LOC110509074 (LOC106576860)


Basic Information

Item Value
gene id LOC110509074
gene name LOC106576860
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11166919 ~ 11174363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590033.2
AACCTGAGAAACGATTACTTTTTTTCTCATTCCCATACCATGGTGATTACACTTGCGAGTCCACTCACAACGTCCAACATCCCAGCATACACTGCGTTACGGTCTTCCGGTGAGAGAGAGGACACAAGAAACAGTCCAAGTGTTGACATAGTGAGACCGCCAGCTAGCCAGCATGTCTGACGTTATTGAGGAGAAGATAAAGAACTACAGGACGGCTCCCTTCGACGCCCGCTTCCCCAACACCAACCAGACCCGCAACTGCTTTCAGAACTATCTGGaCTTCCACAGGTGCAACAAAGCTTTGTCAGACAAAGGCCAGGATGTGGCTCCCTGTGACTGGTACCAGAGGGTCTACAAGAGTATCTGTCCCATGAGCTGGGTTGCCAAGTGGGACGACCAGATAGAGGCCGGAAGCTTTCCCGGCAAGATCTAAAATGGCTGACCTCAGGACTTTCTGTTAGCCACACCTTCAACTTTGACCCCTGTAGCGTGCCTAAGGACATGTGTTGACCACGTACCACACCATTCTAAATGTTATTAACAGTGTTACTAATGAAACAAACACTTAATAAAAATGCGCACCTGTTTTGAa
>XM_036968770.1
AAGAAACAGTCCAAGatgaacgtggtacttcaggcgtttggaaattgctcccaaggatgaaccagacttgtggaagtctacaataagTTTTCTGAGGTCATTGCTGATTTCTgttgattgtcccatgatgtcaagcaaaaatgcattgagtttgaagTGTTGACATAGTGAGACCGCCAGCTAGCCAGCATGTCTGACGTTATTGAGGAGAAGATAAAGAACTACAGGACGGCTCCCTTCGACGCCCGCTTCCCCAACACCAACCAGACCCGCAACTGCTTTCAGAACTATCTGGaCTTCCACAGGTGCAACAAAGCTTTGTCAGACAAAGGCCAGGATGTGGCTCCCTGTGACTGGTACCAGAGGGTCTACAAGAGTATCTGTCCCATGAGCTGGGTTGCCAAGTGGGACGACCAGATAGAGGCCGGAAGCTTTCCCGGCAAGATCTAAAATGGCTGACCTCAGGACTTTCTGTTAGCCACACCTTCAACTTTGACCCCTGTAGCGTGCCTAAGGACATGTGTTGACCACGTACCACACCATTCTAAATGTTATTAACAGTGTTACTAATGAAACAAACACTTAATAAAAATGCGCACCTGTTTTGAa
>TU255809
ACTGCGTTACGGTCTTCCGGTGAGAGAGAGGACACAAGAAACAGTCCAAGTGTTGACATAGTGAGACCGCCAGCTAGCCAGCATGTCTGACGTTATTGAGGAGAAGATAAAGAACTACAGGACGGCTCCCTTCGACGCCCGCTTCCCCAACACCAACCAGACCCGCAACTGCTTTCAGAACTATCTGGaCTTCCACAGGTGCAACAAAGCTTTGTCAGACAAAGGCCAGGATGTGGCTCCCTGTGACTGGTACCAGAGGGTCTACAAGAGTATCTGTCCCATGAGCTGGGTTGCCAAGTGGGACGACCAGATAGAGGCCGGAAGCTTTCCCGGCAAGATCTAAAATGGCTGACCTCAGGACTTTCTGTTAGCCACACCTTCAACTTTGACCCCTGTAGCGTGCCTAAGGACATGTGTTGACCACGTACCACACCATTCTAAATGTTATTAACAGTGTTACTAATGAAACAAACACTTAATAAAAATGCGCACCTGTTTTGAa

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 6B1-like

GO:

id name namespace
GO:0005739 mitochondrion cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590033.2 False 592 mRNA 0.48 4 11166919 11174363
XM_036968770.1 False 609 mRNA 0.47 5 11167044 11174363
TU255809 True 502 TUCP 0.49 4 11167009 11174363

Neighbor

gene id symbol gene type direction distance location
mfap5 LOC106575133 coding upstream 125638 11036238 ~ 11041281 (+)
LOC110537149 LOC106591073 coding upstream 171034 10982780 ~ 10995885 (+)
foxj2 LOC106605824 coding upstream 219387 10945625 ~ 10947532 (+)
isoc2 isoc2 coding upstream 222794 10941781 ~ 10944125 (+)
LOC110509020 LOC106605819 coding upstream 241201 10913081 ~ 10925718 (+)
LOC110509082 gtr3 coding downstream 14595 11188958 ~ 11216832 (+)
ephb6 LOC106576842 coding downstream 58546 11232909 ~ 11308010 (+)
LOC110509096 NA coding downstream 86830 11261193 ~ 11268540 (+)
LOC118945782 LOC106605840 coding downstream 100817 11275180 ~ 11278634 (+)
trpv6 LOC106605837 coding downstream 149687 11324050 ~ 11338618 (+)
G223788 NA non-coding upstream 42932 11100790 ~ 11123987 (+)
G223775 LOC106605829 non-coding upstream 89053 11072618 ~ 11077866 (+)
G223757 NA non-coding upstream 164584 11002130 ~ 11002335 (+)
G223752 NA non-coding upstream 177645 10989075 ~ 10989274 (+)
G223815 NA non-coding downstream 24062 11198425 ~ 11202897 (+)
G224027 NA non-coding downstream 172339 11346702 ~ 11353026 (+)
G224017 c209e non-coding downstream 184659 11359022 ~ 11363657 (+)
G224016 NA non-coding downstream 191062 11365425 ~ 11368219 (+)
G223748 NA other upstream 123227 11041848 ~ 11043692 (+)
G223434 LOC106595748 other upstream 214180 10950149 ~ 10952739 (+)
LOC110508993 LOC106576906 other upstream 288385 10876757 ~ 10878635 (+)
G224035 NA other downstream 216970 11391333 ~ 11391962 (+)
G224052 gstk1 other downstream 258757 11433120 ~ 11436460 (+)
LOC110520911 zyx other downstream 406419 11580308 ~ 11600483 (+)
mrpl51 LOC100194563 other downstream 614166 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 840145 12005269 ~ 12053650 (+)

Expression


Co-expression Network