XLOC_021593 (chia.6)


Basic Information

Item Value
gene id XLOC_021593
gene name chia.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17980875 ~ 17993663 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042862
GAACATTGTGATACAATTTTGAATTATAGTGTGTTTCTTTCTTTATGTACGTAGAACTTAGAACTAGACATATATTTGAACATCTTATCAAGGTGGTTGTGTTTTTAAACTGATGTTTTAGATTGAATTATTTGATTGAGTCACTGAGACAAGGGAGAAAACACTCCCACAATCACAATGCCAAAAAGAATGTTAGTGCAATGGTTGATTTCACAAACATCGGACAACATCCAGACCAGATGACAGCAAACAGCTATTTTGGGGAAATTCAGGTCTTGTGTGTTTTGGTTAATCATTGTATCACACAGGAGTGAGGTCAGTGTGTTGGGGGTAAAAGGAAGTAATATAAACAACAGTTCCTTCTATTCATACATCATTAGCACACTGATACTCTTGGCTGATACAACCATCGCTTGAAGATGAGCAGATTCATTTTTATAGCCGGTGAGTAATTGTTGATCTTACATAACATACTTTTTAATAAAGATGTTGATGGTTCATTTTTACATCTTTTCAGGCTTTTCACTGGCATTGTGTCACTTTGGATTGGCGTCCCAACTTGTATGTTACTTCACCAACTGGTCTCAGTACAGACCTGATGTTGGCAAGTACATGCCATCTAATGTGGATCCACATCTGTGTACTCATTTAATTTATGCCTTTTCcattattaataatgaaaataaactgACAACCTATGAATGGAATGATGAAACTCTCTACCAGTCCTTTAATGGCCTAAAACAAAGCAACCCCAACCTGAAAACTCTGTTGGCTGTCGGTGGATGGAACTTTGGCACAACTCAGTTTAGCAGCATGGTGTCCACGCCACAAAACAGACAGACCTTTATTCAGTCCAGTATCACATTTCTGAGGACTCATGGATTTGACGGTCTGGATTTGGACTGGGAGTATCCTGGTTCACGTGGAAGTCCTCCAGAAGACAAGCAGAGATTCACTTTGCTCTGTAAGGAGCTTGTAGAAGCTTATCAGGCAGAGAGTGCAGCTACTGGACGCCCCAGACTCATGCTCACTGCTGCAGTGGCTGCTGGGAAAGGAAACATTGACGCTGGTTATGAAATTGCAGAAATTGCCAAGTATTTGGATTTCATCAATATCATGACCTATGATTTCCACGGCTCATGGGAAAGTGTCACTGGACACAACAGTCCTCTGTATCGAGGCTCTGGAGACATAGGAGACAAAATCTACTACAATACTGACTTTGCAATGACCTACTGGCGAGATCAGGGCGCTCCTGTGGAGAAGCTGAGGATGGGCTTTGCTGCTTATGGAAGAACGTTTCGCCTGTCATCTGCAGTCAGTGGAGTTGGAGCTCCAGCTAGTGGTGCTGCTTCAGCTGGAACATACACCAGAGAAGCTGGATTCTGGTCCtattatgagATCTGTACTTTTCTAAAACAAGCCACTGTGCAACAGATAGTTGATCAGAAAGTTCCTTATGCAACAAAAGGACAGGAGTGGGTGGGATTTGATAACATGGAAAGTTATAAGACTAAGGTGGACTATTTGAAGGAGAAAGGCTTTGGAGGAGCTTTTGTCTGGGCTCTGGATCTTGATGACTTCAGTGGTCAGTTCTGTGGGCAGAGCAAATACCCTCTTATTGGACAACTTCGCACACTGCTTAATATCAACAACACTGAGTTCCCATATAACCCTCCAAGCACAACAGTTAAGCCCAGTGGGAGGCCCACAAGAGCATCTGCTACTGTACCTTATGCCACAAGACCTCCTGTTGTACCGACGGCGCCCTCAGGATCAGACTTCTGTACAGGCAAATTAGAGGGCATCTACGAATACCCAGCTGACAGCATGATCTACATTCATTGTGCCAATGGCAGGACCTTCATACAGAGATGTCCTGCAAAGACAGTCTTTGATCCCGACTGCAAATGCTGTAACTGGCCTAAATAA
>TCONS_00042863
