LOC110509848 (LOC106575652)


Basic Information

Item Value
gene id LOC110509848
gene name LOC106575652
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12691632 ~ 12700659 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021590992.2
CACATTCATGAATGACGATGTTAGGAAAAGGTGTGTGTTTATCTGCCATGCAGATCATTATCCAGTTTACCGAATTCCTGTCCTTCATGTACAATAAACCATAAATATCTGTATCACAATAACATTTACAGGGCCATTACCTAAACGGATACAAAGGTCACTGCAATGTGGCTTACAGTAAATGGGGAACTTCCTTGTCACCTGGCTGGCAGCTCTAAAAGATAGCACCTCAGCCTATTCTATAGCATCATACTGTGAGTGTACTAGAAGCACTTTCTAAATCTGGAACAGAACAAAGTATTCCAACAACAATGGAAACTGCAGTagccatctctctcactctgttcatACTCACAGGTCTCTGTGCTGGTCAGGGTCTGTTTCCACAAGGTTCTGTGAATGGAGCAGAAGGAGGGACAGCGATGTTCATCACAAATCTAATCCCACCAGCCCAGCCGTTCATAAAAATATCCTGGACTGTTGGTGGAGCCAACATTATAACCTCTCCTGGTGATGACTCTATAGGGCCTGGATACGGAGACAGGATCACTCTGAACAAAACTACTGGATCTCTGGAGCTCAGGAATCTGACCCTGGCTGACAGTGGAGAATACAGAGTGTCTATAACAACAGCTACAGCAGAAACAATCAATGGATCAACTGAACTGGTTGTGTATGAGAATATATCTGATGCCAACATCACAGGACCATCAAACAATCTGTTTGCAGATGTGAGCTCCGCCAACTTAACCTGTGAGGCTGCTGGTAACATCACTACTATACAATGGACGAAGGAAGGTCAGCCTCTGTCTGCTGGTGGCAATATATTATTCTCAGAGGAAAACAGGAAAGTATCCATCAGTCCTGTGAAGAGACACGACAACGGTGAATATGTGTGTAAACTCACCAACCCTGCCAGCTCTGCTACTGCCTCCTATAGAATGATAGTGAACTATGGACCAGAGTCCATGACCATCCTGGGCCAAAACGTTGCTGAGGTGGAGTTATTCACCCTTATTTACTGCTCTGTTCAGTCTGTACCGCCTGCTACGTTCACCTGGTTGTTCAATGGGCAGCAGACAGGTGTACATGAAGCTGGATACATCATAAGGAGCGTCAGCTACAACAACAGTGGGGACTACAGATGTGATGCTAGGAATGATCTCACCGGAAATGTTATCAGTGTGGACCATAGTCTGTCAGTGAAAGATAAAACCCCTCCACCCCTAAGCCCAGAGGGAGCAGCAGGTATAGCAGTcgctgtgatgttggtagtgGTTGCTGTAGCTCTTGGTCTCTATTTCGGCATAACTCATCAACGGAACAATTCCACAAATACTACTGAGACAGGAATCAGCCATGCACCTGACACCAGCCATGGACCAGGGACCAGCCTTGCACCTGACACCAGCCATGGACCAGGGACCAGCCTTGCACCTGACACCAGCCATGGACCAGGAACCAGTCTTGCACCTGACACCAGCCATGGACCAGGAACCAGTCTTGCACCTGACACCAGCCATGGACCAGGAGCAAAAGGTGGTGTGTATGAGAATGTAGGACCTCCATTACCACCTCCAAGAGGCTCCAACATATATAACAGAAGTATAAAGTGCTGATTTCACCTCATCTTCCACAGTTGGCTATGGATTCACCCATCAGGTTTTACACCGTAATCAAATACATGCAGAGAGGACAAACATTCACTGGAGGACCAGCCAAGGAGACTAGAAACTAGACCCTACTGGACTCCACTACTGAGTAGACACTGGTCTTTGTACTGTACAGCTCAGCCATCCAGCTATGTATACTTGCTCAATGTAAATATGGACTAGGCAACTATAGAGGACAAATTATATCCCCTTAAATTGCACACACCAGTTGAAGTCTTACTAATTTGAATCTGCTTTCTCTGGTCAGTGTCATCCCTCAGACCACAACCTGTGCTACACTAAATGCCAATAGGGGCGTTTTCATAGAAACCTCCCCTACTGAACCACATTTTGCAACAGGTAACAGCAACTTTTTTTTCCACTGAAAGGAGGAAGATGAGAGGAAGTTTGAGTATACCTGTTATGCTTGCTGAATCCTCAAAAAACTAGTGAGGACTAGACTGCCTATGTGGCTCTGGCCAAAAGAAGTGCACCATATAGGATACCAAATATGAACTGAAATTCCAATAAA
