LOC110510031 (LOC106578847)


Basic Information

Item Value
gene id LOC110510031
gene name LOC106578847
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13051839 ~ 13063372 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591312.2
AACAGGCAGTACTAAGTCGTTTTTCTCCTTGCTGCCGCAATGCCACGTGCAACCACTTATATCCGTACATTTGTAACAACCTAAACATTACGAAACTTATATTTGATTAAAAAAAGCCTCACGGAATTCGACACTCATAGACCTCCATACAACAAAACATTTATCTCGCGGATAGATTTTAATGAGAGTAAagcctctcgcttcgcctcttcctctgtAAGGAAACGCATAATTCTTCCGGAGTAGCGAAACTTTATTTTCTATTCAATGCAAATGAAGAGGAAGGTGTAGACAATAACCAATCGACAAGATTAAGATCAAACCTGGGAAAAAGTAACGCAATAAAACCAAGATGACTAGAAGTCATCGTGACCACATCAAAACGGATTGTGAAACACAGTCAGATGATGTTGACTCCAGTAGAGAAGATTCAGACATTGGCCAAGCCCACTCTCTCAGCAGTAATGGGTTTACTTTCAACATCATCCAAATCAAAGAGGAGGAAACAGACTTTGACGTGCATGAAACAAGTGAGGAACATAACGGAATCAGATCAAATTGCCACTTGGATTCTAGAGCACTCCACCAGGATTCTTTAACCATCAAAACCAAGACTGAAACAGATTCTGTTTACATTAGCCAGGGGACGACAGAAATTAAGACTGAGCATGATTCTGAAATCAGAGTGGTTAAGACAGAAACTACAGTGTACGCCCCCTCACATAGCTGCCCCCACTGCAGTTGCATGTTCCACACACCACAGCAGCTACTTGTCCACACCTGCCAGGTTGCGAATTCTGACAACATTGTCGATTTTTTGTTGAAGACCCCGTTTCATTCTTTGGAGTCCACGGAAAAGGTGCGAATTAAAACAGAGGGTCGACCTCTGCCTGAAATCAAGTACATAAGGAAGGATGACAAAGTGAGGAGGGCGTTCAATACCAACTGGTATAAAAAGTATCAATGGCTAACAGGTAGTCTTTCATCAAGCCGCTTGTATTGCTGGCCTTGTCTGCTCTTTGGAACGTTTGAGCCTTGGGCTAAAGGGGGGTTCAGTGACCTGAAGAACATTGACCGTTCAGCTAAACGGCATGACGAAAGCCGGGAGCATCTCAACTCCTACGCGAAACTCAAGCTTTTGGGACAGCCGAGTCATTGTGCCAATCACTCACTCAATGAAGGCCTGCGTATTCAAGCTGCGCAACACAACGAAAAGGTCAGAAGAAACAGGGATGTTCTCAAACGCCTCATTGATAGCATTGCATTCTTAGGCATGCAAGAGTTGGCTTTTAGGGGGCACGATGAGACGGAAAGTTCCGCTAACAAAGGCAACTTCAGGGAATTGGCAGAGGTAATCGCGCGGTATGATGCTTTACTTGCTCAGCATATGGAATCTTCAACTGTGTTCACTGGAATGTCAAGAACTATTCAGAATGACTTGATAACTGCTATCGCATCATCAATTAGAAGTGAGATTAAAAGCGAGGTTGACGCTGCTCCATTTTTCTCCTGGCAAATGGATGAAACTACAGACCATTCGCAGTTGTCTGTCATTgtcaggtatgtggatgatcGGGGGTGTGTCCAGGAGCGTTTCTTGGGCTACTTTGATGTGTCAGCTGGGCGAGATGCACAGTCTGTGTTTGATCTAGTGAATTCGGAGATGTCAGAGTTTAACTTTGTGGAGAAACTAGTCGCTCAAACATATGATGGCGCTGCTGTAATGGCTTCTGATTTAAATGGTCTGCAAGCAAAAGTAAGAGCTGTAGCTCCGAGCGCCACCTTTGTGCATTGCTATGCACATCCCCTCAACTCCGTATTAAGCCAGAGCGTGAAGTCTATGCCCAAAACCAAGGTTTTCTTTGCCACACTGGGTGGCTTCGCAACTTTTTTTTGTAAGTCCACCAATAGAGTGCTGCTAGAAAAGGCCACTTGTGCAAGTTTGCCAAAAAACGCACCAACACATTGGAATTTCACGTCCAGAGTCGTTAACACAGTGGCAAAAAACTTTGAGCATCTGTTGGACACATTCACAGATATCACAGAGCATCCTAACATGGATGATGACACGATTTTTGATGCAAATGGGTTCAAGACACAGCTGGAagattttcattttatttttttacttctcACTTTTGAATATATATTTGCTTGCACAGATGTGGTTTTTGACAGTGTGCAACAGAATGCCATGGATGTAGAATTTTGTAAGAGGAGGATTGAGAATCTTTTACTCAAGATAGAGGAGCACAAATCTGAAGAAGAATTTAGTGCTATATATCAGAAGGCTTCGAACATGACAGATGATCCAGAGTTGATGCACAGAAGGAAGCGGAGGCAGGGCACTCAGGATGTACTGCAGACGTACAAATCACTGTACGATTCAATCCATGACAACATCAAGACACAAATAGCACAGAGGTTCCAAAGCCTGGACAGCAGGAGATACATGGAGTTGTTAGATGATGAGAAATTTGAGTCATTCCGGAGTGAATTCCCTGCAAATGCAATGGAAAGCCTGTCCCAGAGCTATGGGTGTTTTTTCAACATGGAAAAACTGAAAAATGAACTGCAAGTGTTCTACTGTGGTGAGGAGCTTCAAGGGAACAGTCGTAAACTGTGTGACAGAATCTTGCATTTCAAGGGATGTGGATTGAATGAAGTGATGCCTGAGGTGTACCGGCTCATGTGCCTAGTTGCAACTATAGGGGCAACGTCAGCGGGCGTGGAGAGCAGATTCTCTCGTCTGAAGAGGCTGAAAAGCTACACAAAGAACACCATGGGACAAGAGCGACTCAGGAACCTGGCAATCCTATCCATAGAAAGGAGAATTCTTAAATCATTGCAGAAGAATCCTCACTGGTATGAGAGGGTCATTGACCAGTTTGCCAATCAGACTATGAGAAGAATGGACTTTATATTCAAGTGATTGAGACCGGATGGTGGAAACTCCCTGAACTACTGAGAGGGAGTAAAAAGTCCCATGATGCCAGTAATGTATTAAAAGCAGCGTGTAGCTCCTGTTTGTAAGCATGTGCACATGTCCACATTCCTCCACTCTTCCTCTGGAGACCTCAACCCTTCTCATGCACTGCAGTCAGCGTTGACTAAAGCTGTCAGTGTCATCGAAAGATGTCAAACAAACTgaccgctgctgctgctactaaagAACATTCAAACTTAAACTATTTTGCTGAATGCCTGTTTTCCTTTTTCTAGTTTATATGCCTTTTGGACCCTGCACCCAAATACTTATTTGAACTGTTGAGTTGAGCATGCCAATTCTTGTTTTCGTGTTGTATTTTGtagttattatggatccccattagctactcttcctggagtccagcaaaattaaggcagttataacATTTTTGTAGTTGATTAACAAGGGAAAAGTGATTCACAGATGGTTGTATATGCCTGACTTACTGCCAGGGGATGACAAAAGTGACAATGATTGCTGTGAATAAAGTATGTGAAAGAGGA