GCTATTTTGGGGAAATTCAGGTCTTGTGTGTTTTGGTTAATCATTGTATCACACAGGAGTGAGGTCAGTGTGTTGGGGGTAAAAGGAAGTAATATAAACAACAGTTCCTTCTATTCATACATCATTAGCACACTGATACTCTTGGCTGATACAACCATCGCTTGAAGATGAGCAGATTCATTTTTATAGCCGGCTTTTCACTGGCATTGTGTCACTTTGGATTGGCGTCCCAACTTGTATGTTACTTCACCAACTGGTCTCAGTACAGACCTGATGTTGGCAAGTACATGCCATCTAATGTGGATCCACATCTGTGTACTCATTTAATTTATGCCTTTTCcattattaataatgaaaataaactgACAACCTATGAATGGAATGATGAAACTCTCTACCAGTCCTTTAATGGCCTAAAACAAAGCAACCCCAACCTGAAAACTCTGTTGGCTGTCGGTGGATGGAACTTTGGCACAACTCAGTTTAGCAGCATGGTGTCCACGCCACAAAACAGACAGACCTTTATTCAGTCCAGTATCACATTTCTGAGGACTCATGGATTTGACGGTCTGGATTTGGACTGGGAGTATCCTGGTTCACGTGGAAGTCCTCCAGAAGACAAGCAGAGATTCACTTTGCTCTGTAAGGAGCTTGTAGAAGCTTATCAGGCAGAGAGTGCAGCTACTGGACGCCCCAGACTCATGCTCACTGCTGCAGTGGCTGCTGGGAAAGGAAACATTGACGCTGGTTATGAAATTGCAGAAATTGCCAAGTATTTGGATTTCATCAATATCATGACCTATGATTTCCACGGCTCATGGGAAAGTGTCACTGGACACAACAGTCCTCTGTATCGAGGCTCTGGAGACATAGGAGACAAAATCTACTACAATACTGACTTTGCAATGACCTACTGGCGAGATCAGGGCGCTCCTGTGGAGAAGCTGAGGATGGGCTTTGCTGCTTATGGAAGAACGTTTCGCCTGTCATCTGCAGTCAGTGGAGTTGGAGCTCCAGCTAGTGGTGCTGCTTCAGCTGGAACATACACCAGAGAAGCTGGATTCTGGTCCtattatgagATCTGTACTTTTCTAAAACAAGCCACTGTGCAACAGATAGTTGATCAGAAAGTTCCTTATGCAACAAAAGGACAGGAGTGGGTGGGATTTGATAACATGGAAAGTTATAAGACTAAGGTGGACTATTTGAAGGAGAAAGGCTTTGGAGGAGCTTTTGTCTGGGCTCTGGATCTTGATGACTTCAGTGGTCAGTTCTGTGGGCAGAGCAAATACCCTCTTATTGGACAACTTCGCACACTGCTTAATATCAACAACACTGAGTTCCCATATAACCCTCCAAGCACAACAGTTAAGCCCAGTGGGAGGCCCACAAGAGCATCTGCTACTGTACCTTATGCCACAAGACCTCCTGTTGTACCGACGGCGCCCTCAGGATCAGACTTCTGTACAGGCAAATTAGAGGGCATCTACGAATACCCAGCTGACAGCATGATCTACATTCATTGTGCCAATGGCAGGACCTTCATACAGAGATGTCCTGCAAAGACAGTCTTTGATCCCGACTGCAAATGCTGTAACTGGCCTAAATAACCATGTTATAATTGTTACATGACAAAGTAAATGTTTTTAGTAGATTAGCAAAATTTGGGCCCATTAATGCCACaatttgatttctgtcatgttgaagttaatgttttaaaattagaCATAGAGAGCCAAACATATACCACTGCTTTCTTTTGAAAATGCTACATTTTGATGGTTGGAGAAgtataatttgcctaattaaaaCTAACCTGAAGCA
>TCONS_00042864
ATTAGCACACTGATACTCTTGGCTGATACAACCATCGCTTGAAGATGAGCAGATTCATTTTTATAGCCGGCTTTTCACTGGCATTGTGTCACTTTGGATTGGCGTCCCAACTTGTATGTTACTTCACCAACTGGTCTCAGTACAGACCTGATGTTGGCAAGTACATGCCATCTAATGTGGATCCACATCTGTGTACTCATTTAATTTATGCCTTTTCcattattaataatgaaaataaactgACAACCTATGAATGGAATGATGAAACTCTCTACCAGTCCTTTAATGGCCTAAAACAAAGCAACCCCAACCTGAAAACTCTGTTGGCTGTCGGTGGATGGAACTTTGGCACAACTCAGTTTAGCAGCATGGTGTCCACGCCACAAAACAGACAGACCTTTATTCAGTCCAGTATCACATTTCTGAGGACTCATGGATTTGACGGTCTGGATTTGGACTGGGAGTATCCTGGTTCACGTGGAAGTCCTCCAGAAGACAAGCAGAGATTCACTTTGCTCTGTAAGAGAGGAAACACTGAGGAGGAAGAATTGCTACAATAAAT

