LOC110509592 (LOC100136300)


Basic Information

Item Value
gene id LOC110509592
gene name LOC100136300
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 11808113 ~ 11811663 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969135.1
cctgagcGCGGAACAGTTTTTAGCAGAGCGTTGGAATAGACAACGTGTTTTGTACGTTGTTTGTTCTATACAAAGGCAAGGTTATGTTGATTACTTCAGCATCATTGTTTAGCATCCATACAACTCCATTTAGTGCATAGTAAGTAATGCCTAACTTGGCTCACTCGTACTATATAGTATAACACTCAGATACACATAACAGCAGCGCCATCTATTGGTTTGGCTAACTATGATCACATGTTATGGACACATTTATTTCAGCAACTAATGAGGGATGAGGTTATTGCTCTGGAGGATATGCTGAAAAATGGACAACTCTCTTTCACTTTAATTCAGCAAAGTTTCTCTAAATTCTACAATGACGCACTAGCTTCGAACGCTGAAAACAAACTATAGCGCAATGGGAAACACACGCTGGAAACATGGCATCTATTAATCGGTGTTTGATAAATCAATGGGtctcatcattcttattattctTATCAAACCCTAGACGTTCAACGCGAACTTTTAATCGACCATGTATTTTACTTGATTTATTTGGTTTACCTTCAAACAAAAGTAACTTCACGGTATAACAGCCTAACATTTTCACTGTATCAAAATAGTTTTCTTATATCTTCGACTGTGATTTCGAGCGTGGTCATTAATTCAATTATGCAATCAGGGGTCTATTCTGTATATTTCTGAAAAGTCAGTCATTACTGATGACAAAAAAAACTACTGGAAAGATGCTTGAAATGCTGCTTTTTGGATATTTGATTACATGCGTTTCTGGTAAGAATTTTTTGTCTTCACTCCCGACATTTTCTAAACATAAAATAGCGGTATATTCTGGACTCTTAGGCCAGGGACGAGCAGACGTGGTGCTGTCCTGTTCTCTGgtggaggagagtagtggggtgGGGGAAATGGGAGGTGGGGCTCTCTTCAGCCTCACCTCAGCCACGCTTGTcctcagagacctggccgtgaCCCCTGATCTTTCACCTGATACTCTGACCCCCTTCAACCCTCCTGCTGTCCCCGATCCTGACAACATCATCTTGGAGACTAAAGTTGAGTCTCACGAGATCCCAGAGGCAGACCTGCTGCTCCACGCTGACTGTAACGAGCAGGAAGTGACATGTGAGATCAGCCGCTACTTCCTTCATAAAGCAAAGGAGGTCTCCACAGAACCAGCTTATTTCATTGGCTCCTTGCAGATGGAGGGTGGCGTGCTCAGCCTCAAATTGGTCCTGCAGACACTGCCACTGGACCAATCAGATCGTCCAGCTCTCATACAAAGCAAACTGGAACTCACCCTCAGCCAATCAGGAACTTTGCTGACTGAGGTGGTGTTCCTGGTGTTCTCTCGCTCAGAGTCCCACTCTGCTCCTCTAGGGGGCGTGGCCTTCCTGGATGGCTTCAGGCAGCAGGCCCCACCCCCAGGGCAGGAGCTGGGGCTTGAGTGGCAGCACAGAGGAAGTGGAAGGAAAATGCTGGCGATTAGGGCAGGGCAGATGGAGGCGGAGGAGGGGCCAGCGGTACACGTGGAGAGGGAGGGTTCGAGCGTGGATgcctagcTTCTCTACACATATGAACATGCGTTTATTACATTAGGTGTCTATGTCATGTGTGACATAGTGTGCACACTATTCACATCTAAATACGAAGTCTCTCTGTCTTCAGAACCTcctcatgtttctctctctgaggaGAAGCTGGTATTTCGGGATGAGTTGCCCCAGAAACTGAGCTGCCACTGCAAGAACTACTACCCTCTGGATGTCCAGatGGAGTGGTTCTCCGTCTCCTCTACAGACTCAGAGCCAGGCGTTCTATCAGACCAGGTGTCTCTCTCCAGCCATCGGCAGCACAGCGACAGGACCATGTCCATCTCCTCCCACCTCACCCTGCACCCCTCCACCTTCCCCCCTGGAACCACGGTCACCTGCAGAGTGACCCACCCGGCCCTGGACACACCCCTCTCCCTCAGCCTGACAGTAGAGACACCTGAGCCAGATTACTACTGGATGGTCCTGGGTCTGGTTATCACCGTTCTGTTCTTCTACCAAGTGATGAAATAGGTAAGTTCCCCATGCTCCCTATGGACCTCCTTGTATTTTTAACTGTTGTTTGTAGTAAGACAACAGGAGCCTAGAGATGCGAAGCAAATTTCTGTCCAAACAgacaaataatacatttttcttcttttttttcttgcaTGTCTTAAGAGTTGCTGTAATGTGAATTACTGTTGTACTATAAACAGTTATACATTTTcttcaaataaatgttttctttGATAGTATCATTGGTGTTGTTCTCTGAATCTGGAGAGACGGTGTGGGATTAAACCTGTTCATTTTCACTTCAATGATGAAAACATTCATGTTGATG
>TU257132
TATGTCATGTGTGACATAGTGTGCACACTATTCACATCTAAATACGAAGTCTCTCTGTCTTCAGAACCTcctcatgtttctctctctgaggaGAAGCTGGTATTTCGGGATGAGTTGCCCCAGAAACTGAGCTGCCACTGCAAGAACTACTACCCTCTGGATGTCCAGatGGAGTGGTTCTCCGTCTCCTCTACAGACTCAGAGCCAGGCGTTCTATCAGACCAGGTGTCTCCTCTCCAGCCATCGGCAGCACAGCGACAGGACCATGTCCATCTCCTCCCACCTCACCCTGCACCCCTCCACCTTCCCCCCTGGAACCACGGTCACCTGCAGAGTGACCCACCCGGCCCTGGACACACCCC

