znf628 (LOC106605829)


Basic Information

Item Value
gene id znf628
gene name LOC106605829
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11068525 ~ 11079570 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590011.2
GCGATCGTCGTTGTTGGGAGGCGGCAGCGGGTGGGtgacaactagctagctagttagtttgtGCTCAGGTTTATTGTTAAGGTTGTATGGAGTAGCACTGCGAGTCTCAATCCATTTTCACAATATCAACAAAAGCATTAGCCATGAGTTAATGATACTAGtcCTACTCTTAAGAAAGGAGACCACACACTACATCAGCTCAGCTGTTGTTTCCACACCGAGGAACAGAGTCACATCAGCTGAAGGAACCTTTCCACCTGCAATGAATGAAACCAGGAAAGAAGAGATGCAGCTCCACCAACAATAATACACACACTTACATTAATACCAAACATACAACCTTTTATTCCCTAATCGTGTCTTGCCTCAACATGGCAAACTCAGTGGCCACTCTAGTGGTCCAAGCGGAACTATTACCCCCTCAatcgtcctcctccctctctcccttcccatcGCTGCAGGGAtcaggagaaggggaggaggacagggaaagGGGGGAAGAAGTGGATGTGGAGAAAGGGATGGTGGAGGGGAATGAGGATATAGTGCTAACCAGGGTAGGGGTGCAGATGGTGACGTCATCGGTCCTGGCTGCGCCCCATCTCCAGGAGCACCCTGAGCACCCGTTCCAGTGCCTGGACTGTGGCAAGAGCTTCAAGTGGTCTTCAAGGCTGGCCCACCACCAGCGCAGCCACAACAACGAGAGACCCTACCGCTGTAACCTCTGCCCCAAGGCCTTCAAGGGCTCCTCCGCACTCCTGTACCACCAGAGGTCTCATTCAGGGGAGAAGCCCTATAAGTGTGACGACTGTGACAAAGCCTTCAAACGTTCCTCTCTGCTCCAGGTCCATCGTAGCGTCCACACAGGCCTGCGGACCTTCCAGTGCCCCTACTGCCCGCTCACCTTCAAGTGGAGCTCCCACTACCAGTACCACCTGCGCCAGCACACGGGCGAGTGCCCCTACCCCTGCGACAGCTGCCCCAAGGCCTTCAAGAACTCCAGCAGCCTGCGCCGACACAAGAACGTTCACCTGGGTCTGAAACCCTACGTGTGCACCGTGTGTACCAAGGCCTTCACCCAGTCCACCAACCTCAGACAACACatgagaatccacacaggagagaggcccTACATCTGTGGAGAGTGTGGACGCAGTTTCACACACTCGTCCAATCTGGCCCTGCACCGGAATTCTCAAAGTCACACTGGTGAAGGAaaggggggggagacagggggagacaagaTAGGGGATGAGATACAGGAAGTGATAGTGGGGGAGGACATGACATCACAAATGTTGACGGACATGGGCTTTGTGAGCCAGGAGGCCACGGTGGGGTTGGGGGTTGGGGAGGTGTTCCTATCGTCAGGTCACCTCCTGCCCCATCTCACCCTCACCCCCACCCAGGGGGGCGTGTGCACATCCAGGGCCATCGGGACAGAAGTGCACATGAGCACGGAGTCGGGCGCCAGCGTGCTGCTGTACAGCTGTGGCAGCTGTAGTCAGACATTCAGCACACGGACAGAGCTAGAGGACCACCAGGCCATGCACCTGGGCCCCGGGGAGGAGGGGGGCAgcggggtgggggaggggggagagggaggggtggggcaTCTGCTGGCTGACTttgaggaggtggtggagacGACGGCAGCAGCAGAGAATGGACACACTACTGCTGAACTACTGGGACTGACTGGGGGAGTGGACGGAGGGAATATGGGGACTACCCAGGCCCAGTTTGACCTGCTGCAGAGCTTCACAGTGGGGACTCAGATCCCCACAGACAGCGTGGAGACAGCGGGTAACACCACCGGTACAGGGACGGGCACAGAGTGTGCCtactgtgggaagagcttcaagaCCAGCGGAGGGCTCAACAGACACCTGGCACAGgtccactccctctctccctcccagtctcgcTCCCAGTTCAGCTGCTCTGCATGCGACCGCTccttcaccctcctctcttccctgctcACCCACCAGCACTCCCACACCCCTGAGCAGCGCCTCCTGGCCGAGGCTGAGGCGGAGATCGTCTGCCCCGCGTCCCTGTCCCTTTCCCTGCCCCTGCCCTCCTCCCCCAGCCAGGGGGACCAGCACCAGGACACCCAGGGGGACATCCACGTCCGCCTGATGGCTGTGACCgaggagggggacagggaggTGGTGAAGGCATCCAGCAGAGCAGTGGTCAAGggccagaggagaggagcagcTAGTAAGACCGCTGGGGGGAACAATGAGAGGCCGTACCGTTGCTCTGAGTGTGGGAAGGCCTTCAAGGGCTCATCAGGTCtgaggtaccacatgagggaccacacaggagagagaccctACCGCTGCACAGAGTGTGGCAAGAGCTTCAAGAGGTCCTCGCTGCTCTCCATACACCAGAGGgtgCATACAGGTGTGCGAGCGTTCCAGTGCCCCTACTGCCAGCTCACCTTCAAGTGGAGCTCCCACTACCAGTACCACCTGCGCCAGCACACGGGCGAGCGGCCCTACGTGTGTCAGGAGTGTGGAAAGTCCTTCAAAAACAGCAGCTGTCTGAGGAGACACAGTCAGCTCCACTCTGGCCTGCGCCCTCACATCTGTCCCATCTGCTCCAAGTCCTTCTCACAGACCTCCAACCTCAAACAGcacGAACGCACCCACTCAGGCGAGCGGCCCTTCCAGTGTGCCCAATGTCACAAGAGcttcacccactcctccaatctCCAGCTCCACCTGAGAACCCACTCCTCCAGGAAGGACTACAAGTGTCCCTTCTGTGGGAAGGAGTTTGTCATGCAGTCCTACTTGCAGAGGCACATGAGGACCCATGGGAATGGGGCTGAGGCCGGGGACGCTGGGgtgggggggaaggagggaggcagggcaggtaaagggggtggaggggtgacaaccaccaccaccttacTAAACCCCATCACCCTAGAGACCACAGGGAACTCTGGGTCTCTGATCGTGTCTCAGCCTGCGCTGGACATTCCCCCCAACACCTCCCAGAACTACTTCATGATCCAGACAGCAAATGGGCTTCAGCTCATCCCCCTGTCTGCCCccgccccccctcctccccctccgccTCCCCCCCAGACACAGTACATCCTCCTACAATGCCCCTCCACCAATGGGAGCCAGCCCAGCCTGATTCTTGTCCCCACCACAGCGACCAATCCCCAGCCCACCCTGGAGCCCCAGGGCCTCCCATTGGTCCAGACAGTTCTAAACCCTGCCCAAACCCAGATGCAACATTTCCAGACCATATCCCAGCAACAACAGCAGCCCAGgttcatcatcaccaccaacaacaacaatgtAAACAACCCTCCCATTGCTAAGACAACAACTCCCTCCCTGAACTCTATGCTGAACAAGCCCATTTTAGGGAAAAGTACCCGGACAGCCAGGTCCAGGAGAGGACGGAAACCCAAAGCCGCTGTAGGTCGGCATACTACCTCCTTGGTTGCTACGACAACCACCTCtgtcacaatgacaacagccccCGTCAGTCAGTCGGGGGATGTAATAGCTGTGTCTAGCTGTAATGTAACTAGTGTCACTCcagctactgttactgctgccaACACTATGACATCATCATTGCCATCGTCTTTACCCGCCAAGTCACAAAGTCCTTTCTCACCACCAACagcctctgtctctgtttctaccccctcctcctcttcctctgtcactGTTACCTCAGGACCCCTAAAGGTTGCCACAGTTAACTCAGTTACCACGGTTACCCCGTCCTCCCTGCCGTCTGACCCTGTGGCCTGGGTTGGGGAACGCCAAACCGCCCCAGAGTTGGGCAAGTCCACTGAGCAGGACATGAGAGGGGAACAGTATGTCCTCTGCTTccagaaagaaggaaggaagaaggaagaggtaaagataggaggagagggaggagggtccTACGTGTTGCAGTTTGAAGGGGAGGGGTCCGGGGAGGGGGGACAAGGAGgaatgggcagagagggggatggggagtcATACGTGCTGCGCTttcagactgagggagagagagaaagagagagagaaggacagagagagggagggaaggagaatggAGGCCTGGTGTCACTGAACCTGCTACAGGAATGGggaggagtgagggaaggagaaaggCGAGTAGGGGAGGATGGTGGCGAGGGAGAGTCCTTTGTGCTTCACTTCCAAACAGAGCCGCAGAGCGAAGAACGGACCACTTCTGACCGTGGCTATCCAGAAGGCCCCAGCAACAGCCTGGAACTTTCCTGCCCGCCTCCCCAGGCCTTAATGCCTCTGAATGGGCAGGAGGTGGTGTTTGAGCTGGGGGATGAGAACAAGATGGTGGGCCAGGGGTCTGGAGAGAGTGTGCAGATGATAGCCCTGATCCAAGGTGaagggggtggggagggagaagggggcaGTTACAGCGGGGCAGGGGGGGCAGTAGGGGAGGGAAGGGTGCCAATGGAGGGCATCTTTcagctggagggaggagaggggatcgTCATAATTGAGGTTAGCACCAGCAGTCTAAGAGAAGGGGGGATggacagaggggaaggaggagtaACTGTAGACAGGAGTGAAGCAAAAGGAGGGAGTGGAATAACTGAGAGGCCTGAAAAAGACAGGAACTCAGCGGAATGCATTGAAATAGAGACTGGAGCGAATGAAGGAGAAAACACAGCTACGAATGGCCCTACACCTAACTCTCAATTCTCTTAAACCTAAACCAAACAACCACTGTCAGGAAATGTGTGTGAAGGCGTGTGCATGTATGTGCACACATGAATGTACATATGCGTGtgcgcaatgtgtgtgtgtgtttttgatgtGGAGGCCTTTTCCAGCTACTGAACTAAAGGAGAGTATGGTTGTTCAGAAAGACACTATAGAAAGTACTGTAGGAAACAATACCAAGGTGCCAGAAACATGAGGAGTTACATTCACTGACTGTTAATGAAGAGGGACCTCAACAAATGACTTATGAGTTTCAATTAAACTGTCATGTTGACAGTGTTGATATTTGTGGATGAATAGATGGCTATGTTGGCTCGGTTTCACTATAAATATTCATACTAGGAAATAGTCATTATTAATAAAGTTGTTACTATTTTTGAATGAA
>TU255954
TTCCCTGCCCCTGCCCTCCTCCCCCAGCCAGGGGGACCAGCACCAGGACACCCAGGGGGACATCCACGTCCGCCTGATGGCTGTGACCgaggagggggacagggaggTGGTGAAGGCATCCAGCAGAGCAGTGGTCAAGggccagaggagaggagcagcTAGTAAGACCGCTGGGGGGAACAATGAGAGGCCGTACCGTTGCTCTGAGTGTGGGAAGGCCTTCAAGGGCTCATCAGGTCtgaggtaccacatgagggaccacacaggagagagaccctACCGCTGCACAGAGTGTGGCAAGAGCTTCAAGAGGTCCTCGCTGCTCTCCATACACCAGAGGgtgCATACAGGTGTGCGAGCGTTCCAGTGCCCCTACTGCCAGCTCACCTTCAAGTGGAGCTCCCACTACCAGTACCACCTGCGCCAGCACACGGGCGAGCGGCCCTACGTGTGTCAGGAGTGTGGAAAGTCCTTCAAAAACAGCAGCTGTCTGAGGAGACACAGTCAGCTCCACTCTGGCCTGCGCCCTCACATCTGTCCCATCTGCTCCAAGTCCTTCTCACAGACCTCCAACCTCAAACAGcacGAACGCACCCACTCAGGCGAGCGGCCCTTCCAGTGTGCCCAATGTCACAAGAGcttcacccact
>TU255957
acaactagctagctagttagtttgtGCTCAGGTTTATTGTTAAGGTTGTATGGAGTAGCACTGCGAGTCTCAATCCATTTTCACAATATCAACAAAAGCATTAGCCATGAGTTAATGATACTAGtcCTACTCTTAAGAAAGGAGACCACACACTACATCAGCTCAGCTGTTGTTTCCACACCGAGGAACAGAGTCACATCAGCTGAAGGAACCTTTCCACCTGCAATGAATGAAACCAGGAAAGAAGAGATGCAGCTCCACCAACAATAATACACACACTTACATTAATACCAAACATACAACCTTTTATTCCCTAATCGTGTCTTGCCTCAACATGGCAAACTCAGTG

