LOC118936286 (LOC106575183)


Basic Information

Item Value
gene id LOC118936286
gene name LOC106575183
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11754136 ~ 11776033 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969103.1
gggaaggaggcaggatAGGGAGGGACCGAATCAAAGACAGAAAGACGGAGAGCCAACAGAAACGAAAGATGACTGTCTGAATCAACATGGATCCAACCGAAGCCAGCCTTTCCTCAAAAGAAACAACGTCTTTCAATGAAGGAAGGGGAGGTGATGTGACTCAGCCAGAGGAAGTGGTGGAGcagtggaggaatggaggagaggaagagagacagagggaggtggagagagaggcggGCGTGACAGATGGACTAACTCTGGCTGCAGAGACAACTACCaaccacagggtgtcagcagacCAACGCAGATTCAATACTGTGGGATACCATAGGAAGCTGAAGCATAAAGTGGTGGCAGACTATACCACGGTGAGTAAGGGAGCGTCTGGAAGTTTCAAACCCCGAGCAGCACTGAGACAGGTCCTGTTCAGCCAGGGAGCGACTGACAAGAGCCCCATGCCTGAGggcGCAGGGCAGTTGGATGCTCTGAAGCGGACTCTGGAGGCGTTCCCAGTACCAGTGTGTCTGAACTGGAGCTTGgggggggagaggacaggagccACACTGGAGAACAACTGGACTGATATAGTACACAATCACTCGatGATGTGTAAGACCCAGAGGCACCAACAGGAGGTGCTGTGGGAGTTGGTCCATACTGAGCTCACCTACATCAACAAGCTCACTGTTGTCACTGACTTGGTGATGGCAGCTCTTACCAACCTGCACCAGCATGGATTCCTCTTAGAGGTGGCACCTGAGAGCCTCTTCTCCAACCTTCCCTCCATCCTCAGCGCCCACCGGCTCTTCTGGCAGGAAGTGATGTATCCCATGTTACAGGAAGTCCGCAGGACGGGGAAGCCCTTTGACCCCCTGGGGTTAGAGGCAGGATGCCTGCAGTTCCCTGAGCGTTTCTCCACCTATCTGCACTACTGTTGTAAGGAGGAGAGCACCGTGGACATTACGAGCAAACTGACAGACACCAACCTGCACTTCCACACCTACTTAATGTGGGTGGAGACACACCCCCAGTGTGAGCGGATGCGTCTGGGAGACATGCAGGCCAAACCCATCCAGAGGATCACCAAGTACCCCCTGCTGCTGAAGGCTGTCCTCAAGACCACCCAGGCTCCCCACACTCAGCACACACTCAGGGGCATGttggCTTGTGTTAATGGGTTTCTGGACAGCATCAATGACTACTTGAGGCTTAAGGATGATGAGCAGGCCCTCTCGCTTTCCGCCCAGAAGATAGAGGGATATGACGTGATGGAGGGGATGAATGAGGAAATCGACAAGCATGTCAGAGAGTTCTGCAGTTTTGATTTGACGTGCCCTGTCAGAGGGGTGGGTCCTGGTGTCATACGCAAGCTGCTATTGGAGGAGACCCTGAAGATCAGAGGAAGGAAGGATCACAAGCTGGAGGTGACAGCCCTGCTCTTCTCTGACGTGCTGCTGGTGACCAAGGTCCAGAAGAAGGCAGAGAGACTGAAGGTAGTTCGCCCCCCACTGGCCCTGGATAGAACACACTGTGACACACTCAAAGATGGCTgttcgtttgtggtggtggaggtgagtgttCTGGGCTGTGCGgcaaatgtctacaccttttccaCCTCCAGCCCAGAGAGCTGCTCTACATGGATCTTCACCATCCACAAGGCACAGGAAACACTGCAGggcctgagagagacagaggccagCAGACGACTGCAGACCAAACAGAGAGACCTACAGCTACAGGAACAAGCCACACCCCCTACAGAGCCCAAGATTACCATTGTAGATCAGCTTCCTGACCAATCAGAAGCACAAATCCCTTTTTCTTTGGAGGTGAAACCTGTTGAGGAACTTCTCATCCAATCAGTGAATGGGACATTGGTGTCCATAGCAACAGAAGCGGAACAACCAACTCAGGAACCAGTGCTCTATAAAGATGAAATGTTGCCAGGACAACCACGCAagctcagtgacattcataaCCAATCATTTGCAGGCGGGGTAATGAAAAAGGGGCAAGGAGGTGGCAGGGTCATGGATGAGGTTATGATGTCAGAGGCAAGGGTGAGCGAGATTGGAGACATCAACCAATGGGAGGAGGGGATTGAGTCCAGGGGGATAAAAGAACGAAGGGTGACCTGGACCCATTCCAGACCGTCTAACTCTCTACCTCGAGTGGCAACAGAAACCTTTCAACCCAAACCCAACGGGCCGCACAACCTGTTGCTAGGCGGATATCCTAACATAGATCACGACATAGACTACCCACGACACCAATCCAGCACTTTCCCACTTTCTCCATGCAGGGAAAACAATGAAAAGGTTTCTATCACTATTAGTCCAATGGAATCCCAAGGATTTCTCTCACAGGGAGGACGAGCCACATCCACACGGAGGAATTCTGTCCCCCAGTCAGTGGAGCAACAAGCCATGAGGAACTCGTGGCTCACCCAATCAGGAGAGGAGGCTTTAGTGGAATCACGGAGGTTTTCTCGGAAGCTGAATTCACCACGGTTACGCAGGAGAAGGCCAATAAACATTGAGCAGACTGCTGCCcctcagatgtcacaaagtggaTCTGACAGCTCTGGGATGGCCCAGTCTGAACCACACACAAACTCTTCCTCCAACTCTGATTCAGACTGCAACCAGAAACTCAGGGGTTCCTACCAACACAACTCAGGTTCCTCCGGACAGAGCTCTGACTCTCACCTGGTGCTCAAGCTGGGGTCCTTGAAGATGAACGGAGGGGTGTTCTGGGACATGCCTGCAGAGAGAGAGTCCTCCCCAGAGCCCCACGCTTTCTCTAGGCCAGAGCTGCCTAAAGCCATCCCAGAAGAAAAAGAAAACACCCCAAAAAGCACTAAGTTGAAGACCCAGAGGAGCACGTCCATACCAGATATCAGCTTCCAAGGAGGATATAATTCTCTTCTGACCTCAGCCAAGCCCTCCAACGCGCGAATagcccactctccccctcctggGTTGGATCCATACTTGCACCCCTCCCCTCTGGAGAGCATTTTGAACCGGGCCAAGGAGAGAagaaaggacagagggagaagagagggacaggggaaaTCTCCAACCTTCAGAACATGGGCTCTTCCTCCTTCTCCGTCTTTCTCCACCACTCCGTCCCAGTCGCCCAGTgaaggggatagagagactgAGTGGGAAGAGGTGGAGCTGGTCAGACGGCTGGCCCccagatggatagaggagagggtggaCGGAGATGAGGAGAAGAAGAGCAGCCCCGCCTTCCCTGATGGCACCAGCGTTGATTGGGCAGGCTGGTGCTTTGAAGCCGATGAGGTCCTGGATCAGCTGACCCCAGAGGACAGTTGCGTTGGGGTTGATGAGGAGTGGTGGGAAGCGGCTGAGGTGGGGCTCAGCCAAACTTTGACCTTGAGAGACTTCCAGCGAATCGGCACGCATGAGGACGGGACGATTAGTCAGGTGTAGTTCTGCATAGGGTACTGGGAGTCCTTCATTCTCCAAGACTTTATCTGCACTTTATGGGGAATAATATGTCATTTGAGATTTTCACTGTGCCGGAGTAGACATATAACAACGTGATACTTTTCCACAGCAAGATGTTGATTGAGTGAGCTGATTGACACCAAATGTTGAATTTCAGTTTGTTGCATGGAATGTTTGTGAGTGATTTGGAGTTTGTGATTATGAGTCTGAGTGAACATCAGAATCATTTTCTTCAACCTGCATAATATTGTTagagctacagatgtaggatcttcatttgatccctcttttgttgctgaggTTTTTCCTGCAACGCTGGAAATGCAGATaagctttgtgatttacataaatgtactgaaaacccacaccaacacatggttatattaacaatattgcacttttcatgtagcctacttttggctgatcaagcaacattatggactaattgttcaaatcctgttgctgtagcattattaagatcctacatctgtagacgcCTGTACTGTCTTATACACGTGTACTTTTTTGATGTTTTGTCAGTTAAGTGAAATGCTCTACATACTGCACATACATGTTTCATTGAACTTAATTTGAGTTGTTAATTTATAAGAGTAACTGCATATTTGGTATTGTGACCCATTGGGGAGATTCATACTGATACATTGtaataaagagagagatttaAACCAA
>XM_021590317.2
ggcatcaccaagcaagcagcatcaccaagcaagcggcaccaccaaGCCAACAGCACTATGAAGAACAAGgatctctccaaacagatGATGTGTAAGACCCAGAGGCACCAACAGGAGGTGCTGTGGGAGTTGGTCCATACTGAGCTCACCTACATCAACAAGCTCACTGTTGTCACTGACTTGGTGATGGCAGCTCTTACCAACCTGCACCAGCATGGATTCCTCTTAGAGGTGGCACCTGAGAGCCTCTTCTCCAACCTTCCCTCCATCCTCAGCGCCCACCGGCTCTTCTGGCAGGAAGTGATGTATCCCATGTTACAGGAAGTCCGCAGGACGGGGAAGCCCTTTGACCCCCTGGGGTTAGAGGCAGGATGCCTGCAGTTCCCTGAGCGTTTCTCCACCTATCTGCACTACTGTTGTAAGGAGGAGAGCACCGTGGACATTACGAGCAAACTGACAGACACCAACCTGCACTTCCACACCTACTTAATGTGGGTGGAGACACACCCCCAGTGTGAGCGGATGCGTCTGGGAGACATGCAGGCCAAACCCATCCAGAGGATCACCAAGTACCCCCTGCTGCTGAAGGCTGTCCTCAAGACCACCCAGGCTCCCCACACTCAGCACACACTCAGGGGCATGttggCTTGTGTTAATGGGTTTCTGGACAGCATCAATGACTACTTGAGGCTTAAGGATGATGAGCAGGCCCTCTCGCTTTCCGCCCAGAAGATAGAGGGATATGACGTGATGGAGGGGATGAATGAGGAAATCGACAAGCATGTCAGAGAGTTCTGCAGTTTTGATTTGACGTGCCCTGTCAGAGGGGTGGGTCCTGGTGTCATACGCAAGCTGCTATTGGAGGAGACCCTGAAGATCAGAGGAAGGAAGGATCACAAGCTGGAGGTGACAGCCCTGCTCTTCTCTGACGTGCTGCTGGTGACCAAGGTCCAGAAGAAGGCAGAGAGACTGAAGGTAGTTCGCCCCCCACTGGCCCTGGATAGAACACACTGTGACACACTCAAAGATGGCTgttcgtttgtggtggtggaggtgagtgttCTGGGCTGTGCGgcaaatgtctacaccttttccaCCTCCAGCCCAGAGAGCTGCTCTACATGGATCTTCACCATCCACAAGGCACAGGAAACACTGCAGggcctgagagagacagaggccagCAGACGACTGCAGACCAAACAGAGAGACCTACAGCTACAGGAACAAGCCACACCCCCTACAGAGCCCAAGATTACCATTGTAGATCAGCTTCCTGACCAATCAGAAGCACAAATCCCTTTTTCTTTGGAGGTGAAACCTGTTGAGGAACTTCTCATCCAATCAGTGAATGGGACATTGGTGTCCATAGCAACAGAAGCGGAACAACCAACTCAGGAACCAGTGCTCTATAAAGATGAAATGTTGCCAGGACAACCACGCAagctcagtgacattcataaCCAATCATTTGCAGGCGGGGTAATGAAAAAGGGGCAAGGAGGTGGCAGGGTCATGGATGAGGTTATGATGTCAGAGGCAAGGGTGAGCGAGATTGGAGACATCAACCAATGGGAGGAGGGGATTGAGTCCAGGGGGATAAAAGAACGAAGGGTGACCTGGACCCATTCCAGACCGTCTAACTCTCTACCTCGAGTGGCAACAGAAACCTTTCAACCCAAACCCAACGGGCCGCACAACCTGTTGCTAGGCGGATATCCTAACATAGATCACGACATAGACTACCCACGACACCAATCCAGCACTTTCCCACTTTCTCCATGCAGGGAAAACAATGAAAAGGTTTCTATCACTATTAGTCCAATGGAATCCCAAGGATTTCTCTCACAGGGAGGACGAGCCACATCCACACGGAGGAATTCTGTCCCCCAGTCAGTGGAGCAACAAGCCATGAGGAACTCGTGGCTCACCCAATCAGGAGAGGAGGCTTTAGTGGAATCACGGAGGTTTTCTCGGAAGCTGAATTCACCACGGTTACGCAGGAGAAGGCCAATAAACATTGAGCAGACTGCTGCCcctcagatgtcacaaagtggaTCTGACAGCTCTGGGATGGCCCAGTCTGAACCACACACAAACTCTTCCTCCAACTCTGATTCAGACTGCAACCAGAAACTCAGGGGTTCCTACCAACACAACTCAGGTTCCTCCGGACAGAGCTCTGACTCTCACCTGGTGCTCAAGCTGGGGTCCTTGAAGATGAACGGAGGGGTGTTCTGGGACATGCCTGCAGAGAGAGAGTCCTCCCCAGAGCCCCACGCTTTCTCTAGGCCAGAGCTGCCTAAAGCCATCCCAGAAGAAAAAGAAAACACCCCAAAAAGCACTAAGTTGAAGACCCAGAGGAGCACGTCCATACCAGATATCAGCTTCCAAGGAGGATATAATTCTCTTCTGACCTCAGCCAAGCCCTCCAACGCGCGAATagcccactctccccctcctggGTTGGATCCATACTTGCACCCCTCCCCTCTGGAGAGCATTTTGAACCGGGCCAAGGAGAGAagaaaggacagagggagaagagagggacaggggaaaTCTCCAACCTTCAGAACATGGGCTCTTCCTCCTTCTCCGTCTTTCTCCACCACTCCGTCCCAGTCGCCCAGTgaaggggatagagagactgAGTGGGAAGAGGTGGAGCTGGTCAGACGGCTGGCCCccagatggatagaggagagggtggaCGGAGATGAGGAGAAGAAGAGCAGCCCCGCCTTCCCTGATGGCACCAGCGTTGATTGGGCAGGCTGGTGCTTTGAAGCCGATGAGGTCCTGGATCAGCTGACCCCAGAGGACAGTTGCGTTGGGGTTGATGAGGAGTGGTGGGAAGCGGCTGAGGTGGGGCTCAGCCAAACTTTGACCTTGAGAGACTTCCAGCGAATCGGCACGCATGAGGACGGGACGATTAGTCAGGTGTAGTTCTGCATAGGGTACTGGGAGTCCTTCATTCTCCAAGACTTTATCTGCACTTTATGGGGAATAATATGTCATTTGAGATTTTCACTGTGCCGGAGTAGACATATAACAACGTGATACTTTTCCACAGCAAGATGTTGATTGAGTGAGCTGATTGACACCAAATGTTGAATTTCAGTTTGTTGCATGGAATGTTTGTGAGTGATTTGGAGTTTGTGATTATGAGTCTGAGTGAACATCAGAATCATTTTCTTCAACCTGCATAATATTGTTagagctacagatgtaggatcttcatttgatccctcttttgttgctgaggTTTTTCCTGCAACGCTGGAAATGCAGATaagctttgtgatttacataaatgtactgaaaacccacaccaacacatggttatattaacaatattgcacttttcatgtagcctacttttggctgatcaagcaacattatggactaattgttcaaatcctgttgctgtagcattattaagatcctacatctgtagacgcCTGTACTGTCTTATACACGTGTACTTTTTTGATGTTTTGTCAGTTAAGTGAAATGCTCTACATACTGCACATACATGTTTCATTGAACTTAATTTGAGTTGTTAATTTATAAGAGTAACTGCATATTTGGTATTGTGACCCATTGGGGAGATTCATACTGATACATTGtaataaagagagagatttaAACCAA

