LOC110509154 (LOC106576792)


Basic Information

Item Value
gene id LOC110509154
gene name LOC106576792
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11411388 ~ 11420807 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590127.2
AAGGAATGGTAAAGAATGAGAGGGGGCGGGATTTCTCTCATCTGGCTCACCGTTGTTTGCTTCACACAATAATCAGAAAAACATCAAAGATTCCTTCCAAAAGCAAATGCGTAAAACGTTTACGGATAGAAGCTGGATTTTATAtttaaaaggttaaaaaaaataaaggtcCAGGAGATTGAGAGAGCATGGATGCAGGTGATGACCAGAACACGGGTCCTACCAATGGGAATGCGCCGTCTGCTGGGAACTCCCGCCCTCCCCAGATAGCCCACATGTCTCTGTATGAGAGGCAAGCTGTGCAGGCCCTTCAGGCGCTGCAGAGACAGCCGAACGCAGCCCAGTACTTCCAGCAGCTCATGCTGCAGCAGCAAATCAACAGTGCCCAGCAGCTTCACAACCTGGCTGCCGTGCAACAGGCCACCCTCGCTGCTAGTCGCCAGTCCAACTCTCccaaccacagtgtctcccaagcAACCACCACTGTCAATCTGAGCACCACCTCTGGGGGAGGGACCATGACCAATCCCCGCCCCCTCGGCCCTGCCACATCAGTGACATCATCAGCTCTCAGCCAATCAGTGCTGCTGGGTGGGAACTCAGCCGGACAGGGCCAGATGTACCTGAGAGTCAACCGCTCCCTCAGGGCACCCCTCGCAGCCTCCCAGCTCATCTTCATGCCTGGTGGCTCAGCAACGGCTGCGGTAGCGACAGTTGCACAGCAACAGCCtcagcaacaacagcagcaacaggAAGTCCATCCCACCTCCAATGCCCAATCCGACAATGACCAGGTGCAAAACCTGGCTCTCCACTGTATCTCCACTCCCAGAGTGGCCGCAGTGAAGACAGAGTTTCCAGACAGGAGAGACGCAGCCAACTATTCTCTAAGTCAACAACAACAGCATCctcagcagcaacagcagcagttcTCTCAGAACACCCAGCAGCAACAGCAACATATGGCCAACAAACTGACTAGCTACACTCATCCCACTGCTCTCCCCAGTATAAATGTCAAGACTGGAAACCAGCTGAATATGGCCCCAACCGCTGCCACCTCAGTTCccgcctcctcctccccctctcccacactccctctctcccagctccTCATCTCCCCCTCAGGCCTATGTCAGGCCCGGGCGGTAACCACAGTTACCCCTGCTGCCACGGTGACGCACATCCTAGTCCCCACCTCCAACGTTCCTACCTCCTCTCAAGGCTACCCCATAGGTTCAGTCGCCCCCAAAACTAACGTCAACACCCAGACCTTGGTGGTGCAGCCACTGCAGCAGTCCAACACTAACTTGGACAAGGTGAGCCACAGCTCTGGCCCTGTGCACATACAGCCCAAAACCTCACAGGGTCACCGCTTACCTGTCCAGCTTTCCCCACGCCACCCTCCACCTATCCTCCCGGCTCCGCCCAACACGGGGGGCAACCACCCGCCCCATGTCCCAGTCCAGCTGGTGGGAGCTAGGCAGGGCTCAGTAGGAAACTCCCAGGCTTTGGCACAGGCCCGAAGCTGCTGCCCCCAGGACAACGGCATCGCTATAGCCTCTACTGGAGGGAACACCACGGCAAAGCCTGCAATTGGCTCATTGAAGAGGAAGTCGGAAACTGATGCAACCAATGAGATGGTAGTCGAACCTTCCCAACTTTGCTGTCCACCAATGAGAGATTCTGCCCCTCTATCTCCCGCCCCCACGATGGACTCAGcTCCTAAAGTGGTGCcagccttctcctctccccccaccctGTCTCTACCCCTGtcttggggggtggggggtcagggAGACAGAGCCCCTCTGCCCCAGGCGGTGGTCAAACCTCAGGTCCTCACCCACCTCATAGAGGGTTTTGTCATCCAGGAGGGAGCTGAGCCTTTCCCTGTGACTGGGCCAGTGAAGGAGCCACTAGCCATGGGTGTTCAACAGGCTGACAATGGAGGCCCTGCAGTGTTGAAGTGTGAGTACTGTGAGAGCTTGGCTCCTGCCAGCCAGTTCAGAGGCTCCAAGAGGTTCTGCTCCAAGACCTGCGCTAAGAGATACAATGTGAGCTGCAGTCATCACTTCCAGGTCAGTAGGGGGCGAGCTTCTGCACGGCCGCCTGGTCCTCCCGTTCCCCCAGACAACATCGTCAGACGCAGGGGTCCTCGCAGGAGTAGCTCGGAGATCGCCTGCGCTAAAATAGCCGGCAGACATTTACCTGTCAAGGAGTGTCGTTCTGAGTCCAGTCGCTCAGAGGATGTGTCCAGttgtgatgaggaggaggaagaagattcCCCATCACTCTCCCCtagctcctccctctcctgccctAGGCCCGCCCACTGCGATCCCCATTTGGACGACTCAGCTCAAGGCAGCCTCCCATTGGATGAGGCCAACTTCCTGTCTGGGAGCCCCGCCCATTGGGGTGTGGAGGAGGTCTGCAGGTTCATCTCTTCACTGCAAGGTTGCGAGGAGCTGGCAGCCCAGTTCCTGTCCCAGGAGATTGACGGACAGGCCCTGCTGCTACTCAGAGAAGAACACCTCATCTCCACCATGAACATCAAACTAGGACCCGCCCTCAAGATCTGTGCCTTCATCAACAGCCTACGAGACTgacgggggaaggagggagggatgaggaagaGGGGTTCCAATGAACTTCAAACTGGGACCCACACTAAAGACTTGTATTAGTGACGTTCAAGCCTGAGACCAAGACTGAAAGGGAGGGGAAAATGGGGGTTGATTTTAATCATAAACCTCAATCATTTTAGAGACTAGATGAAGAGAAGGGGGTTGAATATAGATAGGTAAGAGGGGAAATAATTAGAATATGCTTAGACTTTCCTGGACATGGAATGTGCAAAAAAATCTGATAGTCTGTCTTTAGAGTTCATGTTTGTGAGGTAAACTGACAAAGTATGGGtgagttcgtgtgtgtgtgtgtctgtcaggagAAACATATACTCATTTGACACTGCAAACGTGGTCACCTACAGTAAccgtggctagctagctaggacaGTTCAAGTTGCCTTTTTCTACATTTCAACGGTGCTATAACCATAGTGTTATTATTGAAAATGGTCCATTTCACTTTTCTTTCTACAAAGTGGATTTGTAATGTTAATGTAGATGCCAGGCTCTAAGTGTATGAAAGGACATTGAAGAGCTTTAATTCACTTTTTTTTCTACCAGATACAACCCTGTTTTAAAGCTTTGATCTTTTGTACTACAATCAAAGTTATTCTTTTGGTGTGGAAGTTTTTCATGGAGGGGGATGTAGTGAGTATTAGTAACTGACTGAACTACCTGAATATGGGTATTTGTCCTGAGAGGGGAGATACTCTGTGTATGCAGTACTACCAATAATATGGTTCCTGTTACTGGAACTATGCTCTTTAGCTCTGAGTGTTGTTTGTATATGGCTGCTACAGATTCAGGGCTATTCAACGCCGGTCCTGGAGGGCTGAAAcacttctgtttttttgtttctacttggtagttaattgcactcacctggtgtcccaggtctgaaccAGTCCCTTATTAGGAGAAGATGAAAATTAGAAATGTTTCAGCCCTCCGGGATCAGAATTACACTGAtcgaaaatataaacacaacatgtaaagtcttggtcccatgtttcatgagctgaaataaaagatcccagaaatgttc