Function

NR:

description
zinc finger MYM-type protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591312.2 True 3492 mRNA 0.43 3 13051839 13063372

Neighbor

gene id symbol gene type direction distance location
LOC110509994 LOC106595974 coding upstream 10158 13032077 ~ 13041681 (+)
LOC110503622 LOC106592383 coding upstream 25205 13025325 ~ 13026634 (+)
LOC110509979 LOC106574911 coding upstream 29807 12985236 ~ 13022032 (+)
LOC110509972 LOC106596703 coding upstream 74016 12972069 ~ 12977823 (+)
LOC110509966 NA coding upstream 127791 12921414 ~ 12924048 (+)
LOC118945979 LOC106577047 coding downstream 58471 13121843 ~ 13178225 (+)
LOC110503633 arhgef1 coding downstream 117604 13180976 ~ 13241773 (+)
LOC110510079 LOC106577375 coding downstream 178403 13241775 ~ 13245669 (+)
LOC110510088 LOC106577399 coding downstream 182918 13246290 ~ 13290275 (+)
LOC110503641 LOC106577338 coding downstream 232140 13295512 ~ 13339225 (+)
G225455 NA non-coding upstream 79867 12971728 ~ 12971972 (+)
G225453 NA non-coding upstream 82008 12969555 ~ 12969831 (+)
G225441 NA non-coding upstream 106861 12944771 ~ 12944978 (+)
G225440 NA non-coding upstream 107619 12943962 ~ 12944220 (+)
G225439 NA non-coding upstream 108400 12942968 ~ 12943439 (+)
G225473 NA non-coding downstream 3101 13066473 ~ 13066920 (+)
G225475 NA non-coding downstream 4923 13068295 ~ 13068550 (+)
G225541 NA non-coding downstream 117064 13180436 ~ 13180641 (+)
G225544 NA non-coding downstream 124653 13188025 ~ 13188426 (+)
G225545 NA non-coding downstream 125319 13188691 ~ 13188901 (+)
LOC110510042 LOC106578847 other upstream 886 13047440 ~ 13074579 (+)
G225451 NA other upstream 85306 12966032 ~ 12966533 (+)
grik5 grik5 other upstream 390672 12497538 ~ 12664742 (+)
G225649 NA other downstream 428199 13491571 ~ 13491980 (+)
G225651 NA other downstream 430513 13493885 ~ 13494435 (+)
LOC110510206 LOC106577511 other downstream 454276 13517648 ~ 13520035 (+)
G225671 NA other downstream 482501 13545873 ~ 13546978 (+)
G225672 NA other downstream 486726 13550098 ~ 13550582 (+)

Expression


Co-expression Network