LOC110509359 (LOC106576663)


Basic Information

Item Value
gene id LOC110509359
gene name LOC106576663
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11623965 ~ 11630699 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590271.2
TGAGCATTTTGCCTTCGTATATCACATGCGCCGGAAACGCGTGGCTGTTTCTTCCGGGAATCAACGTGCACGAGGAAAAAAAACACATGTGCGTAAATTTGATCTGTTAACTGGAATCAAGGATCGAATAAATACATTATACTTTAACTATTGCAAAGGTGGGTTTTGACTACCTGTGTAGGTGTCAGTCATGGGCAGGAAGTTGGATCCCACCACTTATGTGAAGAAGGGGCCGGGGCGGAAGTCCAGGAAGCAGAAAGGAGCAGAGACTGAGCTGGCCAAGTTCTTAACGGATGAGGATACTGCACCAAAACGACTGTCAAGCAGGTCCAGGAAAAGAGCTGGGAAGCGAGCTCAAGTGACCAAAAAGCCCAAGGAAAGCATTGAGAAGGAGGAGCCAAAAAAAGGATTCACAGATGAAAACAGTGAATGGCTGAAGCCAGCAAAGAGGAAGCGTGAGGTCGGCCAATCAGATAACGAGGACGACAGTGACAGCCAATGGGAGCAGGAAGAGGACgagggacaagagggaggggagaacaaTAAAGGGAAAAACATTCTAATTGAGGGAGATGGTGATGATAACGATGACCTGGTTGATGACTACGGTGCATTGGAGGACagcagtgaaggagagggagaagtagatGGTGATGGAGAGGAGCTGCTCCCCATCGAGCGAGCTGCCAGGAAGCAGAAGAAGCTGCAGGAAGCAATGGGCCAGGagagtggtgatgatgatgatgatgatgataataaggGGAAGAGTGGAGATGAAGACATGGATGAAGATGACACGGTACAGGCTAATTTAGATGATATGGACAAATTCATACTACCTGGAGCAGAGGAGATAGCAAAAGAGGGTGTTTTGCTTGTAGACCTGCAGACCATCCACCAGAGAATAAAGGACAACGTGGATGTTCTCTCTCACTTTGCaaccaagagagaggaggggaaagagagaacagagtacCTCTCTCTCCTCAAAAAGGATCTTTCCACTTACTACAGCTACAACAATTTCCTCATAGACAAACTGCTGGATATCTTCCCAGTGTCAGAGCTGATTGATTTCCTGGAGGCCAATGAAATTCAGCGACCTGTCACCATTCGGACCAATACACTGAAGACAAGGAGGAGGGACTTGGCTCAGGCCCTGATCAACAGAGGGGTGAATCTGGATCCTCTGGGGAAGTGGTCTAAAGTGGGCCTGGTCATCTTTGACTCCTCAGTACCCATCGGTGCGACCCCAGAGTACCTGGCTGGTCACTACATGCTGCAGGGAGCCTCCAGCTTCCTGCCTGTCATGGCTCTCTCTCCCCAGGAGGGGGAGACTGTGCTCGACATGAGCTCAGCTCCCGGGGGAAAGACCACCTATATGGCCCAGTTGATGAGGAACACAGGTGTGATTGTGGCCAATGATGCCAGTGCTGACAGACTGAAGAGTGTGGTGGGCAACATCCACCGTCTGGGAGTCACCAACTCAATGATCTGTAACTACGACGGGAGGCAGTTCCCTAAGGTAATGGGTGGGTTTGACAGAGTGCTGCTTGATGCTCCCTGCTCAGGCACAGGAGTAATCTCCAAAGACCCTGCTGTGAAGACCAGTAAAGACGAGTCTGACATCCAGCGGTTGGCCCACCTGCAGAAGGAGCTCATCCTGGCGGCCATCGACTCGGTCAACGCTGAGTCTCCCTCTGGAGGCTATCTGGTGTACTGCACATGCTCTATAATGGTGGAGGAGAACGAGTGGGTAGTGGACTATGCTCTCAAGAAAAGAAACGTCAAACTCGTCCAGACTGGACTGGACTTTGGCAAAGAAGGTTTCACCAGATTCAAAGAGAGACGATTCCATCCCTCTCTGAAACTCTCACGCCGGTTCTATCCTCATTCCCACAACATGGACGGTTTCTTTGTGGCCAAGCTGAAAAAGTTCTCCAACACGGTCCCAACCACAGCAGTTGAAAAAGACGGAGAAGAGGAAACCGAGCCATCTGAGGCAGTGGAGGTTACAGCTGATTCCTCTGATGAGGACGGACCATCTAATGCAGGGTCTAAGAACAAGTCCAAGAAGCAGAAGCCAGTCCCTGGCAAGCCAACTGTGTCACAGAAGACCACAGCCAACGGGAAGCCAGCCAAAAGCATCGGCAAGAAAACAACAAACCCAAGCACCTTGAAAAAGAATGAGAAACCAACCGGGCAGAAAAAGGCAAAGATCGCTAAGATGGATGGTGGGACTGTGAAAGTGGACGGAGAGCTCAAGAAGtccaacacagtcaaaacagaaGGGGAAACGACCAAACAGTCAAAGGAAGGGAGCAGGTTTGAGAAAAAGGGCGATAAACAGAGGAAATCCCCCATGCAGAGCAAGAAGAGAATGGGGAAGAACAAATTCAATAAGTTGAAGAAGCTGCTGAAAAAAGAAGAGGTTGGACAATGAACATGTATAAAATGTTTATGAAAATGAAGACTAATTATTTTGCAGTTGTCGCTAGTCAGAGAGGTCTAATTTTCATGACAGATCAGTAATTTTCACAAAAGTTGAGCAGAGCATGTTGGCGTTGTTAAATATTGCCTCCCTTCAGACTGAAAATCACTCAGGGCCCCCTTCGAAGGCCCTGAGCCTCAGCCCCTTTTGGAGTAGGTAGATGATGTCCCTAACCACACAGATACTGGATCAGAAATGTTTCATGGCCCTCGTGGATGATTGGTTCTAGGTTAGGAATATGGCAATATGATCCTAGCTCTGGTTGAGGGCAACGTTCTAACTTCAACTCTCGTTAAGCATCACAATTTCACATTTTATTCCTTCCTTGCAATGTTATCTGTTTGGTTTAATTTCATTTTGTGTCTTTTGGTCAAATTGATATGTATTGTAAAGACTAATCCTTGAGACAATAAAATGTTTCAGATTGTTTGCCATATACCCCC
>XM_021590266.2
CATTTTGCCTTCGTATATCACATGCGCCGGAAACGCGTGGCTGTTTCTTCCGGGAATCAACGTGCACGAGGAAAAAAAACACATGTGCGTAAATTTGATCTGTTAACTGGAATCAAGGATCGAATAAATACATTATACTTTAACTATTGCAAAGACTACCTGTGTAGGTGTCAGTCATGGGCAGGAAGTTGGATCCCACCACTTATGTGAAGAAGGGGCCGGGGCGGAAGTCCAGGAAGCAGAAAGGAGCAGAGACTGAGCTGGCCAAGTTCTTAACGGATGAGGATACTGCACCAAAACGACTGTCAAGCAGGTCCAGGAAAAGAGCTGGGAAGCGAGCTCAAGTGACCAAAAAGCCCAAGGAAAGCATTGAGAAGGAGGAGCCAAAAAAAGGATTCACAGATGAAAACAGTGAATGGCTGAAGCCAGCAAAGAGGAAGCGTGAGGTCGGCCAATCAGATAACGAGGACGACAGTGACAGCCAATGGGAGCAGGAAGAGGACgagggacaagagggaggggagaacaaTAAAGGGAAAAACATTCTAATTGAGGGAGATGGTGATGATAACGATGACCTGGTTGATGACTACGGTGCATTGGAGGACagcagtgaaggagagggagaagtagatGGTGATGGAGAGGAGCTGCTCCCCATCGAGCGAGCTGCCAGGAAGCAGAAGAAGCTGCAGGAAGCAATGGGCCAGGagagtggtgatgatgatgatgatgatgataataaggGGAAGAGTGGAGATGAAGACATGGATGAAGATGACACGGTACAGGCTAATTTAGATGATATGGACAAATTCATACTACCTGGAGCAGAGGAGATAGCAAAAGAGGGTGTTTTGCTTGTAGACCTGCAGACCATCCACCAGAGAATAAAGGACAACGTGGATGTTCTCTCTCACTTTGCaaccaagagagaggaggggaaagagagaacagagtacCTCTCTCTCCTCAAAAAGGATCTTTCCACTTACTACAGCTACAACAATTTCCTCATAGACAAACTGCTGGATATCTTCCCAGTGTCAGAGCTGATTGATTTCCTGGAGGCCAATGAAATTCAGCGACCTGTCACCATTCGGACCAATACACTGAAGACAAGGAGGAGGGACTTGGCTCAGGCCCTGATCAACAGAGGGGTGAATCTGGATCCTCTGGGGAAGTGGTCTAAAGTGGGCCTGGTCATCTTTGACTCCTCAGTACCCATCGGTGCGACCCCAGAGTACCTGGCTGGTCACTACATGCTGCAGGGAGCCTCCAGCTTCCTGCCTGTCATGGCTCTCTCTCCCCAGGAGGGGGAGACTGTGCTCGACATGAGCTCAGCTCCCGGGGGAAAGACCACCTATATGGCCCAGTTGATGAGGAACACAGGTGTGATTGTGGCCAATGATGCCAGTGCTGACAGACTGAAGAGTGTGGTGGGCAACATCCACCGTCTGGGAGTCACCAACTCAATGATCTGTAACTACGACGGGAGGCAGTTCCCTAAGGTAATGGGTGGGTTTGACAGAGTGCTGCTTGATGCTCCCTGCTCAGGCACAGGAGTAATCTCCAAAGACCCTGCTGTGAAGACCAGTAAAGACGAGTCTGACATCCAGCGGTTGGCCCACCTGCAGAAGGAGCTCATCCTGGCGGCCATCGACTCGGTCAACGCTGAGTCTCCCTCTGGAGGCTATCTGGTGTACTGCACATGCTCTATAATGGTGGAGGAGAACGAGTGGGTAGTGGACTATGCTCTCAAGAAAAGAAACGTCAAACTCGTCCAGACTGGACTGGACTTTGGCAAAGAAGGTTTCACCAGATTCAAAGAGAGACGATTCCATCCCTCTCTGAAACTCTCACGCCGGTTCTATCCTCATTCCCACAACATGGACGGTTTCTTTGTGGCCAAGCTGAAAAAGTTCTCCAACACGGTCCCAACCACAGCAGTTGAAAAAGACGGAGAAGAGGAAACCGAGCCATCTGAGGCAGTGGAGGTTACAGCTGATTCCTCTGATGAGGACGGACCATCTAATGCAGGGTCTAAGAACAAGTCCAAGAAGCAGAAGCCAGTCCCTGGCAAGCCAACTGTGTCACAGAAGACCACAGCCAACGGGAAGCCAGCCAAAAGCATCGGCAAGAAAACAACAAACCCAAGCACCTTGAAAAAGAATGAGAAACCAACCGGGCAGAAAAAGGCAAAGATCGCTAAGATGGATGGTGGGACTGTGAAAGTGGACGGAGAGCTCAAGAAGtccaacacagtcaaaacagaaGGGGAAACGACCAAACAGTCAAAGGAAGGGAGCAGGTTTGAGAAAAAGGGCGATAAACAGAGGAAATCCCCCATGCAGAGCAAGAAGAGAATGGGGAAGAACAAATTCAATAAGTTGAAGAAGCTGCTGAAAAAAGAAGAGGTTGGACAATGAACATGTATAAAATGTTTATGAAAATGAAGACTAATTATTTTGCAGTTGTCGCTAGTCAGAGAGGTCTAATTTTCATGACAGATCAGTAATTTTCACAAAAGTTGAGCAGAGCATGTTGGCGTTGTTAAATATTGCCTCCCTTCAGACTGAAAATCACTCAGGGCCCCCTTCGAAGGCCCTGAGCCTCAGCCCCTTTTGGAGTAGGTAGATGATGTCCCTAACCACACAGATACTGGATCAGAAATGTTTCATGGCCCTCGTGGATGATTGGTTCTAGGTTAGGAATATGGCAATATGATCCTAGCTCTGGTTGAGGGCAACGTTCTAACTTCAACTCTCGTTAAGCATCACAATTTCACATTTTATTCCTTCCTTGCAATGTTATCTGTTTGGTTTAATTTCATTTTGTGTCTTTTGGTCAAATTGATATGTATTGTAAAGACTAATCCTTGAGACAATAAAATGTTTCAGATTGTTTGCCATATACCCCC
>XM_036969015.1
TGCACGAGGAAAAAAAACACATACTACCTGTGTAGGTGTCAGTCATGGGCAGGAAGTTGGATCCCACCACTTATGTGAAGAAGGGGCCGGGGCGGAAGTCCAGGAAGCAGAAAGGAGCAGAGACTGAGCTGGCCAAGTTCTTAACGGATGAGGATACTGCACCAAAACGACTGTCAAGCAGGTCCAGGAAAAGAGCTGGGAAGCGAGCTCAAGTGACCAAAAAGCCCAAGGAAAGCATTGAGAAGGAGGAGCCAAAAAAAGGATTCACAGATGAAAACAGTGAATGGCTGAAGCCAGCAAAGAGGAAGCGTGAGGTCGGCCAATCAGATAACGAGGACGACAGTGACAGCCAATGGGAGCAGGAAGAGGACgagggacaagagggaggggagaacaaTAAAGGGAAAAACATTCTAATTGAGGGAGATGGTGATGATAACGATGACCTGGTTGATGACTACGGTGCATTGGAGGACagcagtgaaggagagggagaagtagatGGTGATGGAGAGGAGCTGCTCCCCATCGAGCGAGCTGCCAGGAAGCAGAAGAAGCTGCAGGAAGCAATGGGCCAGGagagtggtgatgatgatgatgatgatgataataaggGGAAGAGTGGAGATGAAGACATGGATGAAGATGACACGGTACAGGCTAATTTAGATGATATGGACAAATTCATACTACCTGGAGCAGAGGAGATAGCAAAAGAGGGTGTTTTGCTTGTAGACCTGCAGACCATCCACCAGAGAATAAAGGACAACGTGGATGTTCTCTCTCACTTTGCaaccaagagagaggaggggaaagagagaacagagtacCTCTCTCTCCTCAAAAAGGATCTTTCCACTTACTACAGCTACAACAATTTCCTCATAGACAAACTGCTGGATATCTTCCCAGTGTCAGAGCTGATTGATTTCCTGGAGGCCAATGAAATTCAGCGACCTGTCACCATTCGGACCAATACACTGAAGACAAGGAGGAGGGACTTGGCTCAGGCCCTGATCAACAGAGGGGTGAATCTGGATCCTCTGGGGAAGTGGTCTAAAGTGGGCCTGGTCATCTTTGACTCCTCAGTACCCATCGGTGCGACCCCAGAGTACCTGGCTGGTCACTACATGCTGCAGGGAGCCTCCAGCTTCCTGCCTGTCATGGCTCTCTCTCCCCAGGAGGGGGAGACTGTGCTCGACATGAGCTCAGCTCCCGGGGGAAAGACCACCTATATGGCCCAGTTGATGAGGAACACAGGTGTGATTGTGGCCAATGATGCCAGTGCTGACAGACTGAAGAGTGTGGTGGGCAACATCCACCGTCTGGGAGTCACCAACTCAATGATCTGTAACTACGACGGGAGGCAGTTCCCTAAGGTAATGGGTGGGTTTGACAGAGTGCTGCTTGATGCTCCCTGCTCAGGCACAGGAGTAATCTCCAAAGACCCTGCTGTGAAGACCAGTAAAGACGAGTCTGACATCCAGCGGTTGGCCCACCTGCAGAAGGAGCTCATCCTGGCGGCCATCGACTCGGTCAACGCTGAGTCTCCCTCTGGAGGCTATCTGGTGTACTGCACATGCTCTATAATGGTGGAGGAGAACGAGTGGGTAGTGGACTATGCTCTCAAGAAAAGAAACGTCAAACTCGTCCAGACTGGACTGGACTTTGGCAAAGAAGGTTTCACCAGATTCAAAGAGAGACGATTCCATCCCTCTCTGAAACTCTCACGCCGGTTCTATCCTCATTCCCACAACATGGACGGTTTCTTTGTGGCCAAGCTGAAAAAGTTCTCCAACACGGTCCCAACCACAGCAGTTGAAAAAGACGGAGAAGAGGAAACCGAGCCATCTGAGGCAGTGGAGGTTACAGCTGATTCCTCTGATGAGGACGGACCATCTAATGCAGGGTCTAAGAACAAGTCCAAGAAGCAGAAGCCAGTCCCTGGCAAGCCAACTGTGTCACAGAAGACCACAGCCAACGGGAAGCCAGCCAAAAGCATCGGCAAGAAAACAACAAACCCAAGCACCTTGAAAAAGAATGAGAAACCAACCGGGCAGAAAAAGGCAAAGATCGCTAAGATGGATGGTGGGACTGTGAAAGTGGACGGAGAGCTCAAGAAGtccaacacagtcaaaacagaaGGGGAAACGACCAAACAGTCAAAGGAAGGGAGCAGGTTTGAGAAAAAGGGCGATAAACAGAGGAAATCCCCCATGCAGAGCAAGAAGAGAATGGGGAAGAACAAATTCAATAAGTTGAAGAAGCTGCTGAAAAAAGAAGAGGTTGGACAATGAACATGTATAAAATGTTTATGAAAATGAAGACTAATTATTTTGCAGTTGTCGCTAGTCAGAGAGGTCTAATTTTCATGACAGATCAGTAATTTTCACAAAAGTTGAGCAGAGCATGTTGGCGTTGTTAAATATTGCCTCCCTTCAGACTGAAAATCACTCAGGGCCCCCTTCGAAGGCCCTGAGCCTCAGCCCCTTTTGGAGTAGGTAGATGATGTCCCTAACCACACAGATACTGGATCAGAAATGTTTCATGGCCCTCGTGGATGATTGGTTCTAGGTTAGGAATATGGCAATATGATCCTAGCTCTGGTTGAGGGCAACGTTCTAACTTCAACTCTCGTTAAGCATCACAATTTCACATTTTATTCCTTCCTTGCAATGTTATCTGTTTGGTTTAATTTCATTTTGTGTCTTTTGGTCAAATTGATATGTATTGTAAAGACTAATCCTTGAGACAATAAAATGTTTCAGATTGTTTGCCATATACCCCC

