ~ 10865262 (-)
LOC110508947 LOC106576934 coding downstream 31467 10831566 ~ 10847242 (-)
pitpnc1b LOC106593696 coding downstream 465637 10396551 ~ 10413072 (-)
LOC110508823 josd2 coding downstream 649300 10226896 ~ 10229409 (-)
si:ch211-149k23.9 LOC106591404 coding upstream 32083 10927995 ~ 10936251 (-)
LOC110537203 LOC106576885 coding upstream 41530 10937442 ~ 10941795 (-)
epn1 LOC106605818 coding upstream 54221 10950133 ~ 10968515 (-)
LOC110509040 necp1 coding upstream 147055 11042967 ~ 11051742 (-)
LOC110520834 LOC106575151 coding upstream 155955 11051867 ~ 11054170 (-)
G223703 NA non-coding downstream 29356 10848946 ~ 10849353 (-)
G223702 NA non-coding downstream 30005 10848408 ~ 10848704 (-)
G223688 NA non-coding downstream 49399 10827408 ~ 10829310 (-)
G223652 NA non-coding downstream 98733 10777319 ~ 10779976 (-)
G223627 NA non-coding downstream 180147 10697259 ~ 10698562 (-)
G223707 NA non-coding upstream 6649 10902561 ~ 10902795 (-)
G223710 NA non-coding upstream 14324 10910236 ~ 10910496 (-)
G223711 NA non-coding upstream 15359 10911271 ~ 10911708 (-)
G223717 NA non-coding upstream 22777 10918689 ~ 10920990 (-)
G223723 NA non-coding upstream 48607 10944519 ~ 10944813 (-)
LOC110508724 prpf31 other downstream 855506 10019313 ~ 10024005 (-)
G223070 NA other downstream 863817 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 875815 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1195338 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 1205270 9665862 ~ 9673439 (-)
znf628 LOC106605829 other upstream 175034 11068525 ~ 11079570 (-)
G223942 LOC106576860 other upstream 276208 11172120 ~ 11174367 (-)
G223969 LOC106605840 other upstream 380005 11275917 ~ 11278628 (-)
LOC110509576 LOC106576947 other upstream 831450 11727284 ~ 11741584 (-)
G224869 NA other upstream 856939 11752851 ~ 11753680 (-)

Expression


Co-expression Network