LOC110509171 (LOC100196661)


Basic Information

Item Value
gene id LOC110509171
gene name LOC100196661
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11433118 ~ 11436628 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590196.2
GGAACGTTTTTACTTGCAATGCAATGACAATGTTACAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA
>XM_021590151.2
CTCCTCAAAATAACGTTATAACTAAGTGTTTGTGGCTACAGGAACGTTTTTACTTGCAATGCAATGACAATGTTACAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGGTCATGTGCCGTTACAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA
>XM_036968881.1
CCAGTTGAGTGTCTTTATCGacagccagctgGTGGTCAAAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGGTCATGTGCCGTTACAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA
>XM_021590173.2
TGCAAGTTATTATATCCGGGTTATTTAAAGCAGCTCCAGTTGAGTGTCTTTATCGGTAGGTTACATGTACCCTTGAAATAATAAACGAAAGAACAAAGATAACAACTGGTTTGACTTTTGCACGGacagccagctgGTGGTCAAAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGGTCATGTGCCGTTACAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA
>XM_021590195.2
CCCTAGACTGCAAGTTATTATATCCGGGTTATTTAAAGCAGCTCCAGTTGAGTGTCTTTATCGGTAGGTTACATGTACCCTTGAAATAATAAACGAAAGAACAAAGATAACAACTGGTTTGACTTTTGCACGGacagccagctgGTGGTCAAAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA
>XM_021590159.2
TGGCCATGACCCAGAAGCACTGGGCCCTAGACTGCAAGTTATTATATCCGGGTTATTTAAAGCAGCTCCAGTTGAGTGTCTTTATCGGTAGGTTACATGTACCCTTGAAATAATAAACGAAAGAACAAAGATAACAACTGGTTTGACTTTTGCACGGacagacagccagctgGTGGTCAAAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGGTCATGTGCCGTTACAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA
>XM_021590166.2
GAAAAGGATTAAGATTAGCTATGGAAAAAACTACTTTAGATGTAATTTAACACAATGTATCCCTTTCTGGCCATGACCCAGAAGCACTGGGCCCTAGACTGCAAGTTATTATATCCGGGTTATTTAAAGCAGCTCCAGTTGAGTGTCTTTATCGacagacagccagctgGTGGTCAAAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGGTCATGTGCCGTTACAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA
>XM_021590181.2
AGGTTAAAGTTAGGAAAAGGATTAAGATTAGCTATGGAAAAAACTACTTTAGATGTAATTTAACACAATGTATCCCTTTCTGGCCATGACCCAGAAGCACTGGGCCCTAGACTGCAAGTTATTATATCCGGGTTATTTAAAGCAGCTCCAGTTGAGTGTCTTTATCGGTAGGTTACATGTACCCTTGAAATAATAAACGAAAGAACAAAGATAACAACTGGTTTGACTTTTGCACGGacagacagccagctgGTGGTCAAAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA
>XM_021590187.2
TAGGTTAAAGTTAGGAAAAGGATTAAGATTAGCTATGGAAAAAACTACTTTAGATGTAATTTAACACAATGTATCCCTTTCTGGCCATGACCCAGAAGCACTGGGCCCTAGACTGCAAGTTATTATATCCGGGTTATTTAAAGCAGCTCCAGTTGAGTGTCTTTATCGacagacagccagctgGTGGTCAAAGATGGCAAGTTCCAGGAAAGTGATTGAACTGTTTTATGACGTGGTCTCTCCCTACTCATGGCTTGGCTTTGAGAAATGTGTGGAACATTGACCTTAAACTACGTCCTGCGTTCTTGGGTGGCATCATGCAAGGATCAGGTAATAAGCCCCCAGGTCTGGTCCCAAACAAGTTCCTGTATATGACCACAGACCTGCACCGTCTAGCCCAGTACTTCCAGGTCCCCATCAGTCCCCCTGCTGACCCCTTTGAGGCCATGTTCGAAAAAGGCTCGCTGTCTGCCATGCGCTTTGTGGCGGCGGTacaggagagggaggtgggaggagaTAAGCAGGTAGAGCAGGTGTCACGGGAGCTGTGGATGAGGATCTGGAGCCAAGACAAAGACATTACCCAGCCTGCATCACTCTCTGAGGCAGCCATGAAGGCAGGGCTCTCAGCCAGTGAGGTGGAAGAGCTGCTGAAACTGTCCACCTCTAAGGAAATCAAAGACAAGCTGAAGAGATCCACCCAGGAAGCACTGGACCATAGGGCCTTTGGTTTTCCTCTGGCTGTGTGTCATGTGAATGGAAAGGCGGAGGTGTTCTTTGGCTCTGACCGGTTTGAGCTTATTGCCGACTGCATAGGAGAGAAGTGGATGGGACCCCAGCCTACTGCTGCCAAACTGTGACTTGAAACATGAAACTGGGACGTGACTGGGACTTGAAACCTGTCACATATGGAATTCATTAAGATGAATAAATATAATCGATATGA