>XM_021591002.2
CACATTCATGAATGACGATGTTAGGAAAAGGTGTGTGTTTATCTGCCATGCAGATCATTATCCAGTTTACCGAATTCCTGTCCTTCATGTACAATAAACCATAAATATCTGTATCACAATAACATTTACAGGGCCATTACCTAAACGGATACAAAGGTCACTGCAATGTGGCTTACAGTAAATGGGGAACTTCCTTGTCACCTGGCTGGCAGCTCTAAAAGATAGCACCTCAGCCTATTCTATAGCATCATACTGTGAGTGTACTAGAAGCACTTTCTAAATCTGGAACAGAACAAAGTATTCCAACAACAATGGAAACTGCAGTagccatctctctcactctgttcatACTCACAGGTCTCTGTGCTGGTCAGGGTCTGTTTCCACAAGGTTCTGTGAATGGAGCAGAAGGAGGGACAGCGATGTTCATCACAAATCTAATCCCACCAGCCCAGCCGTTCATAAAAATATCCTGGACTGTTGGTGGAGCCAACATTATAACCTCTCCTGGTGATGACTCTATAGGGCCTGGATACGGAGACAGGATCACTCTGAACAAAACTACTGGATCTCTGGAGCTCAGGAATCTGACCCTGGCTGACAGTGGAGAATACAGAGTGTCTATAACAACAGCTACAGCAGAAACAATCAATGGATCAACTGAACTGGTTGTGTATGAGAATATATCTGATGCCAACATCACAGGACCATCAAACAATCTGTTTGCAGATGTGAGCTCCGCCAACTTAACCTGTGAGGCTGCTGGTAACATCACTACTATACAATGGACGAAGGAAGGTCAGCCTCTGTCTGCTGGTGGCAATATATTATTCTCAGAGGAAAACAGGAAAGTATCCATCAGTCCTGTGAAGAGACACGACAACGGTGAATATGTGTGTAAACTCACCAACCCTGCCAGCTCTGCTACTGCCTCCTATAGAATGATAGTGAACTATGGACCAGAGTCCATGACCATCCTGGGCCAAAACGTTGCTGAGGTGGAGTTATTCACCCTTATTTACTGCTCTGTTCAGTCTGTACCGCCTGCTACGTTCACCTGGTTGTTCAATGGGCAGCAGACAGGTGTACATGAAGCTGGATACATCATAAGGAGCGTCAGCTACAACAACAGTGGGGACTACAGATGTGATGCTAGGAATGATCTCACCGGAAATGTTATCAGTGTGGACCATAGTCTGTCAGTGAAAGATAAAACCCCTCCACCCCTAAGCCCAGAGGGAGCAGCAGGTATAGCAGTcgctgtgatgttggtagtgGTTGCTGTAGCTCTTGGTCTCTATTTCGGCATAACTCATCAACGGAACAATTCCACAAATACTACTGAGACAGGAATCAGCCATGCACCTGACACCAGCCATGGACCAGGGACCAGCCTTGCACCTGACACCAGCCATGGACCAGGGACCAGCCTTGCACCTGACACCAGCCATGGACCAGGAACCAGTCTTGCACCTGACACCAGCCATGGACCAGGAACCAGTCTTGCACCTGACACCAGCCATGGACCAGGAGCAAAAGGTGGTGTGTATGAGAATGTAGGACCTCCATTACCACCTCCAAGAGGCTCCAACATATATAACAGAAGTATAAAGTGAGCAGCTGATTTCACCTCATCTTCCACAGTTGGCTATGGATTCACCCATCAGGTTTTACACCGTAATCAAATACATGCAGAGAGGACAAACATTCACTGGAGGACCAGCCAAGGAGACTAGAAACTAGACCCTACTGGACTCCACTACTGAGTAGACACTGGTCTTTGTACTGTACAGCTCAGCCATCCAGCTATGTATACTTGCTCAATGTAAATATGGACTAGGCAACTATAGAGGACAAATTATATCCCCTTAAATTGCACACACCAGTTGAAGTCTTACTAATTTGAATCTGCTTTCTCTGGTCAGTGTCATCCCTCAGACCACAACCTGTGCTACACTAAATGCCAATAGGGGCGTTTTCATAGAAACCTCCCCTACTGAACCACATTTTGCAACAGGTAACAGCAACTTTTTTTTCCACTGAAAGGAGGAAGATGAGAGGAAGTTTGAGTATACCTGTTATGCTTGCTGAATCCTCAAAAAACTAGTGAGGACTAGACTGCCTATGTGGCTCTGGCCAAAAGAAGTGCACCATATAGGATACCAAATATGAACTGAAATTCCAATAAA

