LOC110509520 (lag-3)


Basic Information

Item Value
gene id LOC110509520
gene name lag-3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11776055 ~ 11779268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590439.2
CAAGAGATCAAAGAGGGACACAGATACTAAGCTAGTTTTGCAACAACAATCTGTTGATCAAAACTTCAGAAGGAAGGAGAAAAGAAGAGACCATGTGGCAGTTTCTCCTTCTCTTGggaacatccctgttagtgacagGGGGTCggtgtcagtgtctgtctgagtATACTGAGATGTTCGCAGAGGCAGGGTCCCAGGCAGTGTTACCCTGCACTTGTCGCTCTCCCTCCGCCTCTGCAGCCATCGTCCTCTGGAGCAAGGACCTTGAGGGgaCAGTATGGAGAAAGGGAAAGAGTGGACTGGAGCACTGGGGAATAGGAGCTGCCCAGCGTGTTCGATGCCCCCATTCAGAGGTTGGATCTGGTGACTACAGCCTGTACATAaaggaggtgagggaggaggaCAGCGGGAAGTACACCTGCATGGTGCAGGACGGCGAGAAAATCCTCTCTAAGAGGATCCTCCTCAgggtcatcaaagTATCCATCTCCCCACCTGCTCCAGTGGAGGGCAACAAAATGACAATCACTTGCAGTGTCTCTCCATGGCCACAGGAGGCGACAGTGAGCTGGATGCTCAACGAGAAGCGAGTTTACCCTGACAGTGCAGATTACGTCCTTTCAAAGAACCAGGCGAGTGTTTTGGAGAGCAAGGCATCTGCAGGCATGATGGGTAACTGGAGCTGTGTAGTGCATAAAGGGAGGAAACAAGGGAAGGCCACCACGGCCCTGACAGTGAGAGGTATCGTTAACCCCTCCAGTGCCAGTGCCAAGATGTATGCTGAAGTGGGGTCTGCTGTCACCCTCCCCTGTATGTTCTCCACTGGACTCACCCCATCAGACACAGCCTGGGAGAGACTGGACATCTCTGGCTCtgctctcccactccctccctccttcaacCTGACCTCCctgctatccctccctccctgggaCAGGTCTGTGGGTGTGGGGCAAGTGGGGCAGGGCGACGGGGGCAGGTACAGGTGCTCAGGGACAGTGGAGGGGCGCCGGGTGACCAAGGAGATGCAGTTGGTGACTGCCCAAGTGCTCAGCAACTCACCATCTACCCAGAAGGCCCCAGTCTCACTGACCTGTCACCTCAGCAACGCCAGCGAGGTCACTGAATACGAGTGGGTCCGAGTGACCTATGACCTCAATGGCACCCAATCAGAGAGCTCCGTCCAGACAGGGAGGGTCCTGGGGAtcaacagagtgacagacaggaacTCTGGCGAATGGGCTTGTCGATTCCACGGGAAAAAAGGAGTTCTAGGGAGCGTGACATACCACCTACATCTGATGAGTGGTCTGATGGGAGATAAAGAGACAGGTTCTTCCAGTAATGTTGCCATGGTAGCCGGCCTGGGTTTCTTCCTCTTGGTGCTGCTGTTGGTCTTGGTGCAGATGTACAGGAACTATCGGAGGCGCAAGCTGATCCTGCAGTACCCTGCCCTGGAGACCATTGTTCACACCATTGCtaatgagagagaggacagagagaggaacagagtgaaAGAAGATGAGATCTCCAAATAGAGGAGTCTCTGCAATATGACTTTCGAAATCATTTGACATGTCTACGATCAGTTGGGAGATTGTGGTATTTGTACATATTAATTCAGTGCAGACAATTGTAGCAGTTTCTTTCATATTTTCACCAAAACAAATGTGATTGATCTTTTATTTGAAATGTGACTGATTTTGTATATGTATGCCTTATTTTTCACTACCGGCACCTTAACCACCTATTAGACTTTTGTAATATAATGACTGAGAA

Function

NR:

description
lymphocyte activation gene 3 protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590439.2 True 1779 mRNA 0.52 8 11776055 11779268

Neighbor

gene id symbol gene type direction distance location
LOC110509576 LOC106576947 coding downstream 37999 11727284 ~ 11741584 (-)
LOC110509335 NA coding downstream 161217 11613213 ~ 11614838 (-)
fam131bb fam131b coding downstream 227314 11503867 ~ 11548741 (-)
LOC110509245 LOC106576972 coding downstream 321689 11449258 ~ 11454366 (-)
LOC110509171 LOC100196661 coding downstream 339427 11433118 ~ 11436628 (-)
LOC110509592 LOC100136300 coding upstream 28845 11808113 ~ 11811663 (-)
c1r c1r/c1s coding upstream 40345 11819613 ~ 11825101 (-)
LOC110509614 ret1 coding upstream 79450 11858718 ~ 11862407 (-)
LOC110509511 ptn6 coding upstream 83721 11862989 ~ 11895102 (-)
LOC110509399 LOC106576265 coding upstream 116375 11895643 ~ 11950574 (-)
G224869 NA non-coding downstream 22375 11752851 ~ 11753680 (-)
G224868 NA non-coding downstream 23265 11752418 ~ 11752790 (-)
G224867 NA non-coding downstream 25303 11750053 ~ 11750752 (-)
G224836 NA non-coding downstream 67807 11706135 ~ 11708248 (-)
G224838 NA non-coding downstream 71915 11702921 ~ 11704140 (-)
G224874 NA non-coding upstream 2142 11781410 ~ 11781727 (-)
G224870 NA non-coding upstream 26869 11806137 ~ 11808096 (-)
G224899 NA non-coding upstream 37792 11817060 ~ 11819210 (-)
G224918 NA non-coding upstream 84542 11863810 ~ 11865070 (-)
G224919 NA non-coding upstream 86094 11865362 ~ 11865765 (-)
G223969 LOC106605840 other downstream 497427 11275917 ~ 11278628 (-)
G223942 LOC106576860 other downstream 601688 11172120 ~ 11174367 (-)
znf628 LOC106605829 other downstream 702305 11068525 ~ 11079570 (-)
G224873 NA other upstream 16622 11795890 ~ 11796309 (-)
G224954 LOC106576536 other upstream 235658 12014926 ~ 12016101 (-)
G224988 LOC106605856 other upstream 292019 12071287 ~ 12081233 (-)
G225099 NA other upstream 556973 12336241 ~ 12340966 (-)

Expression


Co-expression Network