LOC118945782 (LOC106605840)


Basic Information

Item Value
gene id LOC118945782
gene name LOC106605840
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11275180 ~ 11278634 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040884.1
tctctctctctctctctttctctctctctctctctctctctctctctctctctctctctctctctctcagtaaacAGTACTGAGCAGGGAGGGGCTTAGTAACGTGACTGCTGAAGTGAAACTAATGGAAACCAAAATGTTATGAACAGATCAATCTTTTGCACTCAGAATCTATCCACACAGTTGCGCCTCCTGTAGCCTCCAGTCACTGTTGACCCTTTTTCTAATcagaagaagagaaagaacagtCAACACACGCTGAGCCATGGTTtcctcctgtattctcctgtgaAGAGCAGTTCCATTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCTCTATCCCCTGTGGACACAACTACTagcTCTCCATCCATCTGCACCACCCTTCCACCTTCCAAgtactggtctgagatcagtgtCCACAGTGGTCTGTGTGTGGGGACTATGAGGAGTGCTGTCTCAGCTGTGAAATACtgaataaagagatggagaagttGTGTGATGTTGATCTGAAGAGGACACAGTAGTGTGCAGTGAATGTGACTCTGGACCCTCATATAGCGAATACAAAACTCATCCTGTCTGAGGACTGGAAACAAGTGAGATCTGGAAGCATAAAACAGAATCTCCCAGCCAACCCAGAGAGGTTTGATAATAATGCCTGTGTTTTCGGGAATAAGAGGTTCTCCTCAGGGAGATTCTATTATGAGGTGCAGGTGAAGGGGAAGTCTATGTGGGTTTGGCTAGAGAGTGGCTAGAGAGTTTGGCTAGAGAGTGGCTAGAGAGTCCATCAACAGGAATGATTGTGATGAATCACCAAGTCCTGTAGATGGATATTGGACTGTAGGGCAGTGGAATATGAATGAATACAAGGCATACGCTGGGCATTGGGTCAACCTCTCCCTGAGTAAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTGAGGTTTTCTTTTATGATGTGGATGCCAGGTCTCATATCTACTCTTTCACTGGCTGCACCTTTACTGAGAGACTCTACCCACTGTTCTCTACAGGCACGAATATTCCTGGTGATAACTCAGCTCCACTTATCATCTCTACCATCAAGTCTGACTGAGTTTAGTGAACAAGGAACTCAGTCAATGGGAATCACAGCAATATGCCTTATTCAATTTGGCGATATTTCTTCTTGCGATAGATATTTCTTAGTGCTAGACCTTATCAGTTGATCAGATTTCATGATGAAGAATACTTCTCTTATGTCCTAATACTGTTTTACAATCTATATTAAAAAGGTATTGCCTGTGAG
>TU255814
AGATCAATCTTTTGCACTCAGAATCTATCCACACAGTTGCGCCTCCTGTAGCCTCCAGTCACTGTTGACCCTTTTTCTAATcagaagaagagaaagaacagtCAACACACGCTGAGCCATGGTTtcctcctgtattctcctgtgaAGAGCAGTTCCATTGCTCTATCTGTCTGGATGTGTTCACTGAGCCAGTCTCTATCCCCTGTGGACACAACTACTagcTCTCCATCCATCTGCACCACCCTTCCACCTTCCAAgtactggtctgagatcagtgtCCACAGTGGTCTGTGTGTGGGGACTATGAGGAGTGCTGTCTCAGCTGTGAAATACtgaataaagagatggagaagttGTGTGATGTTGATCTGAAGAGGACACAGTAGTGTGCAGTGAATGTGACTCTGGACCCTCATATAGCGAATACAAAACTCATCCTGTCTGAGGACTGGAAACAAGTGAGATCTGGAAGCATAAAACAGAATCTCCCAGCCAACCCAGAGAGGTTTGATAATAATGCCTGTGTTTTCGGGAATAAGAGGTTCTCCTCAGGGAGATTCTATTATGAGGTGCAGGTGAAGGGGAAGTCTATGTGGGTTTGGCTAGAGAGTGGCTAGAGAGTTTGGCTAGAGAGTGGCTAGAGAGTCCATCAACAGGAATGATTGTGATGAATCACCAAGTCCTGTAGATGGATATTGGACTGTAGGGCAGTGGAATATGAATGAATACAAGGCATACGCTGGGCATTGGGTCAACCTCTCCCTGAGTAAGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGAGGAGGGTGAGGTTTTCTTTTATGATGTGGATGCCAGGTCTCATATCTACTCTTTCACTGGCTGCACCTTTACTGAGAGACTCTACCCACTGTTCTCTACAGGCACGAATATTCCTGGTGATAACTCAGCTCCACTTATCATCTCTACCATCAAGTCTGACTGAGTTTAGTGAACAAGGAACTCAGTCAATGGGAATCACAGCAATATGCCTTATTCAATTTGGCGATATTTCTTCTTGCGATAGATATTTCTTAGTGCTAGACCTTATCAGTTGATCAGATTTCATGATGAAGAATACTTCTCTTATGTCCTAATACTGTTTTACAATCTATATTAAAAAGGTATTGCCTG