Function

NR:

description
carcinoembryonic antigen-related cell adhesion molecule 6-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021590992.2 False 2184 mRNA 0.46 10 12691632 12700659
XM_021591002.2 True 2189 mRNA 0.46 10 12691632 12700659

Neighbor

gene id symbol gene type direction distance location
LOC110505096 tigit coding downstream 758 12688479 ~ 12690874 (-)
LOC110503604 LOC106605712 coding downstream 17827 12670489 ~ 12673805 (-)
LOC110509802 LOC106576373 coding downstream 252850 12432169 ~ 12438782 (-)
trnav-uac NA coding downstream 561386 12130171 ~ 12130246 (-)
LOC110509756 LOC106605861 coding downstream 578767 12111383 ~ 12112865 (-)
LOC110505108 LOC106578919 coding upstream 26405 12727064 ~ 12732403 (-)
LOC118944453 LOC106605569 coding upstream 35094 12735753 ~ 12745687 (-)
LOC118944488 NA coding upstream 52023 12752682 ~ 12753786 (-)
LOC110509853 NA coding upstream 53139 12753798 ~ 12758180 (-)
LOC110509869 NA coding upstream 60860 12761519 ~ 12763981 (-)
G225292 NA non-coding downstream 18042 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 22376 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 24062 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 25323 12666103 ~ 12666309 (-)
G225266 NA non-coding downstream 27053 12662483 ~ 12664579 (-)
G225345 LOC106578696 non-coding upstream 79264 12779923 ~ 12781221 (-)
G225369 LOC106578676 non-coding upstream 113340 12813999 ~ 12820135 (-)
G225368 NA non-coding upstream 113764 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding upstream 114278 12814937 ~ 12821075 (-)
G225370 NA non-coding upstream 140652 12841311 ~ 12843899 (-)
G225171 LOC106605713 other downstream 218572 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 233841 12454388 ~ 12457791 (-)
G225099 NA other downstream 350666 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 610399 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 675531 12014926 ~ 12016101 (-)
G226124 NA other upstream 366214 13066873 ~ 13067357 (-)
G226187 NA other upstream 476519 13177178 ~ 13180272 (-)
G226224 NA other upstream 523225 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 643415 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1226015 13909746 ~ 13927861 (-)

Expression


Co-expression Network