LOC110509853


Basic Information

Item Value
gene id LOC110509853
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12753798 ~ 12758180 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591025.2
TAACGTTTCTATGGTCACATTTTGGCTacaggctactttgaagcaaggtaaaacATGTGTCATAATAGGCTATGAAGTAAAACTGTTTTCACACGCGATTGTAAATGTAGAAATGTTGCACAATGACTGGGATTATAAGAACACATGATCAATGAGCTGCGAGCTCTCGCTTTGCTCAAACTAGGCTTTGTATGCGGTGCGCAGTAATGCAAGTTATAAATAAGTTAGATGACAAAATAACTTACTCATTTGCTTTTATTATGATGGGACATATCAGctattaattttttttaaagatttgcTAAGGACCTGTCATGCCAAATATTGTCCCCTTACCAAATAGTTTCCCCCTCTAATTCATTGATGGGATTCGATGAGTTCTAGCTTCTGTTGTTAGGGCTGTTGCTAGAACGTCAGGTTGGTTTTCACAGCTGTTTCGCAAGGTGTTCATTATTGTAAATTGTAAGGTAACCATTGATGGTATTTATttgttccacattattcattgttGTAGCCTAGGacctacaatatatacatatatattgaaCCACAAGGGTGTACTAATGTGCTATGCcagaaaaaaaatcataatagAGGACTACTGAAATGATCTTATTTCAGTGTAGATGAGGGAAGGAAGGGCAGGTTTAAATAAAAACATGACAGCCAGACAAGCCAGTGTAAGAATTAAATGGATTTCCATATGAATGGAGCGGAAATTAGCTGTCTTTGTGATTTGTAAGAACCAGTATCTGGTGCTACTATCACAATTACCCCAAACCCACCAATCATCGAGGGGGGGCTCTGTCACTTTAACCTGTGATGCAGCTGGCTTCAACATCACCAGAGAGTGGATGAAGGATGGTCATCCTGTGTCTTCTGTTGACGATATCATATTATCTGAGGATAAGAGAGTGCTGTCCATAAAGAAGAGAACAGACAGTGGCGAATACCTGTGTAGAGTCAGCAACCATGTCAGCTCTGAAAATGCCAGTGACACTGTGAATGTAATCTATGGACCTGATGGTATGGAAATCAAGGGTCCAAATGAAATAGAAGTAGGACAGAAGTTTACATTGACCTGCTCTGCCTACTCCAACCCACCTACTAGTTACACCTGGATGCACAATGAGACAGAGATACCTGGACATTCCCCTGAGTTCACTAAAGAGAAGAGTGAATACTCTGACAGTGGGGAATACACCTGTACAGCAACAAATGATGTCACTGGAAACAAAACATCTGTGGTCCATAAACTGTCAGTAAAAGGCTCGCAACAACATGTATATGAGAACCCATCACCTGTGTATGAGAACCCATCACCTGTGTATGAGAACCCATCACCTGTGTATGAGAACCCATCACCTGTGTATGAGAACCCATCAGCTGTGTATGAGAACCCATCACCTGTGTATGAGAACCCATCACCTGTGTATGAGAAC

Function

NR:

description
carcinoembryonic antigen-related cell adhesion molecule 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591025.2 True 1442 mRNA 0.41 4 12753798 12758180

Neighbor

gene id symbol gene type direction distance location
LOC118944488 NA coding downstream 12 12752682 ~ 12753786 (-)
LOC118944453 LOC106605569 coding downstream 8111 12735753 ~ 12745687 (-)
LOC110505108 LOC106578919 coding downstream 21395 12727064 ~ 12732403 (-)
LOC110509848 LOC106575652 coding downstream 53139 12691632 ~ 12700659 (-)
LOC110505096 tigit coding downstream 62924 12688479 ~ 12690874 (-)
LOC110509869 NA coding upstream 3339 12761519 ~ 12763981 (-)
LOC110509927 LOC106578751 coding upstream 98514 12856694 ~ 12860589 (-)
tlr21 LOC106605556 coding upstream 106762 12864942 ~ 12875688 (-)
LOC110503616 LOC106605556 coding upstream 122705 12880885 ~ 12883016 (-)
cxcr3.1 cxcr3b coding upstream 167274 12925454 ~ 12929064 (-)
G225292 NA non-coding downstream 80208 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 84542 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 86228 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 87489 12666103 ~ 12666309 (-)
G225266 NA non-coding downstream 89219 12662483 ~ 12664579 (-)
G225345 LOC106578696 non-coding upstream 21743 12779923 ~ 12781221 (-)
G225369 LOC106578676 non-coding upstream 55819 12813999 ~ 12820135 (-)
G225368 NA non-coding upstream 56243 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding upstream 56757 12814937 ~ 12821075 (-)
G225370 NA non-coding upstream 83131 12841311 ~ 12843899 (-)
G225171 LOC106605713 other downstream 280738 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 296007 12454388 ~ 12457791 (-)
G225099 NA other downstream 412832 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 672565 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 737697 12014926 ~ 12016101 (-)
G226124 NA other upstream 308693 13066873 ~ 13067357 (-)
G226187 NA other upstream 418998 13177178 ~ 13180272 (-)
G226224 NA other upstream 465704 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 585894 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1168494 13909746 ~ 13927861 (-)

Expression


Co-expression Network