Function

NR:

description
uncharacterized protein LOC110509410 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969103.1 False 4175 mRNA 0.51 15 11754136 11776033
XM_021590317.2 True 3657 mRNA 0.50 12 11761041 11776033

Neighbor

gene id symbol gene type direction distance location
LOC110509537 LOC106575188 coding upstream 6215 11737950 ~ 11747921 (+)
LOC110509555 LOC106575195 coding upstream 26882 11708849 ~ 11727254 (+)
iffo1b LOC106576644 coding upstream 45885 11683066 ~ 11708251 (+)
LOC110509388 LOC106576962 coding upstream 71380 11680241 ~ 11682756 (+)
gapdh LOC100135813 coding upstream 80990 11668497 ~ 11673146 (+)
mrpl51 LOC100194563 coding downstream 12459 11788492 ~ 11790660 (+)
LOC110509655 NA coding downstream 15197 11791230 ~ 11808120 (+)
tnfr tnfr coding downstream 61850 11837883 ~ 11858967 (+)
LOC110509543 LOC106576564 coding downstream 181739 11957772 ~ 11966128 (+)
LOC110509582 mlf2 coding downstream 204274 11927476 ~ 11985113 (+)
G224177 NA non-coding upstream 2237 11751714 ~ 11751899 (+)
G224167 NA non-coding upstream 52781 11701052 ~ 11701355 (+)
G224165 NA non-coding upstream 57411 11696494 ~ 11696725 (+)
G224163 NA non-coding upstream 60113 11693823 ~ 11694023 (+)
G224138 NA non-coding upstream 135024 11618687 ~ 11619112 (+)
G224183 LOC106605731 non-coding downstream 717 11776750 ~ 11777501 (+)
G224184 LOC106605850 non-coding downstream 1756 11777789 ~ 11778204 (+)
G224189 c1r/c1s non-coding downstream 9454 11785487 ~ 11836170 (+)
G224197 NA non-coding downstream 32715 11808748 ~ 11809478 (+)
LOC110520911 zyx other upstream 163792 11580308 ~ 11600483 (+)
G224052 gstk1 other upstream 317676 11433120 ~ 11436460 (+)
G224035 NA other upstream 362174 11391333 ~ 11391962 (+)
LOC110509074 LOC106576860 other upstream 579773 11166919 ~ 11174363 (+)
G223748 NA other upstream 710444 11041848 ~ 11043692 (+)
LOC110537447 LOC106577011 other downstream 238475 12005269 ~ 12053650 (+)
G224297 NA other downstream 244932 12020965 ~ 12022444 (+)
LOC110509826 LOC106576393 other downstream 483288 12259134 ~ 12357204 (+)
LOC110503596 LOC106576258 other downstream 592958 12368841 ~ 12430981 (+)

Expression


Co-expression Network