Function

NR:

description
polyhomeotic-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590127.2 True 3678 mRNA 0.52 15 11411388 11420807

Neighbor

gene id symbol gene type direction distance location
m6pr mprd coding upstream 4810 11399020 ~ 11406578 (+)
LOC110520909 LOC106576839 coding upstream 64870 11340306 ~ 11346518 (+)
trpv6 LOC106605837 coding upstream 72770 11324050 ~ 11338618 (+)
ephb6 LOC106576842 coding upstream 103378 11232909 ~ 11308010 (+)
LOC110509281 LOC106576719 coding downstream 47967 11468774 ~ 11476776 (+)
LOC118944450 LOC106605830 coding downstream 58990 11479797 ~ 11489832 (+)
LOC118944486 LOC106592935 coding downstream 75499 11496306 ~ 11501325 (+)
LOC110520911 zyx coding downstream 159501 11580308 ~ 11600483 (+)
kel LOC106575861 coding downstream 181576 11602383 ~ 11608965 (+)
G224037 NA non-coding upstream 13084 11397874 ~ 11398304 (+)
G224034 NA non-coding upstream 21492 11389657 ~ 11389896 (+)
G224033 NA non-coding upstream 22243 11388906 ~ 11389145 (+)
G224016 NA non-coding upstream 43169 11365425 ~ 11368219 (+)
G224017 c209e non-coding upstream 47731 11359022 ~ 11363657 (+)
G224051 NA non-coding downstream 11420 11432227 ~ 11432808 (+)
G224055 NA non-coding downstream 26774 11447581 ~ 11447936 (+)
G224054 NA non-coding downstream 27307 11448114 ~ 11448478 (+)
G224056 NA non-coding downstream 29086 11449893 ~ 11450122 (+)
G224057 NA non-coding downstream 29463 11450270 ~ 11450539 (+)
G224035 NA other upstream 19426 11391333 ~ 11391962 (+)
LOC110509074 LOC106576860 other upstream 237025 11166919 ~ 11174363 (+)
G223748 NA other upstream 367696 11041848 ~ 11043692 (+)
mfap5 LOC106575133 other upstream 370128 11036238 ~ 11041281 (+)
LOC110537149 LOC106591073 other upstream 415973 10982780 ~ 10995885 (+)
G224052 gstk1 other downstream 12313 11433120 ~ 11436460 (+)
mrpl51 LOC100194563 other downstream 367722 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 593701 12005269 ~ 12053650 (+)
G224297 NA other downstream 600158 12020965 ~ 12022444 (+)

Expression


Co-expression Network