LOC110509712 (LOC106576526)


Basic Information

Item Value
gene id LOC110509712
gene name LOC106576526
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12056146 ~ 12068253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590774.2
TCCATCAGAGGGCATCACAAACGATGCACTACACAGAGGGGCATGCGCTTCTGTGTTTATCTTCTGCAGAAGTACAGGCTAATTTCGTATGGaggaaaataaacaataaaaatgtctaaaataGAGTTGTTGAGAGTTTCTCAACCATAAATTAACAGCGGCTGCTGAGGAGATATTTGGGGTCGTTGAAAAAACGATAGCAGAGTACCAGGTAGACGTTGTTCGTATGAAAGAGGACAACAAACGTCTTCTTGGGCTGTTGATGTTGCATAGAGGAGTGTCAGACTGCCATCGGCAGGCTGAAGCTACTATCACTTTGGTGCAGGTTGCCCCAGAGCAGCAGCAGTTATGTACTCAAGAGTGGGGCCTCCATCTAAGACAGGAGGACCCAGAGCCCACAGTGTCACTATGTAAAGAGGAAGACGATACCCACTGGATCAGTGAGGTTGAAGAGCACATTCAAAGGCTGGAGTCTGATCCCAAAGACCCAGACCAAGTATCCACTTCTGAAGATTTCACATTCCAAATGGAGACAAGGGTCAGTAAACGCAGCCAACAAACTGAAAGTTATCCTCAACGACAACAGAATAGAGAAAGCGATTCTGCCCTCTCAACCTGACTCACTGAATGAGCTGATATCAACGCTCAAGGAGAAACTGCATCTGAAGTTTGATTTCAGTCTTCTTTATGAAGACCCTGATGTAAACAATGAGCTCTTCAACTTAGAGACCATTGAAGACTTGCCTTCTCCTAGGGCTACGGGAAAGTTTTGCGAATACGACGTGATACAGACCTCGGTTTAACCGGACTCTCAGCCACCGAGTTACAGGCCGCCCCACCAGAGCGGCTAGGCAGGTGGCCTGAGGTATTTGTCATACCCACTTTCTCGATGGAAGTTGAGTTTGCTCTGAGAGAGCGCTATTGTGCATATCTGAGACATGAAACGGTGCTGAAAATAACAAGGGATAAAAAACACAACATTCTTGATAGGATGGCTTGGACAATCTTCAATTCCAAAGCGTACCCAAGTGACAGGCAGTTTGCCAAGGCAGCTGAGGCCCTTGTAACCAAGCACCCGTGTTTGAAAGAGCCTGGCTCAAAATCAGGCTGTGATGGCTGGAAGAACAGCCTGAAATTCAAAATGGGAAACTACAGGCAGAAGTTACGCCGTGTTGGGTTCCCAGAGGTTGCTGTGAACGGGGGGAGGAGGAGCAAGCATCGTCCTGACAATGAGCACGCTCGGAGCAACATTAAAGGAGCACGCCGGGCAGAGGTGAACTTCCTGCCCAACTTCCCTCAATGAGAAGATGAGGCCAGCCTGGAGAAACAGAGACTGGAGATGGTCCACGAGATGACGAAAGAAAACAGAGACCTGCCactcatcaatcaacacatgcAGAAGACATTTGCTCTCCGACGCCAAGAAATAGTTCAATCCAGTCCCACGGTAGAGCATCTCAGAACACGCTGGCCAGCACTCTTCCTCGAAGCCCAGGTACATGCTGAGTTTCAGAGAATCACCAACCAGAGCCTGCAGCAGACGTTCTACTCTGCCTTGGACCACCACACGCCCCGCCTGCTGACCCTgttcagggaggaggaggggaagtcCACCACCCATGGAGGGAAGTTCTCAAGCATCCTGAGAGTGTACAACGAGCAGTTCACTTCACAGGGAGAAAATAACATCACCGTGGCCCGTTCTGCAGTCCTGGCTGGTCTCCCTTTGTTGTTACGAAAggatagttctgatgtcttcaaaATCTGCGAGGTGGGAGAACTCAGCAACCCTGGTATTCTGGATGGAGTTTCCATTCTCTCAGTGGTGGGCCAGCACAATGAGGTGGTGGGTGGTATGCCCATCAGACCGGCCCATGTATCCATTGTCCTTGAGGATAAGATCGTCATGACTAACTCCCGCTCCTGGCCAGACGCTCTCGTGGTTGTTTTTGGGctactcttctccctccatctgaacTACCCCAAAGCCCTGGGCAGCACCTTTGAGTTCATGCAGAAAGTCTTCCTGAACCTCGACGATGGAAAACTGAAGCCCAAGCTGCTAGCGCTGAAAAATGAACTGTTGGCCTAATTCTGTAGTGATGAGATGGAATTTTACTTTGAGTGACCTCCTATATGCAGAGCGAGTGGTTTGAAAACAATGGTTATTTTTATTTACTTTACTTTTTATATTGTTGTACCTTTTTTGTGAAGGTAATGGATTTCATATTGTATTTCAATTCACTTATAACCCTTTAATGTGAAAAGAAGACACAGGTCAGTCAACACATTAACTTGCCACACACAGTCGATCTGCGACCCAGTTCTCTACCTTTGTTATACAGCTGCAGAAAACCCCCAAACGTTTTCTAGAAGGTTTCACCTTTGCAGACATTCCGACTGGCACATAATACATGTTCATAAGATGTTTATGAAAGTGTCTTTACCTGCTAttgtctctcttctctggcaGTGTTGTGTGATCCTGGCCTTCTATCTGAATTCTAAATGCTCACCAAGACACAGGACTATGTCTTAACTGTTGTAACACACTGAATATACGCTGAGTGTACATTATTgtgttgcacccccctttgcagcctcaatttgtcggggcatgggcTCTACAAGATGTCaaagcgtttcacagggatgctggcccatgttgactccaatgtgtcCCACAGTTGGCACGATGTCAATtaggtggtggactattcttgatacacacaggaaactgttgagcgggaaaaacccagcagtgttgcagtgcttgacacattcaaacttctttaacctgtctcctccccttcatctacgctgattgaagtggatttaacaagtgacaataaatagctttcacctggtcagtctgccatggaaagagcaggtgttactAATGATTTGTACACTCGCATCCTAtagtttaaaacatttttttttaattgcactgttggagccaaaaacacaagcattttgctgcacctttGATACCATATTCAAatctgtgtatgcgaccaataaacttcgatttgattttgatttgtagTAATGCAAACAGTGGAGAGCCAGGGCTGTGATGGCGGTCAGTAGGAGGGCACACCACATCACCAGAGATGCTGTAACTGGTCTCAATGTAGGAGAAGTAGAGCTCCATCTGCCACTGAGCCCTGGGAGGagaatacacacaatacactccATATAGCCTTCACAGAGCATACATACAGACTTAAAATAGCCTTCATAGACCATACATAAAGACTTCATATAGGATGTATGATGATGGAACACTATAGCCTTCACATAGCATAACGATGTAACACAGATAATACCCTTCATACAACCGTCAAAATCACATTGATCACAGTAAAGCAACTTTGGCATTATGTACATCAGTCCAGGGTTACAAGTAGAACATTTGAAAAGGTCCCAGAATGTTTGTTCTTAACACTCAATGGAGAGTGAGGCAGCAGGGGGGACACAGATTCTTGCCTTATTGCACAGCTCCATGTCAACTCGATGTGCACTGGTATCTGTGAGGCGGTTTCTCTGTCAAGACAGCTCACTGGTTTGTCTGTGTCGTTGGTCTGTCTGCCTGGCGCTGGTATATGTGTCTGTCGcgggtatgtgtgtctgtctgcctgtcgcTGGTCTGTGTGCCTGTCACTGGTATGT

