LOC118944486 (LOC106592935)


Basic Information

Item Value
gene id LOC118944486
gene name LOC106592935
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11496306 ~ 11501325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039824.1
CTGTCCTGTCTTTCAGAGAAGCGTTCCCTCCAGTCTGTGAGGGGAATATTTCAgcgcctcttctcctcttcctcaacCAGCCAGGCTGAAGCTCAGgAATCCACCCCACCTCCACTCACTGACACCATGTCCTCAGAGGAGATCAAAGCCTGGGAAGAAGAAGAGTTGGATAAGCCAATCAGTATGGAGGAGATATGGATTGATCCTTCCACCTTTCAACTGGTGGAGAGAACCCCCCTTCACAAGacccACACTTTGTTCTCCTTGCTGGGTCTCAGTCATGCCTAGGTTACCAGCATTGGGAAACTGGTGGGAGTCGTAGTTGCAGAAGGCCATCGAGGGCTCCACCCTTAGTGGGGTGAGATTGCGCCCCCCTCTGGCCAGTTTCAGAAATGCCAACCGTAAAGCCAAGAAGCATGAGGCTCCTcccaccaccccctcctcccccaccaggaagagggagctgtggggtgagggggggaagaggaaggaagggggcGAGGGGTTTAGGTGGGAGGTTAAGGAAGAAAAGGGTAGAGATggagaaaagagggaggaagagatggaaaggTGGAAGGATGAGGTGGTTAGGACAGAGGGAAAGGGTGACATGGATGAGGCTCAGGAAGAACCCAGGGGGAACACAGGAGGAGCAGGTGGCTCCAGTGCAGGTGCAGAGTGTGATACCTCCACCCCCAACAGCGAAGGGACAGACTGTCTCCCTCAGGAGCCTTCCTCCCCCGTCTCCCCCAcctcaccaccctcctcctccactcgtGTCTTCATTGTGTCATCCCTTCCTACCGTGCCGGATACGGATGGAGATAGGGAGAACAAAGATTCTGAAGAGCCGATTTAGATGGCGACTGAGGGAATTCTGTGGATTCTGTTTCTTAAATCAAGACCTCTCTGGCCTCATTCAGTGAGAGGGTGTCAAGGTGCATCCTGGGTAATGGAGTTCTGTGCAGGCTCATTCGAGGCTCTGAAGATGTTCAGCTTTCAGGGAGCAGGAAGAACAGGTGTACACAGtgcttctgggacttgtagttttggAATTTCTAGTAGCTAATAATACTTTTTGTACCATGGTAGCCTCTTTCCTTATTTTTCTGTGGATCTCACTcatctttaattatttttttctaCTCAAGACAGACAGCCTATTCCTTTTCACTATTTCAGTTTCTcaggtctctctccgtgtctttCAAACTACAAAAATGGACAGATGTTCTAAGTTCTTCATCTGTACCTATCATTGTTGGTCTCCTTGTCCCGGTATTGTTGAATGTATGAATGTGTTTGTAGCTACATGGTAGTGTATGTCTGTATCACTGAACTCCATGTATCTTTATGGCACTGTATATGACAGCAATGAAATGTTTGATAATGAAATCACATCATTAATCATGACCATGTCTGTCAATGGACTGATTTATATTTCATCAAATCGATTGAACGTTTACTGATTAATGAATATACAGGCTTTAAATGATTACTGTAACCACTAAAGTAAATATTGAAATTGTTCGTACCGTTGCCTATCTACTATTCTTATGGAATACAATAAATATTGTTTTCAGTAACAT

Function

NR:

description
chloride channel protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039824.1 True 1589 mRNA 0.47 5 11496306 11501325

Neighbor

gene id symbol gene type direction distance location
LOC118944450 LOC106605830 coding upstream 6474 11479797 ~ 11489832 (+)
LOC110509281 LOC106576719 coding upstream 19530 11468774 ~ 11476776 (+)
LOC110509154 LOC106576792 coding upstream 75499 11411388 ~ 11420807 (+)
m6pr mprd coding upstream 89728 11399020 ~ 11406578 (+)
LOC110520909 LOC106576839 coding upstream 149788 11340306 ~ 11346518 (+)
LOC110520911 zyx coding downstream 78983 11580308 ~ 11600483 (+)
kel LOC106575861 coding downstream 101058 11602383 ~ 11608965 (+)
LOC110509324 LOC106575899 coding downstream 109254 11610579 ~ 11613064 (+)
LOC110509359 LOC106576663 coding downstream 122640 11623965 ~ 11630699 (+)
LOC110509378 LOC106605735 coding downstream 129518 11630843 ~ 11635397 (+)
G224081 NA non-coding upstream 2965 11492578 ~ 11493341 (+)
G224071 NA non-coding upstream 31653 11464049 ~ 11464653 (+)
G224062 NA non-coding upstream 41081 11455000 ~ 11455225 (+)
G224057 NA non-coding upstream 45767 11450270 ~ 11450539 (+)
G224056 NA non-coding upstream 46184 11449893 ~ 11450122 (+)
G224097 NA non-coding downstream 29164 11530489 ~ 11531732 (+)
G224099 NA non-coding downstream 39543 11540868 ~ 11541486 (+)
G224105 NA non-coding downstream 50959 11552284 ~ 11552590 (+)
G224126 NA non-coding downstream 60434 11561759 ~ 11561981 (+)
G224134 NA non-coding downstream 74826 11576151 ~ 11576458 (+)
G224052 gstk1 other upstream 59846 11433120 ~ 11436460 (+)
G224035 NA other upstream 104344 11391333 ~ 11391962 (+)
LOC110509074 LOC106576860 other upstream 321943 11166919 ~ 11174363 (+)
G223748 NA other upstream 452614 11041848 ~ 11043692 (+)
mfap5 LOC106575133 other upstream 455046 11036238 ~ 11041281 (+)
mrpl51 LOC100194563 other downstream 287204 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 513183 12005269 ~ 12053650 (+)
G224297 NA other downstream 519640 12020965 ~ 12022444 (+)
LOC110509826 LOC106576393 other downstream 757996 12259134 ~ 12357204 (+)

Expression


Co-expression Network