gapdh (LOC100135813)


Basic Information

Item Value
gene id gapdh
gene name LOC100135813
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11668497 ~ 11673146 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124209.1
GTCGTAAGACAGGATTGAGGCATCTCACAAACGAGGACTAGACCAACTCAGGCAAAATGGTGAAAGTAGGTGTCAATGGATTCGGCCGTATCGGGCGTCTGGTGACCCGTGCTGCATTCCACTCCAAGAAGGGAGTTGAGATTGTTGCCATCAACGACCCTTTCATCGACCTGGACTACATGGTCTACATGTTCAAGTATGACTCCACCCACGGACGTTTCCACGGTGAGGTCAAGGCTGAGGGTGGCAAGCTGGTCATCGATGGACACAAAATCACTGTGTTCCACGAGAGAGACCCAGCTAACATCAAGTGGGGAGATGCTGGTGCCACCTATGTAGTTGAGTCAACAGGTGTTTTCACCACCATTGAGAAGGCCTCTaccCATCTGAAGGGCGGTGCCAAGAGGGTTGTCATCTCTGCTCCCAGTGCTGATGCACCCATGTTCGTCATGGGCGTCAACCACGAGAAGTACGAGAACTCCCTCAAGGTTGTCAGCAATGCGTCATGCACAACCAACTGCCTGGCTCCCCTGGCCAAGGTCATCCACGATAACTACCACATCATTGAGGGTCTGATGAGCACCGTTCACGCCGTCACCGCCACCCAGAAGACTGTTGATGGTCCTTCTGGAAAGCTGTGGAGGGATGGACGTGGTGCCAGCCAGAACATCATCCCTGCCTCCACCGGAGCAGCCAAGGCTGTCGGCAAGGTCATCCCCGAGCTGAACGGCAAGATCACTGGCATGGCCTTCCGTGTCCCCACCCCCAACGTCTCAGTGGTGGACCTGACCGTCCGTCTGGAGAAGCCTGCCAGCTACGACGCCATCAAGAAGGTTGTCAAGGCTGCCGCCGATGGACCCATGAAGGGAATTCTCGGCTACACGGAGCAACAGGTTGTCTCTTCAGACTTCAACGGCGACACCCACTCCTCCATCTTTGATGCCGGCGCTGGCATTGCTCTGAACGACCACTTCGTCAAGCTGGTCACATGgtatGACAATGAGTTTGGCTACAGCAACCGCGTCATTGACCTGATGGCTCACATGGCCACCAAGGAGTAAAGCAACCAACCAAACGCTACCGAACTACGTCATGTGACCACATATTTCCCATTCGATTGGACTATCGCCCTTGCCTGAGAAAGTTACCCACATAAAAAATACCAATCACaactatatattttatttttgtaatgtGAAGACCCTTTTCTGGTCTTGTGAAAGGTGAGATGGAATCTGGGTGTGACGACATTTTCTGTTGAACTTGCTTCATTCAGAAGTGGAATAAAAGTCCTCTGTGTAAA

Function

NR:

description
glyceraldehyde 3-phosphate dehydrogenase

GO:

id name namespace
GO:0051402 neuron apoptotic process biological_process
GO:0006096 glycolytic process biological_process
GO:0035606 peptidyl-cysteine S-trans-nitrosylation biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0050821 protein stabilization biological_process
GO:0005829 cytosol cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0050661 NADP binding molecular_function
GO:0035605 peptidyl-cysteine S-nitrosylase activity molecular_function
GO:0051287 NAD binding molecular_function
GO:0008017 microtubule binding molecular_function
GO:0004365 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity molecular_function

KEGG:

id description
K00134 GAPDH, gapA; glyceraldehyde 3-phosphate dehydrogenase (phosphorylating)

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124209.1 True 1303 mRNA 0.52 11 11668497 11673146

Neighbor

gene id symbol gene type direction distance location
wu:fj39g12 cnp-1 coding upstream 7384 11658813 ~ 11661113 (+)
ncapd2 ncapd2 coding upstream 14235 11635677 ~ 11654262 (+)
LOC118964382 NA coding upstream 24737 11643456 ~ 11643760 (+)
LOC118964381 NA coding upstream 28166 11640038 ~ 11640331 (+)
LOC118964379 NA coding upstream 29077 11639116 ~ 11639420 (+)
LOC110509388 LOC106576962 coding downstream 7095 11680241 ~ 11682756 (+)
iffo1b LOC106576644 coding downstream 9920 11683066 ~ 11708251 (+)
LOC110509555 LOC106575195 coding downstream 35703 11708849 ~ 11727254 (+)
LOC110509537 LOC106575188 coding downstream 64804 11737950 ~ 11747921 (+)
LOC118936286 LOC106575183 coding downstream 80990 11754136 ~ 11776033 (+)
G224138 NA non-coding upstream 49385 11618687 ~ 11619112 (+)
G224116 LOC106575912 non-coding upstream 52522 11613566 ~ 11615975 (+)
G224134 NA non-coding upstream 92039 11576151 ~ 11576458 (+)
G224126 NA non-coding upstream 106516 11561759 ~ 11561981 (+)
G224105 NA non-coding upstream 115907 11552284 ~ 11552590 (+)
G224163 NA non-coding downstream 20677 11693823 ~ 11694023 (+)
G224165 NA non-coding downstream 23348 11696494 ~ 11696725 (+)
G224167 NA non-coding downstream 27906 11701052 ~ 11701355 (+)
G224177 NA non-coding downstream 78568 11751714 ~ 11751899 (+)
G224182 NA non-coding downstream 88802 11761948 ~ 11765453 (+)
LOC110520911 zyx other upstream 78153 11580308 ~ 11600483 (+)
G224052 gstk1 other upstream 232037 11433120 ~ 11436460 (+)
G224035 NA other upstream 276535 11391333 ~ 11391962 (+)
LOC110509074 LOC106576860 other upstream 494134 11166919 ~ 11174363 (+)
G223748 NA other upstream 624805 11041848 ~ 11043692 (+)
mrpl51 LOC100194563 other downstream 115383 11788492 ~ 11790660 (+)
LOC110537447 LOC106577011 other downstream 341362 12005269 ~ 12053650 (+)
G224297 NA other downstream 347819 12020965 ~ 12022444 (+)
LOC110509826 LOC106576393 other downstream 586175 12259134 ~ 12357204 (+)
LOC110503596 LOC106576258 other downstream 695845 12368841 ~ 12430981 (+)

Expression


Co-expression Network