Function

NR:

description
PREDICTED: E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040884.1 False 1308 mRNA 0.45 3 11275180 11278634
TU255814 True 1157 lncRNA 0.45 3 11275327 11278630

Neighbor

gene id symbol gene type direction distance location
LOC110509096 NA coding upstream 6640 11261193 ~ 11268540 (+)
LOC110509082 gtr3 coding upstream 58348 11188958 ~ 11216832 (+)
LOC110509074 LOC106576860 coding upstream 100817 11166919 ~ 11174363 (+)
mfap5 LOC106575133 coding upstream 233899 11036238 ~ 11041281 (+)
LOC110537149 LOC106591073 coding upstream 279295 10982780 ~ 10995885 (+)
trpv6 LOC106605837 coding downstream 45416 11324050 ~ 11338618 (+)
LOC110520909 LOC106576839 coding downstream 61672 11340306 ~ 11346518 (+)
m6pr mprd coding downstream 120386 11399020 ~ 11406578 (+)
LOC110509154 LOC106576792 coding downstream 132754 11411388 ~ 11420807 (+)
LOC110509281 LOC106576719 coding downstream 190140 11468774 ~ 11476776 (+)
G223815 NA non-coding upstream 72283 11198425 ~ 11202897 (+)
G223788 NA non-coding upstream 151193 11100790 ~ 11123987 (+)
G223775 LOC106605829 non-coding upstream 197314 11072618 ~ 11077866 (+)
G223757 NA non-coding upstream 272845 11002130 ~ 11002335 (+)
G223752 NA non-coding upstream 285906 10989075 ~ 10989274 (+)
G224027 NA non-coding downstream 68068 11346702 ~ 11353026 (+)
G224017 c209e non-coding downstream 80388 11359022 ~ 11363657 (+)
G224016 NA non-coding downstream 86791 11365425 ~ 11368219 (+)
G224033 NA non-coding downstream 110272 11388906 ~ 11389145 (+)
G224034 NA non-coding downstream 111023 11389657 ~ 11389896 (+)
G223748 NA other upstream 231488 11041848 ~ 11043692 (+)
G223434 LOC106595748 other upstream 322441 10950149 ~ 10952739 (+)
G224035 NA other downstream 112699 11391333 ~ 11391962 (+)
G224052 gstk1 other downstream 154486 11433120 ~ 11436460 (+)
LOC110520911 zyx other downstream 302148 11580308 ~ 11600483 (+)
mrpl51 LOC100194563 other downstream 509895 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 735874 12005269 ~ 12053650 (+)

Expression


Co-expression Network