Function

NR:

description
LOW QUALITY PROTEIN: zinc finger protein 628-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590011.2 False 5139 mRNA 0.56 9 11068525 11079570
TU255954 False 650 TUCP 0.61 4 11070946 11073750
TU255957 True 349 lncRNA 0.41 2 11078727 11079533

Neighbor

gene id symbol gene type direction distance location
LOC110520907 nat14 coding downstream 1552 11061915 ~ 11066973 (-)
LOC110520834 LOC106575151 coding downstream 14355 11051867 ~ 11054170 (-)
LOC110509040 necp1 coding downstream 16783 11042967 ~ 11051742 (-)
epn1 LOC106605818 coding downstream 100010 10950133 ~ 10968515 (-)
LOC110537203 LOC106576885 coding downstream 126730 10937442 ~ 10941795 (-)
LOC110509048 il-11 coding upstream 405 11079975 ~ 11087129 (-)
rasip1 LOC106605844 coding upstream 71826 11151396 ~ 11164970 (-)
LOC110509113 c209e coding upstream 279443 11359013 ~ 11363845 (-)
LOC110509134 LOC106576832 coding upstream 285853 11365423 ~ 11368231 (-)
LOC110510606 LOC106605835 coding upstream 291062 11370632 ~ 11386718 (-)
G223898 NA non-coding downstream 28788 11038462 ~ 11039737 (-)
G223886 LOC106591073 non-coding downstream 73092 10994675 ~ 10995433 (-)
G223881 NA non-coding downstream 85335 10982907 ~ 10983190 (-)
G223734 NA non-coding downstream 94103 10974219 ~ 10974422 (-)
G223919 NA non-coding upstream 9776 11089346 ~ 11089558 (-)
G223924 NA non-coding upstream 24520 11104090 ~ 11108240 (-)
G223950 NA non-coding upstream 98885 11178455 ~ 11179883 (-)
G223949 LOC100846954 non-coding upstream 136995 11216565 ~ 11224830 (-)
G223969 LOC106605840 non-coding upstream 196347 11275917 ~ 11278628 (-)
LOC110508724 prpf31 other downstream 1045322 10019313 ~ 10024005 (-)
G223070 NA other downstream 1053633 10012961 ~ 10014892 (-)
LOC110508696 ndufa3 other downstream 1065631 10001415 ~ 10002941 (-)
LOC110534283 LOC106573819 other downstream 1385154 9679758 ~ 9689081 (-)
LOC118944443 LOC106573533 other downstream 1395086 9665862 ~ 9673439 (-)
G223942 LOC106576860 other upstream 92550 11172120 ~ 11174367 (-)
LOC110509576 LOC106576947 other upstream 647792 11727284 ~ 11741584 (-)
G224869 NA other upstream 673281 11752851 ~ 11753680 (-)
G224873 NA other upstream 716320 11795890 ~ 11796309 (-)
znf628 LOC106605829 other downstream 4977 11068525 ~ 11079570 (-)

Expression


Co-expression Network