Function

NR:

description
probable 28S rRNA (cytosine-C(5))-methyltransferase

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0032259 methylation biological_process
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14835 NOP2; 25S rRNA (cytosine2870-C5)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590271.2 False 2934 mRNA 0.48 16 11623965 11630699
XM_021590266.2 False 2920 mRNA 0.48 16 11623969 11630699
XM_036969015.1 True 2788 mRNA 0.48 16 11624031 11630699

Neighbor

gene id symbol gene type direction distance location
LOC110509324 LOC106575899 coding upstream 10901 11610579 ~ 11613064 (+)
kel LOC106575861 coding upstream 15000 11602383 ~ 11608965 (+)
LOC110520911 zyx coding upstream 23482 11580308 ~ 11600483 (+)
LOC118944486 LOC106592935 coding upstream 122640 11496306 ~ 11501325 (+)
LOC118944450 LOC106605830 coding upstream 134133 11479797 ~ 11489832 (+)
LOC110509378 LOC106605735 coding downstream 144 11630843 ~ 11635397 (+)
ncapd2 ncapd2 coding downstream 4978 11635677 ~ 11654262 (+)
LOC118964380 NA coding downstream 6267 11636966 ~ 11637264 (+)
LOC118964379 NA coding downstream 8417 11639116 ~ 11639420 (+)
LOC118964381 NA coding downstream 9339 11640038 ~ 11640331 (+)
G224138 NA non-coding upstream 4853 11618687 ~ 11619112 (+)
G224116 LOC106575912 non-coding upstream 7990 11613566 ~ 11615975 (+)
G224134 NA non-coding upstream 47507 11576151 ~ 11576458 (+)
G224126 NA non-coding upstream 61984 11561759 ~ 11561981 (+)
G224105 NA non-coding upstream 71375 11552284 ~ 11552590 (+)
G224163 NA non-coding downstream 63124 11693823 ~ 11694023 (+)
G224165 NA non-coding downstream 65795 11696494 ~ 11696725 (+)
G224167 NA non-coding downstream 70353 11701052 ~ 11701355 (+)
G224177 NA non-coding downstream 121015 11751714 ~ 11751899 (+)
G224182 NA non-coding downstream 131249 11761948 ~ 11765453 (+)
G224052 gstk1 other upstream 187505 11433120 ~ 11436460 (+)
G224035 NA other upstream 232003 11391333 ~ 11391962 (+)
LOC110509074 LOC106576860 other upstream 449602 11166919 ~ 11174363 (+)
G223748 NA other upstream 580273 11041848 ~ 11043692 (+)
mrpl51 LOC100194563 other downstream 157830 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 383809 12005269 ~ 12053650 (+)
G224297 NA other downstream 390266 12020965 ~ 12022444 (+)
LOC110509826 LOC106576393 other downstream 628622 12259134 ~ 12357204 (+)
LOC110503596 LOC106576258 other downstream 738292 12368841 ~ 12430981 (+)

Expression


Co-expression Network