Function

symbol description
chia.6 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region.

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-1140 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region.

Ensembl:

ensembl_id ENSDARG00000093193

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042862 False 1935 mRNA 0.43 10 17980875 17993449
TCONS_00042863 False 1824 mRNA 0.43 11 17981127 17993663
TCONS_00042864 True 562 mRNA 0.42 6 17981250 17986199

Neighbor

gene id symbol gene type direction distance location
XLOC_021592 chia.6 coding upstream 32750 17939611 ~ 17948125 (+)
XLOC_021591 chia.4 coding upstream 47732 17926279 ~ 17933143 (+)
XLOC_021590 CU234171.1 coding upstream 73471 17899226 ~ 17907404 (+)
XLOC_021589 si:ch73-390p7.2 coding upstream 99547 17878969 ~ 17881328 (+)
XLOC_021587 naca coding upstream 104098 17865554 ~ 17876777 (+)
XLOC_021594 mfsd4ab coding downstream 109417 18103080 ~ 18114890 (+)
XLOC_021595 CR352232.1 coding downstream 136197 18129860 ~ 18132323 (+)
XLOC_021596 tafa4a coding downstream 140650 18134313 ~ 18145233 (+)
XLOC_021597 NA coding downstream 140803 18134466 ~ 18136294 (+)
XLOC_021598 CR339055.1 coding downstream 295411 18289074 ~ 18289201 (+)
XLOC_021588 CR381647.1 non-coding upstream 107277 17873526 ~ 17873598 (+)
XLOC_021584 dre-mir-124-5 non-coding upstream 197334 17783413 ~ 17783541 (+)
XLOC_021583 CR381647.3 non-coding upstream 197831 17782508 ~ 17783044 (+)
XLOC_021582 NA non-coding upstream 204530 17770424 ~ 17776345 (+)
XLOC_021581 CR407550.1 non-coding upstream 321773 17656836 ~ 17659102 (+)
XLOC_021600 NA non-coding downstream 694691 18688354 ~ 18691482 (+)
XLOC_021602 CR847953.2 non-coding downstream 737659 18731322 ~ 18731399 (+)

Expression


Co-expression Network