LOC110509096


Basic Information

Item Value
gene id LOC110509096
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11261193 ~ 11268540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110509096
ATGAAATGGGGAGTGACCTTCCTGAAGGGACATACACCCGTGAATGGGAGAGCCAAGCGGTTAAATATTGACTCTATTCCTTTAAGAGCAGAGTATCAGCCCCAGCAGTCAGCAAACAGTCAATGGCTtcctcctgtattctcctgtgaAGAGCAGTTCCAGTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCTCCATCCCCTGTGGACACAACTACTGACCTATGCCATTGTCCATTGTGTATGGAGAAATTCAGACAAAGACCTGAGCTTCGAGTCAATACTTTCATTTCTGAAATGGCTGCTCAGCTCAAGAAGTTGGCTCCAGTTGAAGCCACACCCTTCACCCCAGGACAAGCCCAAACCACAACCCTCGCCAAATCTGGAGAAGTGCCATGTGACGTCTGTACTGATACAAAGCTTGTGTCTATAAAGTCCTGCCTGGTGTGTCTGgcctcttactgtgagactcacctGGAGCCTCATCAGAGAGTTGCTTCTTTCAAGAAACACAAGCTGATCGACTCTGTGGAGAACCTGGAAGACAGGGTGTGTAAGAAGCATGAGAGACCCCTGGAACTGTTCTGTAGGAGtgatcagatgtgtgtgtgtcagttctGCACTGAGACAGACCACAAGACGCACAAGACTGTCCCCATAGAGGAAgagtatagagagaggaagacTCAGATGAGGAAGACTAAGGGTAAAGTTCAGGAGATGATCCAGGAGAGACTGCTGAAGGTTAAGGAGATCAAACATGCAGTAGAGCTCAGCaagagagatgtaaagagagagatagcagaCAGCGTGGAGGTCTTCACTGCTATGGTGCGCTGTATTGAGAAAAGCCAGGCTGAGCTCATTGAGGTGGTTGAGGGGAAGCTGAAAGCAGCAGAGAGGCGGGCTGAAGGGCTCATTGAAGAGTTGGAGCAGGAAATCACTGAGCTAAAGAGAGGAAGcactgagctggagcagctctcaGATATTGAGGACCACCTTCCCCTCCTTCACAGCTCCCCATCCCTCTGTACTACCCTTCCACACACAAAGAACTGGTCTGAGATCTGTGTTCATAGCAGTGTGGGTGTGGGGACTCTGGGGAGAGTTTTGTCTCAGCTGGAGGAGACCCTCGGTAAAGAGATGAAAAATGTGTGTGTTGCTGATCTGAAGAAgatacagcagtatgcagtggATGTGACTCTGGACCCTGATACAGCATATGCCAAACTCATCCTGTCTAAGGACAGGAAACAAGTGAGATATGGAGACAAAAAGCAGAATCTCCCTGCCAACCCAGAGAGGTTTGATTATCATACCCGTGTTTTAGGAAAGGATGGGTTCTCCTCGGGGAGATTCTACTATGAAGTTCAGGTGAAAGGGAGGACTTCGTGGGGTTTAGGAATGGCTAGAGAGTCCATCAACAGGAAGGGAGTGAATCTATTGAGTCTTGCCAATGGATACTGGGCTTTGGGGCTGGAGAATGGGGATGAGTATGAGGTTTTCACTGGGTTTTATGTCCCCCTCACCCTGAGAGAGAAGCCCCAGAAGTTGGGGGTGTTTGTGGATTATGAGGAGGGTCAGGTCTCCTTTTACAACGTGGAGGCCAGGTCTCATATCTACTCTTTCACTGGCTGCACCTTCACTGAGAGACTCCACCCActgttctctacaggctatcATCCTTCCAACACAACTCCTCTTATCATCTCTCCCATCAAGTCTGGCTGAGTTTAGAGAACAGGGAAttcagtcacacagacacaaagCATATGCACAATATTACTGTGTTTATATTTGTACATTCATTAGAGAATATGTTTGTATATGTTTATCAGCTTATTTATTTGCATTCTGCTGGTATCTTCTCTGATATCATAACACTGTATATTACAATGAAAATATAAAAGTTTTACATTTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110509096 True 1926 mRNA 0.47 3 11261193 11268540

Neighbor

gene id symbol gene type direction distance location
LOC110509082 gtr3 coding upstream 44361 11188958 ~ 11216832 (+)
LOC110509074 LOC106576860 coding upstream 86830 11166919 ~ 11174363 (+)
mfap5 LOC106575133 coding upstream 219912 11036238 ~ 11041281 (+)
LOC110537149 LOC106591073 coding upstream 265308 10982780 ~ 10995885 (+)
foxj2 LOC106605824 coding upstream 313661 10945625 ~ 10947532 (+)
LOC118945782 LOC106605840 coding downstream 6640 11275180 ~ 11278634 (+)
trpv6 LOC106605837 coding downstream 55510 11324050 ~ 11338618 (+)
LOC110520909 LOC106576839 coding downstream 71766 11340306 ~ 11346518 (+)
m6pr mprd coding downstream 130480 11399020 ~ 11406578 (+)
LOC110509154 LOC106576792 coding downstream 142848 11411388 ~ 11420807 (+)
G223815 NA non-coding upstream 58296 11198425 ~ 11202897 (+)
G223788 NA non-coding upstream 137206 11100790 ~ 11123987 (+)
G223775 LOC106605829 non-coding upstream 183327 11072618 ~ 11077866 (+)
G223757 NA non-coding upstream 258858 11002130 ~ 11002335 (+)
G223752 NA non-coding upstream 271919 10989075 ~ 10989274 (+)
G224027 NA non-coding downstream 78162 11346702 ~ 11353026 (+)
G224017 c209e non-coding downstream 90482 11359022 ~ 11363657 (+)
G224016 NA non-coding downstream 96885 11365425 ~ 11368219 (+)
G224033 NA non-coding downstream 120366 11388906 ~ 11389145 (+)
G223748 NA other upstream 217501 11041848 ~ 11043692 (+)
G223434 LOC106595748 other upstream 308454 10950149 ~ 10952739 (+)
G224035 NA other downstream 122793 11391333 ~ 11391962 (+)
G224052 gstk1 other downstream 164580 11433120 ~ 11436460 (+)
LOC110520911 zyx other downstream 312242 11580308 ~ 11600483 (+)
mrpl51 LOC100194563 other downstream 519989 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 745968 12005269 ~ 12053650 (+)

Expression


Co-expression Network