XLOC_021596 (tafa4a)


Basic Information

Item Value
gene id XLOC_021596
gene name tafa4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18134313 ~ 18145233 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042867
CTAACCCACATTTTACTTGAAGTACTTATTTTCCGTTGGTGTTATCAATTAACATTAATATGTGAAAATATTACAGCCTGTACAGAAACTGTCATGGGTCGACCTGAAGTGAAGCCGGGCACCTGTGAGGTAGTGGAGGCTCATCGCTGTTGCAATAAGAATAAGATAGAAGAGAGGTCTCAGACGGTCAAGTGCTCCTGTCTGCCTGGACAGGTTGCTGGGACCACCCGCACAAAGCCTTCATGTGTCGATGCATCTATGGTGCGGATGAAGTGGTGGTGTCATATGAAGCCATGTTTGGATGATGAAGACTGTAAAGTATTGCCTGACCTCACCGGCTGGTCCTGCAGCTCTGGGAACAAAATCAAAACTACCAAGGTGAGCAGTAAGGCCTGGCCCATGGAGACAATTCACTGCTAG
>TCONS_00042868
GTGAAGCCGGGCACCTGTGAGGTAGTGGAGGCTCATCGCTGTTGCAATAAGAATAAGATAGAAGAGAGGTCTCAGACGGTCAAGTGCTCCTGTCTGCCTGGACAGGTTGCTGGGACCACCCGCACAAAGCCTTCATGTGTCGATGCATCTATGGTGCGGATGAAGTGGTGGTGTCATATGAAGCCATGTTTGGATGATGAAGACTGTAAAGTATTGCCTGACCTCACCGGCTGGTCCTGCAGCTCTGGGAACAAAATCAAAACTACCAAGGT

Function

symbol description
tafa4a Predicted to enable receptor ligand activity. Predicted to be active in extracellular space.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000077626

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042867 False 420 mRNA 0.47 3 18134313 18145233
TCONS_00042868 True 272 mRNA 0.51 2 18138589 18145193

Neighbor

gene id symbol gene type direction distance location
XLOC_021595 CR352232.1 coding upstream 1990 18129860 ~ 18132323 (+)
XLOC_021594 mfsd4ab coding upstream 19423 18103080 ~ 18114890 (+)
XLOC_021593 chia.6 coding upstream 140650 17980875 ~ 17993663 (+)
XLOC_021592 chia.6 coding upstream 186188 17939611 ~ 17948125 (+)
XLOC_021591 chia.4 coding upstream 201170 17926279 ~ 17933143 (+)
XLOC_021598 CR339055.1 coding downstream 143841 18289074 ~ 18289201 (+)
XLOC_021599 avpr2ab coding downstream 381795 18527028 ~ 18543359 (+)
XLOC_021600 NA coding downstream 543121 18688354 ~ 18691482 (+)
XLOC_021601 myh7bb coding downstream 577482 18722715 ~ 18757078 (+)
XLOC_021602 CR847953.2 coding downstream 586089 18731322 ~ 18731399 (+)
XLOC_021588 CR381647.1 non-coding upstream 260715 17873526 ~ 17873598 (+)
XLOC_021584 dre-mir-124-5 non-coding upstream 350772 17783413 ~ 17783541 (+)
XLOC_021583 CR381647.3 non-coding upstream 351269 17782508 ~ 17783044 (+)
XLOC_021582 NA non-coding upstream 357968 17770424 ~ 17776345 (+)
XLOC_021604 NA non-coding downstream 779237 18924470 ~ 18929002 (+)
XLOC_021606 CR788311.1 non-coding downstream 906252 19051485 ~ 19066987 (+)

Expression


Co-expression Network