LOC110509720 (LOC106576492)


Basic Information

Item Value
gene id LOC110509720
gene name LOC106576492
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12087174 ~ 12089471 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590786.2
TGCCGCTGTGCTCAAAGGAACGTCCTCCTTTGTTTAACGCATACGGTGTCTACGCTATGTTGTTGTAAATGTACCTGTGATTATCCGCTAGCAAGCTGACACAACTTTTCTCCtctaaaaatgtccaaaataGAGTTATTGAGAGTGTTTCTCAACCAGAGATTGACAATGGCAGCTGAGGAGATATTTGGCGTCGTTGAAGAAACGATAGCAGAGTACCAGGAAGAGAACAGCCGTCTGCGTAGCATGCTCGATGTAGTTATTAAACCAGATATACTATTACACAGAATAGACATCCAACAGCCCACTCACCCTGTATCTGAACAGGAGGTTCTCCCTGAGCAGCAACACTGTGAGCAGGAGTGGAGCCCCAGGCTGGGGCAGGAAGACCCACATTACATACAGATAAAAGAGGAACCGGAGGAACTAGAGTCATCTTTGAAAAATGACTCCAACCACCAGGACCTGACTCAGTCCTCACTTCTTTATGAAACCCAAAGTGAAGACTACGAAGAGATGTACTGTCTTCCCAGCACCTCAACTGCACAGAGGAACTACACTCTACACAGCACCTTAACTGCACAGAGGAACTACTCTCTACCCAGCACCTCCACTGAACAGAACATGATACAGATCAAACCAGAACTTAATGCGGAAGACAATGGAGTATCAGAACCATCCCGTGAGTCTCAGCCCCTCTTTGCAGAAGATACAGAGTCTTCTGCAGCTCAGAGTAAAAACATGAAATGTGTCAAAGGGGTAGAGAGTAGACCTCTGTCAGATTCAAAGCCACTGAAATCAAAGAGATCACAGACAGTAAGAAAACAAAGTGCCTATATCCACTGTAAATTTTGTGGAATGTATTTCTCTTACTTAGCTTCTTTAGTGAATCATGCAAGAAAGCATGCACAGGACAAAGAATGTCTATGTGGTGTGTGTGGAATACACTTAGAGTCCACAGAAAGTATGTTAGATCATCTAGAAACCCACGTTGGAGCTAGAGTTTGTCATGTTTGTGGTACATTTTTCCCTGGGAGTGCTGAGCTGAATGATCATATGAAGGTTCACCCAGGGGAGAAATCGTTTCGCTGTCCTGATTGTGGCAAGTGTTTCAGAAAAAATCCAGATCTCACAGCGCACAAGAGGATTCATACAGGGGAGAGACCGTACCGCTGCCAGTTTTGTGGCAAAGGATTCAGTCAGAGTGGAAACCTGGCTGTGCATATGAAGAGCCACTCTGGGGAGAAACCGCATTGCTGCCCTGTTTGTGGGAAATGTTTCAGCAGTAAATCTtatatgaacacacacatgaaGATTCACACAGGGGAGAGGCCATTTTGCTGTCGTTTATGCGGAAAATGTTTCATAAGAAACCCTGATCTGACAGTCCACATGAGGACTCATACAGGGGTGAAACCATATAAGTGCCAGTATTGTGGCCAAGGCTTCAAACAGAATTATCACCGGAAACTACACATGAAGATCCACATGGGAAAAACCATATCATTGCCATCTTTGTGACATGTATTTCAGCACTAGCACCCAGTCAACCTGGCATGAGATTTCACATGGAAGAGAAGACTTCACTGCAGTGACTGGCAGAGGCTTTGCATAGTATGGAAGTTTGGGAGGACATATAATGACAATGCATAGAATACTTTAGTGTAGAAAATACTGACTGTAGACCTTTTGTTTGTGATACATGTTTCACTCAGCCGCTTTATTGAGGAAAGTTTTTACATGCAGTGACTGTTAATATGTGGTTGTTTTACCTGTTTTGAATGTactgactgtaagttgctctgggcAAGAGTGTcaactaaatgaccaaaatgtaaatacaAGAAATTAAATTGACACAGAAGAGAAACTATTTCATTGttttataaaaaaaacatacataaGGCAATGATTGCTGCTAAATGCTTCAAATGGATGAACTCCCCTAGAAGATACGAGAAGAACATTCACAAGAGGGAGAAAACATAATGACAACCCGAAAGAAAAACTCATGACAACGTGACAGTCGTCCCGTGTAGGGAGAATCTTTCAGACAATACAAGAAGTGCATTAAAACATATCATTCCCTAAA

Function

NR:

description
zinc finger protein 260-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590786.2 True 2092 mRNA 0.43 2 12087174 12089471

Neighbor

gene id symbol gene type direction distance location
LOC110503589 LOC106576508 coding downstream 226 12077084 ~ 12086948 (-)
LOC118945807 LOC106605860 coding downstream 14887 12070204 ~ 12072287 (-)
LOC110509712 LOC106576526 coding downstream 18921 12056146 ~ 12068253 (-)
LOC110509608 LOC105029961 coding downstream 109188 11966198 ~ 11977986 (-)
LOC110509399 LOC106576265 coding downstream 136600 11895643 ~ 11950574 (-)
LOC110509756 LOC106605861 coding upstream 21912 12111383 ~ 12112865 (-)
trnav-uac NA coding upstream 40700 12130171 ~ 12130246 (-)
LOC110509802 LOC106576373 coding upstream 342698 12432169 ~ 12438782 (-)
LOC110503604 LOC106605712 coding upstream 581018 12670489 ~ 12673805 (-)
LOC110505096 tigit coding upstream 599008 12688479 ~ 12690874 (-)
G224956 NA non-coding downstream 33405 12020965 ~ 12053769 (-)
G224959 NA non-coding downstream 37637 12045392 ~ 12049537 (-)
G224955 NA non-coding downstream 69704 12017257 ~ 12017470 (-)
G224978 LOC106595066 non-coding downstream 90727 11994218 ~ 11996447 (-)
G224969 NA non-coding downstream 101483 11985461 ~ 11985691 (-)
G225019 NA non-coding upstream 46980 12136451 ~ 12139918 (-)
G225032 NA non-coding upstream 74252 12163723 ~ 12169705 (-)
G225048 NA non-coding upstream 138087 12227558 ~ 12227877 (-)
G225061 NA non-coding upstream 176904 12266375 ~ 12308268 (-)
G225068 NA non-coding upstream 190060 12279531 ~ 12280566 (-)
G224988 LOC106605856 other downstream 5941 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 71073 12014926 ~ 12016101 (-)
LOC110509592 LOC100136300 other downstream 277828 11808113 ~ 11811663 (-)
G224873 NA other downstream 290865 11795890 ~ 11796309 (-)
G224869 NA other downstream 333494 11752851 ~ 11753680 (-)
G225099 NA other upstream 246770 12336241 ~ 12340966 (-)
G225127 LOC106605865 other upstream 364917 12454388 ~ 12457791 (-)
G225171 LOC106605713 other upstream 382828 12472299 ~ 12473060 (-)
G226124 NA other upstream 977402 13066873 ~ 13067357 (-)
G226187 NA other upstream 1087707 13177178 ~ 13180272 (-)

Expression


Co-expression Network