LOC110509869


Basic Information

Item Value
gene id LOC110509869
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12761519 ~ 12763981 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002471505.2
TGATGACAACAGCACTCTCACCATAGTCAGAGTGACCCGGTATGACCAGGGGCAATTTAGCTGTAATGTGTTCAACCCAGGCCCCCAGTGTCTGATCTGGAGCGCAAAGTCACGAGCTCTGCAGGTCAGCTACTGCGTAGCATCCTAGCAATGACAAAAGCCATGGTCTTCCCAAGAAAGACTATGTAAATCAAGATTGCCTTTATTATTATGAAATTCGATCCCCGCGCTGAATTATTTTAAAGTTCAAATCAAGATATTTAATTAATTTGTGATCTATTCTGATGACTACATTTGTCAtcacacaggaccacgtgctGACACAGACCAATCACTGACACAGACCAATCACGGGCTGGCAGACTACGAGGCTACAATTATCATTGTATCAGGAaccaagGTACAGAAGTAGTCTGAATCACAGACATTTGTTACATCAGAAGAGATGGTGGCATCTGTAGTCGTCTTTCTTACCATGGCAACACTCTCAGGATATTGTGCTGGTCTAGAAGTGCTTCCTCCTGGACCTGTGAATGGAACATTGGGAGGAAATGTGTTTTTCAAAACCACCATCAATCCAACGACACTTAGTGCAATCGTCTGGACTTTTGGTGATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002471505.2 True 617 mRNA 0.44 3 12761519 12763981
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110509853 NA coding downstream 3339 12753798 ~ 12758180 (-)
LOC118944488 NA coding downstream 7733 12752682 ~ 12753786 (-)
LOC118944453 LOC106605569 coding downstream 15832 12735753 ~ 12745687 (-)
LOC110505108 LOC106578919 coding downstream 29116 12727064 ~ 12732403 (-)
LOC110509848 LOC106575652 coding downstream 60860 12691632 ~ 12700659 (-)
LOC110509927 LOC106578751 coding upstream 92713 12856694 ~ 12860589 (-)
tlr21 LOC106605556 coding upstream 100961 12864942 ~ 12875688 (-)
LOC110503616 LOC106605556 coding upstream 116904 12880885 ~ 12883016 (-)
cxcr3.1 cxcr3b coding upstream 161473 12925454 ~ 12929064 (-)
LOC110510146 mrpl17 coding upstream 575212 13339193 ~ 13341845 (-)
G225292 NA non-coding downstream 87929 12673056 ~ 12673590 (-)
G225290 NA non-coding downstream 92263 12669047 ~ 12669256 (-)
G225287 NA non-coding downstream 93949 12667362 ~ 12667570 (-)
G225284 NA non-coding downstream 95210 12666103 ~ 12666309 (-)
G225266 NA non-coding downstream 96940 12662483 ~ 12664579 (-)
G225345 LOC106578696 non-coding upstream 15942 12779923 ~ 12781221 (-)
G225369 LOC106578676 non-coding upstream 50018 12813999 ~ 12820135 (-)
G225368 NA non-coding upstream 50442 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding upstream 50956 12814937 ~ 12821075 (-)
G225370 NA non-coding upstream 77330 12841311 ~ 12843899 (-)
G225171 LOC106605713 other downstream 288459 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 303728 12454388 ~ 12457791 (-)
G225099 NA other downstream 420553 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 680286 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 745418 12014926 ~ 12016101 (-)
G226124 NA other upstream 302892 13066873 ~ 13067357 (-)
G226187 NA other upstream 413197 13177178 ~ 13180272 (-)
G226224 NA other upstream 459903 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 580093 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1162693 13909746 ~ 13927861 (-)

Expression

LOC110509869 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110509869 Expression in each Bioproject

Bar chart with 10 bars.
LOC110509869 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 250.
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Co-expression Network