LOC110509020 (LOC106605819)


Basic Information

Item Value
gene id LOC110509020
gene name LOC106605819
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 10913081 ~ 10925718 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968638.1
CACTCTCTCTACTGCTGACACAGCTGGGTCATGACTCTttgctctgcctccctctctgttctttctccctgATATTGAAGGCTTTCGTTGATGCATGGTTCCTAGTGGTACACTGGGTAACACTTCAGTCATTGTAGAGATCTGATTGTCCTTGTTGGCACTACTTCAGAGAGCTTTCGACCATAACTCAGAGATCCCAGTACAGGCTAATACGATGGGGAACGCCAAGAGCAGTGCTATTTCCAAGGAGATCCTGGAGGACCTGAAGCTCAACACCAAGTTCACGGAGAACGAGTTGTGCCAGTGGTACGAGAACTTCCAGAAGCAGTGTCCCACCGGACGCATCTCGCCAGAGGAGTTCGAGACGATCTACGCGCGCTTCTTCCCCGATAGCGAAGCCAAGACCTACGCTCAGCATGTGTTCCGTTCATTCGACACCAACGAGGACGGCACTCTGGACTTCAAGGAATACATCATTGCACTGCACATGACCTCCAGTGGGAAGACGACGAGGAAGCTGGAGTGGGCCTTCTCACTGTTCGACGTGGACAAGAACGGATACATCACCAAGACAGAAGTGGAAGTCATCTGCCAGgcCATCTTTAACCTAATCCCCAAGGAAGATCTGCCCAAGTTACCAGCCGACGAGAATACACCAGAGAAGAGAGCCAACAAACTGTGGGGATACTTTGAGAAACCAGACAACGacCGGTTGGCAGAGGGAGAGTTCATCAAGGGGGTGACGGAGAACGAAAACGCCATGCGTCTCATCCACTACGAACCCATCACTGACTAGTCATCCCttcttcttcccctctttctccttcacacactatttcttcctctcctcctctttgtcATTGTATTCTAGtgttctgtctttctcttctgTGTAAATACTCTTGTATGGTGGTGTCTTAATTGTCTTCACTGTACCTTCTAAGAAAGTAGGGGTTTATGTTGGTTATGGTATACATGTCTGTCTGTGCATGTATGCCTAATGGATTGAGGCTGTTTTATGAAGGTAGATGTGATAAATATGAAGGTAGATGGCCACTATTGTAATTAGTGTTTGATGCAATATAAACACGACAGAAACATTGAGGCATAAGTATATTTATTTGTTTGTATATTGATACAATATCCCTGCTAAATGCTGTTTTCCTATCAGATTGAAGTTACAATAGCTTTTTGGTACTGTGAGATGATTGTGAAAAAGTAATGGTGGTCTAGTGTTTAGCAGTGTCCTGAATACTCATGGACTTGATCATTTGGTAACCATTGCTCATTCTATGCATTTCATTATTCTAAGAAGCTCTAAATGGTGTTGCTGTAGAAGGAAAACTTGAAATGTGCAAATGTGATAAATGGTAACAGTTTGGACACAGGTATTTGGGAAAAGAAATTGAAAATCTGTAGAACAAAAAACCTTTTCTCCATTAGGAATTTGCATGGTTGTGATGGCGGCTTTTAGATTTTTATCCTGCAATTGTCTTTTTGTTTTAATCAAAGAGTTATACGCTGCATATGGTGGATTAAAGCTTTTCT

Function

NR:

description
recoverin-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968638.1 True 1548 mRNA 0.44 3 10913081 10925718

Neighbor

gene id symbol gene type direction distance location
LOC110508993 LOC106576906 coding upstream 34446 10876757 ~ 10878635 (+)
cacng8b LOC106576929 coding upstream 85960 10769638 ~ 10827279 (+)
LOC110520833 LOC106575226 coding upstream 160264 10716613 ~ 10767669 (+)
prkcg LOC105019084 coding upstream 211353 10661090 ~ 10701728 (+)
LOC110520829 LOC102782376 coding upstream 308025 10431758 ~ 10605056 (+)
isoc2 isoc2 coding downstream 16063 10941781 ~ 10944125 (+)
foxj2 LOC106605824 coding downstream 19907 10945625 ~ 10947532 (+)
LOC110537149 LOC106591073 coding downstream 57102 10982780 ~ 10995885 (+)
mfap5 LOC106575133 coding downstream 110520 11036238 ~ 11041281 (+)
LOC110509074 LOC106576860 coding downstream 241201 11166919 ~ 11174363 (+)
G223449 NA non-coding upstream 3399 10909452 ~ 10909682 (+)
G223444 NA non-coding upstream 9555 10903179 ~ 10903526 (+)
G223441 NA non-coding upstream 12173 10900596 ~ 10900908 (+)
G223424 NA non-coding upstream 40897 10868327 ~ 10872184 (+)
G223421 NA non-coding upstream 55204 10857553 ~ 10857877 (+)
G223433 NA non-coding downstream 23225 10948943 ~ 10950025 (+)
G223752 NA non-coding downstream 63357 10989075 ~ 10989274 (+)
G223757 NA non-coding downstream 76412 11002130 ~ 11002335 (+)
G223775 LOC106605829 non-coding downstream 146900 11072618 ~ 11077866 (+)
G223418 u2af2 other upstream 56881 10853702 ~ 10856200 (+)
LOC110508886 LOC106605776 other upstream 600829 10306848 ~ 10314535 (+)
G223434 LOC106595748 other downstream 24431 10950149 ~ 10952739 (+)
G223748 NA other downstream 116130 11041848 ~ 11043692 (+)

Expression


Co-expression Network