LOC110503616 (LOC106605556)


Basic Information

Item Value
gene id LOC110503616
gene name LOC106605556
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 12880885 ~ 12883016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503616
ATGGCTGggctaaaaaataaaacattggtATCAGTAGCAATTGTCCTTCACATTTCCCAGTTCACCATTGGCTATAGCTTCAGGAATTGCACTGAGGATCCAACCTCAAACCACACAAAATTCATTTTCATCCGTCACCAGGCAAAGAACATTTCTGACATTGTAGGTGACCTGCCACCCTATGCCACCACAATTATAATCTCCATAAACCTGATAAAACACATACCAAACAATACCTTTGTTCACCTTCCTAACCTCAGGACACTTCAGATTGACAATATCCACCTGGAGACCATAGACAACCACGCATTCCAAAATATGAGCCAACTGAAGAGCCTAAACCTGTCAAATCTCAGCTCCTCTGTGTTTCAAGACCTCAAAAACCTTGTCAACCTGTCACTAAATAATAACTCAGTGATTAGGCTCCCTCCAGGTATTTTCTCCTCACTCTCTAATCTGGATGTCCTCACATTACGGCAGAACTACCTGAACAACTTCTCTGCGGTGGCAGAATCTGTGACTCACTTATCGAAGCTGAAAACTAGACCTGTGCAATAACTATCTAACGTCCCTCCATCATTCTAACCATACAGACCTACCAGAGTCCCTCACCACCCTCTATCTCTGTAAAAACAAACTGGTCACTTTAGCATGTGAGTGGGGATTCCTCAGCCATGTACTACTGCTGGATCTCTCCTACAATGACCAGCTCCCTTCAAGGGCTTTCCAAGGTCTGGACTTGCGGAAGCTAAACTACATGCGTTTGCATTCAACCAATGTTACAGTGCCAGAACTTTTGAATGTCAGCAATGTTAGAGGTGGAAACATAGACTTCTCTGGTATGGGGTTGAAGACTGACAATCTGCTCATGGAGTTATGCAGCCTTTTGAGTACAAAGGTCAAATTTGTTAAAAAGCTGAGTCTGGGAAGCAATGGGATTCTGTCATTGCGGAAGAACACACTTCCCAACTGTCCACCAATCCAAGGTTTATTGGACCTTTTCTTCAACCATTTTAGGAAGGTAAGATGCCTCCAGGATCAAATCAAGAAATCCACAGCAGAGAAAAACCACCTCACCTCCCTAATGTCCTGCAACAGACAGAACCTCTCTTTCCCAAATCTGACAGATCCGAGCTACCGTTACAATCGCATTCTCAATGTCAACTCTTTTGCTTTCCACCACACACCAAATGTGAAGACCCTACAACTAGCAGCTTTTGACAATCTGACCAACTTGACTTTCCTCTCCTTGGACAACTCCTGTGCCGGGGTGATAGAGCTGCAGCCGGGTGTCTTCAAAAACCTGCGGAAATTGAGCAAGCTCAGTGCAAGGAACATGGGCATCCAGTCCTTCTCAAAGGAGGTTTTCGGGAATCTGACAGAGCTGCAGATCTTGCTTCTCAACCAAAACGTAATGCAATCCTTAGATGTGAATGTGCTGGAGGCTCTACCTAAACTGCGCTACCTGGACCTGCGCAACATTCCTCTTAGTTACACCTGCCTCAACAGTGACCTGCAGAACTGGACTTTGAGTTAGTCTTACTCTAATGTCTACAGTGCCCAGAAAAAAACTCCAACAAAACATACACAACTTCAACACCAATGTTTTCTACCTGGACCTGGGAGAGTACCTTTTTGCCACCACAACCACTGTGACTTTAATGCTGACTATAATCCCGCTTAGTAGACCAGCTACTTCCCAACCTGTAGGGCAACGGAGCCTCTTCCCGGCTGTGCCTGCACCACTGTGACTTTGAGCTGGGCCGCAAACATCATGGACAACATCTTTTCCTCCGTGTACAGCAGCCGCAAGACCATCTGAGTGGTTAGTAAGCACTTCCTGTGCAGCGAGTGGTGCTCCCTGGAGATCCAGCCGGCCAGCTATAGGCTCTTCCACAAGCTCCAGGACCTGCTCCTGCTCTTCTTCCTAGAGCTCATCCCTGAAAGGCAGCTGTATGAGAAAGGTAATGTTGAAGAAGACCTACTTGCAGTGGCTGGGGTCAGACTGCACGGACCCAGTCAAGGCCCAGGATCTGTTTTGGAACCATCTGAGGAGGGTGCTGAGGAGCGGGAGCAGCAGGTTTGAagatagaggggagggaagaaTACTTAATTCAGCCACCGACCGATGA

Function

NR:

description
toll-like receptor 13

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503616 True 2132 mRNA 0.47 1 12880885 12883016

Neighbor

gene id symbol gene type direction distance location
tlr21 LOC106605556 coding downstream 5197 12864942 ~ 12875688 (-)
LOC110509927 LOC106578751 coding downstream 20296 12856694 ~ 12860589 (-)
LOC110509869 NA coding downstream 116904 12761519 ~ 12763981 (-)
LOC110509853 NA coding downstream 122705 12753798 ~ 12758180 (-)
LOC118944488 NA coding downstream 127099 12752682 ~ 12753786 (-)
cxcr3.1 cxcr3b coding upstream 42438 12925454 ~ 12929064 (-)
LOC110510146 mrpl17 coding upstream 456177 13339193 ~ 13341845 (-)
LOC110510138 trp-ii coding upstream 463093 13346109 ~ 13347872 (-)
LOC110503661 trp-i coding upstream 476866 13359882 ~ 13360962 (-)
LOC110510120 LOC106577461 coding upstream 493839 13376855 ~ 13378759 (-)
G225391 NA non-coding downstream 33190 12847436 ~ 12847695 (-)
G225370 NA non-coding downstream 36986 12841311 ~ 12843899 (-)
G225368 NA non-coding downstream 57756 12814423 ~ 12823129 (-)
G225371 LOC106578676 non-coding downstream 59810 12814937 ~ 12821075 (-)
G225369 LOC106578676 non-coding downstream 60750 12813999 ~ 12820135 (-)
G226019 NA non-coding upstream 28454 12911470 ~ 12912132 (-)
G226055 NA non-coding upstream 74427 12957443 ~ 12957679 (-)
G226067 NA non-coding upstream 88085 12971101 ~ 12971823 (-)
G226065 LOC106605724 non-coding upstream 89542 12972558 ~ 12985792 (-)
G226106 LOC106578882 non-coding upstream 151557 13034573 ~ 13036569 (-)
G225171 LOC106605713 other downstream 407825 12472299 ~ 12473060 (-)
G225127 LOC106605865 other downstream 423094 12454388 ~ 12457791 (-)
G225099 NA other downstream 539919 12336241 ~ 12340966 (-)
G224988 LOC106605856 other downstream 799652 12071287 ~ 12081233 (-)
G224954 LOC106576536 other downstream 864784 12014926 ~ 12016101 (-)
G226124 NA other upstream 183857 13066873 ~ 13067357 (-)
G226187 NA other upstream 294162 13177178 ~ 13180272 (-)
G226224 NA other upstream 340868 13223884 ~ 13224515 (-)
G226294 LOC100136012 other upstream 461058 13344074 ~ 13344375 (-)
wu:fe05a04 LOC106578221 other upstream 1043658 13909746 ~ 13927861 (-)

Expression


Co-expression Network