LOC118944488


Basic Information

Item Value
gene id LOC118944488
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12752682 ~ 12753786 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005039829.1
GTATGAGAACCCATCACCTGTGTATGAGAACCCATCACCTGTGTATGAGAACCCATCACCTGTGTATGAGAACCCATCACCTGTGTATGAGAACCCATCAGCTGTGCGTGACAACACACAACAAAATCAatctccacctctacccctgACAGACTTCAAGAGTACCTATGATACTAGGATAATGCAGTAAGAGGTCAGGAAGAGATCTCCATTCAACCACCATTCTCCAGTTCCACAATCAACACAAAGAAAACCTGATAACACCCAGTGTGGATCTGAAATGTAACGTACATAATACATTTGTGCTATGTTTGTCTGCTTTCTTGTGTAATTTTTTAACATTGAAAAGAAAACCTTGTTAATAATGAAAGTGGATAATgcattactgtactgtcattttATAAATTAGAGCATAATTAATGCCAGTTAAATAAATAACCATATTTAAATTATGTAAAAACAGAATGACTAATAAATATTGCCTGCTATTTTCCTACTACTCTGTTGTTCTTTGTGTCAGACCAGTGATTACCAGTTTATaagatatatactgaacaaaactataaaagcaacatgtaaactGATGGTACAATGTTTCAGAgcttaaataa

Function

NR:

description
carcinoembryonic antigen-related cell adhesion molecule 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005039829.1 True 611 mRNA 0.35 3 12752682 12753786

Neighbor

gene id symbol gene type direction distance location
LOC118944453 LOC106605569 coding downstream 6995 12735753 ~ 12745687 (-)
LOC110505108 LOC106578919 coding downstream 20279 12727064 ~ 12732403 (-)
LOC110509848 LOC106575652 coding downstream 52023 12691632 ~ 12700659 (-)
LOC110505096 tigit coding downstream 61808 12688479 ~ 12690874 (-)
LOC110503604 LOC106605712 coding downstream 78877 12670489 ~ 12673805 (-)
LOC110509853 NA coding upstream 12 12753798 ~ 12758180 (-)
LOC110509869 NA coding upstream 7733 12761519 ~ 12763981 (-)
LOC110509927 LOC106578751 coding upstream 102908 12856694 ~ 12860589 (-)
tlr21 LOC106605556 coding upstream 111156 12864942 ~ 12875688 (-)
LOC110503616 LOC106605556 coding upstream 127099 12880885 ~ 12883016 (-)
G225292 NA non-coding downstream 79092 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 83426 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 85112 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 86373 12666103 ~ 12666309 (-)
G225266 NA non-coding downstream 88103 12662483 ~ 12664579 (-)
G225345 LOC106578696 non-coding upstream 26137 12779923 ~ 12781221 (-)
G225369 LOC106578676 non-coding upstream 60213 12813999 ~ 12820135 (-)
G225368 NA non-coding upstream 60637 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding upstream 61151 12814937 ~ 12821075 (-)
G225370 NA non-coding upstream 87525 12841311 ~ 12843899 (-)
G225171 LOC106605713 other downstream 279622 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 294891 12454388 ~ 12457791 (-)
G225099 NA other downstream 411716 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 671449 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 736581 12014926 ~ 12016101 (-)
G226124 NA other upstream 313087 13066873 ~ 13067357 (-)
G226187 NA other upstream 423392 13177178 ~ 13180272 (-)
G226224 NA other upstream 470098 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 590288 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1172888 13909746 ~ 13927861 (-)

Expression


Co-expression Network