Function

NR:

description
glutathione S-transferase kappa 1-like isoform X3

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016740 transferase activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590196.2 False 791 mRNA 0.50 8 11433118 11436182
XM_021590151.2 False 848 mRNA 0.50 8 11433118 11436222
XM_036968881.1 False 811 mRNA 0.51 9 11433118 11436480
XM_021590173.2 False 916 mRNA 0.49 9 11433118 11436515
XM_021590195.2 False 907 mRNA 0.49 9 11433118 11436523
XM_021590159.2 False 952 mRNA 0.50 9 11433118 11436547
XM_021590166.2 False 949 mRNA 0.49 9 11433118 11436614
XM_021590181.2 False 1015 mRNA 0.48 9 11433118 11436627
XM_021590187.2 True 946 mRNA 0.49 9 11433118 11436628

Neighbor

gene id symbol gene type direction distance location
styk1b LOC106576787 coding downstream 129 11424793 ~ 11432989 (-)
LOC110510606 LOC106605835 coding downstream 46400 11370632 ~ 11386718 (-)
LOC110509134 LOC106576832 coding downstream 64887 11365423 ~ 11368231 (-)
LOC110509113 c209e coding downstream 69273 11359013 ~ 11363845 (-)
rasip1 LOC106605844 coding downstream 268148 11151396 ~ 11164970 (-)
LOC110509245 LOC106576972 coding upstream 12630 11449258 ~ 11454366 (-)
fam131bb fam131b coding upstream 67239 11503867 ~ 11548741 (-)
LOC110509335 NA coding upstream 176585 11613213 ~ 11614838 (-)
LOC110509576 LOC106576947 coding upstream 290656 11727284 ~ 11741584 (-)
LOC110509520 lag-3 coding upstream 339427 11776055 ~ 11779268 (-)
G224706 NA non-coding downstream 9171 11421745 ~ 11423947 (-)
G224702 LOC106576792 non-coding downstream 19049 11413707 ~ 11414069 (-)
G224699 NA non-coding downstream 25209 11407600 ~ 11407909 (-)
G224693 NA non-coding downstream 40014 11392614 ~ 11393104 (-)
G224692 NA non-coding downstream 40692 11391023 ~ 11392426 (-)
G224712 NA non-coding upstream 719 11437347 ~ 11439264 (-)
G224715 NA non-coding upstream 4144 11440772 ~ 11443128 (-)
G224717 NA non-coding upstream 8385 11445013 ~ 11445590 (-)
G224720 NA non-coding upstream 10993 11447621 ~ 11447947 (-)
G224718 NA non-coding upstream 12232 11448860 ~ 11449099 (-)
G223969 LOC106605840 other downstream 154490 11275917 ~ 11278628 (-)
G223942 LOC106576860 other downstream 258751 11172120 ~ 11174367 (-)
znf628 LOC106605829 other downstream 359368 11068525 ~ 11079570 (-)
LOC110508724 prpf31 other downstream 1409915 10019313 ~ 10024005 (-)
G223070 NA other downstream 1418226 10012961 ~ 10014892 (-)
G224869 NA other upstream 316223 11752851 ~ 11753680 (-)
G224873 NA other upstream 359262 11795890 ~ 11796309 (-)
LOC110509592 LOC100136300 other upstream 372155 11808113 ~ 11811663 (-)
G224954 LOC106576536 other upstream 578298 12014926 ~ 12016101 (-)

Expression

LOC110509171(LOC100196661) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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LOC110509171(LOC100196661) Expression in each Bioproject

Bar chart with 21 bars.
LOC110509171(LOC100196661) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
End of interactive chart.

Co-expression Network