LOC110505108 (LOC106578919)


Basic Information

Item Value
gene id LOC110505108
gene name LOC106578919
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12727064 ~ 12732403 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021584088.2
CCTATTCTATAGCATCATACTGTGAGTGTACTAGAAGCACTTTCTAAATCTGGAACAGAACAAAGTATTCCAACAACAATGGAAACTGCAGTagccatctctctcactctgttcatACTCACAGGTCTCTGTGCTGGTCAGGGTCTGTTTCCACAAGGTTCTGTGAATGGAGCAGAAGGAGGGACAGCGATGTTCATCACAAATCTAATCCCACCAGCCCAGCCGTTCATAAAAATATCCTGGACTGTTGGTGGAGCCAACATTATAACCTCTCCTGGTGATGACTCTATAGGGCCTGGATACGGAGACAGGATCACTCTGAACAAAACTACTGGATCTCTGGAGCTCAGGAATCTGACCCTGGCTGACAGTGGAGAATACAGAGTGTCTATAACAACAGCTACAGCAGAAACAATCAATGGATCAACTGAACTGGTTGTGTATGAGAATATATCTGATGCCAACATCACAGGACCATCAAACAATCTGTTTGCAGATTGGAGCTCCGCCAACTTAACCTGTGAGGCTGCTGGTAACATCACTACTATACAATGGACGAAGGAAGGTCAGCCTCTGTCTGCTGGTGGCAATATATTATTCTCAGAGGAAAACAGGAAAGTATCCATCAGTCCTGTGAAGAGACACGACAACGGTGAATATGTGTGTAAACTCACCAACCCTGCCAGCTCTGCTACTGCCTCCTATAGAATGATAGTGAACTATGGACCAGAGTCCATGACCATCCTGGGCCGACATATCGCTGAGGTGGAGTCATTCACCCTTATTTACTGCTCTGTTCAGTCTGTACCGCCTGCTACGTTCACCTGGTTGTTCAATGGGCAGAAGACAGGTGTACATGAAGCTGGATACATCATAAGGAGCGTCAGCTACAACAACAGTGGGGACTACAGATGTGATGCTAGGAATGATCTCACTGAAAATGTTGTCTCTATGGGCCATAGTCTGTCAGTTAAAGATAAAACCCCTCCACCCCTAAGCCCAGAGGGAGCAGCAGGTATAGCAGTcgctgtgatgttggtagtgGTTGCTGTAGCTCTTGGTCTCTATTTCGGCATAACTCATCATCGGAACAAGAAAGGGAACAATGAAGAGAAAGATACAGACGCACTGAGCAGATCATCCCAGACAGAGGATATGTCCATGTCCAGCACTGACAAAGGACGTGAGGGGCACGAACTGACTACCCAAATCCAGGACAGAACCCATGATCGCAAGCAACCACAACCAGGCACCAGCCATACTATAGCCACCAGCCATTCACCAGGAACTAAAGCTTCTACAGGTGTACACGATTATGAGTGCATAGCAATTAAGAAAACTGGAGCTCCAACACCACCTTCAAGAGGAAAGCTTCCTGCCAGACAAACCAACACTGACACTGGCTCCACCATGTACTGTAAAAGTATAAATTGAGAGCAGCTGATCTCAACTACATATCTTCAGTTGGCTCTGGACTTCACCCATCAGGTTTTACACCTTAATCAAGTAAACATGGACACAACAAACGACTGGATGACCAGCCAAGAAGACTAGACACTACTGTACTCCACCTCTGATGAGACACTGGTCTTTGTCTAATTGCTCAATGTAATATAGACCAGGTAACAGTACACTGAGACACAAGGACAAATTGTATCCCCTTAAATTACACACACCAGTTGAAGTCCTACTCATTTGAATTGACTTTCCCTGGTCAAACTGCCATCCCTCAGACCATAATGACCTGTGTTACATTAAATGCCATCAGGGGAGTTTTCATAGAAACTTCCTACACTGAACCACATTACACATGTAACAGATGTAACATCGGGTTTTTTCCTCTGAAAGGAGGAAGTTTGAGTGCTCCTGCTATGCTtgctagtgcactatataggatgCAGAAGATTCACTGAAATTCcaataaaataatggaattaatgtTTTATTCGTCTCATGCACTGAACGATGCAACATGTATGGATTTTGTTAATGACTCTGGAATTGGGTGTAATACAAATAATCTTGACCCTCACACTTTATTTAGAATAATATTATACACCTATTATACACATCTCATGCATTGTGAGTGTTAAATGAGTAGAGTTGGAGTGGATGAAAATATCATAAACGAGTACATCAACAACTTTTTATTTATCATAGGTCTCTGATCACTATAGGGTCTTGTAAATATTTCTTATTTTGTCTCACAGGATTAACTGAATAATAAAGAAATTAAT

Function

NR:

description
carcinoembryonic antigen-related cell adhesion molecule 6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021584088.2 True 2237 mRNA 0.43 11 12727064 12732403

Neighbor

gene id symbol gene type direction distance location
LOC110509848 LOC106575652 coding downstream 26405 12691632 ~ 12700659 (-)
LOC110505096 tigit coding downstream 36190 12688479 ~ 12690874 (-)
LOC110503604 LOC106605712 coding downstream 53259 12670489 ~ 12673805 (-)
LOC110509802 LOC106576373 coding downstream 288282 12432169 ~ 12438782 (-)
trnav-uac NA coding downstream 596818 12130171 ~ 12130246 (-)
LOC118944453 LOC106605569 coding upstream 3350 12735753 ~ 12745687 (-)
LOC118944488 NA coding upstream 20279 12752682 ~ 12753786 (-)
LOC110509853 NA coding upstream 21395 12753798 ~ 12758180 (-)
LOC110509869 NA coding upstream 29116 12761519 ~ 12763981 (-)
LOC110509927 LOC106578751 coding upstream 124291 12856694 ~ 12860589 (-)
G225292 NA non-coding downstream 53474 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 57808 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 59494 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 60755 12666103 ~ 12666309 (-)
G225266 NA non-coding downstream 62485 12662483 ~ 12664579 (-)
G225345 LOC106578696 non-coding upstream 47520 12779923 ~ 12781221 (-)
G225369 LOC106578676 non-coding upstream 81596 12813999 ~ 12820135 (-)
G225368 NA non-coding upstream 82020 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding upstream 82534 12814937 ~ 12821075 (-)
G225370 NA non-coding upstream 108908 12841311 ~ 12843899 (-)
G225171 LOC106605713 other downstream 254004 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 269273 12454388 ~ 12457791 (-)
G225099 NA other downstream 386098 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 645831 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 710963 12014926 ~ 12016101 (-)
G226124 NA other upstream 334470 13066873 ~ 13067357 (-)
G226187 NA other upstream 444775 13177178 ~ 13180272 (-)
G226224 NA other upstream 491481 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 611671 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1194271 13909746 ~ 13927861 (-)

Expression


Co-expression Network