Function

NR:

description
PREDICTED: uncharacterized protein LOC105029970

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590774.2 True 3675 mRNA 0.46 6 12056146 12068253

Neighbor

gene id symbol gene type direction distance location
LOC110509608 LOC105029961 coding downstream 78160 11966198 ~ 11977986 (-)
LOC110509399 LOC106576265 coding downstream 105572 11895643 ~ 11950574 (-)
LOC110509511 ptn6 coding downstream 161044 11862989 ~ 11895102 (-)
LOC110509614 ret1 coding downstream 193739 11858718 ~ 11862407 (-)
c1r c1r/c1s coding downstream 231045 11819613 ~ 11825101 (-)
LOC118945807 LOC106605860 coding upstream 1951 12070204 ~ 12072287 (-)
LOC110503589 LOC106576508 coding upstream 8831 12077084 ~ 12086948 (-)
LOC110509720 LOC106576492 coding upstream 18921 12087174 ~ 12089471 (-)
LOC110509756 LOC106605861 coding upstream 43130 12111383 ~ 12112865 (-)
trnav-uac NA coding upstream 61918 12130171 ~ 12130246 (-)
G224956 NA non-coding downstream 2377 12020965 ~ 12053769 (-)
G224959 NA non-coding downstream 6609 12045392 ~ 12049537 (-)
G224955 NA non-coding downstream 38676 12017257 ~ 12017470 (-)
G224978 LOC106595066 non-coding downstream 59699 11994218 ~ 11996447 (-)
G224969 NA non-coding downstream 70455 11985461 ~ 11985691 (-)
G225019 NA non-coding upstream 68198 12136451 ~ 12139918 (-)
G225032 NA non-coding upstream 95470 12163723 ~ 12169705 (-)
G225048 NA non-coding upstream 159305 12227558 ~ 12227877 (-)
G225061 NA non-coding upstream 198122 12266375 ~ 12308268 (-)
G225068 NA non-coding upstream 211278 12279531 ~ 12280566 (-)
G224954 LOC106576536 other downstream 40045 12014926 ~ 12016101 (-)
LOC110509592 LOC100136300 other downstream 246800 11808113 ~ 11811663 (-)
G224873 NA other downstream 259837 11795890 ~ 11796309 (-)
G224869 NA other downstream 302466 11752851 ~ 11753680 (-)
LOC110509576 LOC106576947 other downstream 314562 11727284 ~ 11741584 (-)
G224988 LOC106605856 other upstream 3034 12071287 ~ 12081233 (-)
G225099 NA other upstream 267988 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 386135 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 404046 12472299 ~ 12473060 (-)
G226124 NA other upstream 998620 13066873 ~ 13067357 (-)

Expression


Co-expression Network