Function

NR:

description
tapasin-related precursor

GO:

id name namespace
GO:0019885 antigen processing and presentation of endogenous peptide antigen via MHC class I biological_process
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969135.1 False 2382 mRNA 0.46 11 11808113 11811663
TU257132 True 362 TUCP 0.40 2 11808783 11809346

Neighbor

gene id symbol gene type direction distance location
LOC110509520 lag-3 coding downstream 28845 11776055 ~ 11779268 (-)
LOC110509576 LOC106576947 coding downstream 70057 11727284 ~ 11741584 (-)
LOC110509335 NA coding downstream 193275 11613213 ~ 11614838 (-)
fam131bb fam131b coding downstream 259372 11503867 ~ 11548741 (-)
LOC110509245 LOC106576972 coding downstream 353747 11449258 ~ 11454366 (-)
c1r c1r/c1s coding upstream 7950 11819613 ~ 11825101 (-)
LOC110509614 ret1 coding upstream 47055 11858718 ~ 11862407 (-)
LOC110509511 ptn6 coding upstream 51326 11862989 ~ 11895102 (-)
LOC110509399 LOC106576265 coding upstream 83980 11895643 ~ 11950574 (-)
LOC110509608 LOC105029961 coding upstream 154535 11966198 ~ 11977986 (-)
G224870 NA non-coding downstream 17 11806137 ~ 11808096 (-)
G224874 NA non-coding downstream 26386 11781410 ~ 11781727 (-)
G224869 NA non-coding downstream 54433 11752851 ~ 11753680 (-)
G224868 NA non-coding downstream 55323 11752418 ~ 11752790 (-)
G224867 NA non-coding downstream 57361 11750053 ~ 11750752 (-)
G224899 NA non-coding upstream 5397 11817060 ~ 11819210 (-)
G224918 NA non-coding upstream 52147 11863810 ~ 11865070 (-)
G224919 NA non-coding upstream 53699 11865362 ~ 11865765 (-)
G224920 NA non-coding upstream 54274 11865937 ~ 11866284 (-)
G224931 NA non-coding upstream 79429 11891092 ~ 11897894 (-)
G224873 NA other downstream 11804 11795890 ~ 11796309 (-)
G223969 LOC106605840 other downstream 529485 11275917 ~ 11278628 (-)
G223942 LOC106576860 other downstream 633746 11172120 ~ 11174367 (-)
G224954 LOC106576536 other upstream 203263 12014926 ~ 12016101 (-)
G224988 LOC106605856 other upstream 259624 12071287 ~ 12081233 (-)
G225099 NA other upstream 524578 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 642725 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 660636 12472299 ~ 12473060 (-)

Expression


Co-expression Network