XLOC_021597


Basic Information

Item Value
gene id XLOC_021597
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 18134466 ~ 18136294 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044669
GAGTAGTAATAGAGAAGATCTGAATGTGAACAGATGGTCACTTGATTATGTTTGGTTCTGACAAAGCGTCTTGTTGAGGACATTTCCCAATCCAGAGCTGAATTCACATGAAGAGGAGGGACACTCGTTTTCCTCAGAAAACACAGGCTACATTATTGTTCAGCTGTGATCTGCCCAGAGAGACATGGAAAAGCACCAGGGAGCAGCTTTTCATATTCAGTAGGTCTTCTTTATGATGGTGATGCTATTGAACCTCAGGCTTCTTTGACAGAAGATTAAGTAAAGGATCATAAATTCAGGTatgctctttctttctttctttctttctttctttctttctttcttt
>TCONS_00044809
GCTGAATTCACATGAAGAGGAGGGACACTCGTTTTCCTCAGAAAACACAGGCTACATTATTGTTCAGCTGTGATCTGCCCAGAGAGACATGGAAAAGCACCAGGGAGCAGCTTTTCATATTCAGTAGGTCTTCTTTATGATGGTGATGCTATTGAACCTCAGGCTTCTTTGACAGAAGATTAAGTAAAGGATCATAAATTCAGAAACATGCAAGCATGTGCTGGAAAAGAGAAATATGTGTGAGGCTTGTCTGCAGGAATAAAGTAAAGCATAAACCAGGTGCTTTTCTCCTTGTGTGGCTCCTGTTCTTACAATCAGTGTCCAGCAGCAACCAAAGCTCTCGAGGCCAAAGCGGTCTCATTACACACACTGGACACACAGTTAAACGGCCCCTCTGGGAGCACAGTCAGACCACTGCTAATGACAGCTAAAGAATCATTTGGCACCAACTATAACTCATTCAGTGATTTGACACAATGAACTCCTGAGGTGCCTAGttgatttaaaatttaaaagtttatttgCATTCTTATTTTTAGAAAGTCAAACATTACAGCAATGGACAAAACACTTGAATAATCTCACTTGATTTGttggtttgagtaaaatgttaatataggtTTCATTTTGTAATAGTCTTATAACATTTCTTCCCAATTTCTAATTGTTTCAGCATTTCATTCTGAAaattatgttttcatttgttgaGATTAAAA
>TCONS_00044810
TTGGTGTCAAACGCGGAGACgagaaaattcaaataaataatctattatctcttctaaataatctaaatGCTACATTATTGTTCAGCTGTGATCTGCCCAGAGAGACATGGAAAAGCACCAGGGAGCAGCTTTTCATATTCAGGTCTTCTTTATGATGGTGATGCTATTGAACCTCAGGCTTCTTTGACAGAAGATTAAGTAAAGGATCATAAATTCAGAAACATGCAAGCATGTGCTGGAAAAGAGAAATATGTGTGAGGCTTGTCTGCAGGAATAAAGTAAAGCATAAACCAGGTGCTTTTCTCCTTGTGTGGCTCCTGTTCTTACAATCAGTGTCCAGCAGCAACCAAAGCTCTCGAGGCCAAAGCGGTCTCATTACACACACTGGACACACAGTTAAACGGCCCCTCTGGGAGCACAGTCAGACCACTGCTAATGACAGCTAAAGAATCATTTGGCACCAACTATAACTCATTCAGTGATTTGACACAATGAACTCCTGAGGTGCCTAGttgatttaaaatttaaaagtttatttgCATTCTTATTTTTAGAAAGTCAAACATTACAGCAATGGACAAAACACTTGAATAATCTCACTTGATTTGttggtttgagtaaaatgttaatataggtTTCATTTTGTAATAGTCTTATAACATTTCTTCCCAATTTCTAATTGTTTCAGCATTTCATTCTGAAaattatgttttcatttgttgaGATTAAAA
>TCONS_00044670
TGCTGTTTGTTTTCTCATTCTGTTTTAAATATGAAGTAGACATAGACAATTAAAAGTAAACAGGCAGAATGTACACAAACAtacatgtatttgaataatgataaatgaaaaatacatgctttttTAAATCACAGAAACATGCAAGCATGTGCTGGAAAAGAGAAATATGTGTGAGGCTTGTCTGCAGGAATAAAGTAAAGCATAAACCAGGTGCTTTTCTCCTTGTGTGGCTCCTGTTCTTACAATCAGTGTCCAGCAGCAACCAAAGCTCTCGAGGCCAAAGCGGTCTCATTACACACACTGGACACACAGTTAAACGGCCCCTCTGGGAGCACAGTCAGACCACTGCTAATGACAGCTAAAGAATCATTTGGCACCAACTATAACTCATTCAGTGATTTGACACAATGAACTCCTGAGGTGCCTAGttgatttaaaatttaaaagtttatttgCATTCTTATTTTTAGAAAGTCAAACATTACAGCAATGGACAAAACACTTGAATAATCTCACTTGAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044669 False 346 lncRNA 0.39 3 18134466 18135497
TCONS_00044809 False 716 lncRNA 0.38 5 18134562 18136294
TCONS_00044810 False 731 lncRNA 0.37 5 18134759 18136294
TCONS_00044670 True 521 lncRNA 0.37 2 18135571 18136168

Neighbor

gene id symbol gene type direction distance location
XLOC_021595 CR352232.1 coding upstream 2143 18129860 ~ 18132323 (+)
XLOC_021594 mfsd4ab coding upstream 19576 18103080 ~ 18114890 (+)
XLOC_021593 chia.6 coding upstream 140803 17980875 ~ 17993663 (+)
XLOC_021592 chia.6 coding upstream 186341 17939611 ~ 17948125 (+)
XLOC_021591 chia.4 coding upstream 201323 17926279 ~ 17933143 (+)
XLOC_021598 CR339055.1 coding downstream 152780 18289074 ~ 18289201 (+)
XLOC_021599 avpr2ab coding downstream 390734 18527028 ~ 18543359 (+)
XLOC_021600 NA coding downstream 552060 18688354 ~ 18691482 (+)
XLOC_021601 myh7bb coding downstream 586421 18722715 ~ 18757078 (+)
XLOC_021602 CR847953.2 coding downstream 595028 18731322 ~ 18731399 (+)
XLOC_021588 CR381647.1 non-coding upstream 260868 17873526 ~ 17873598 (+)
XLOC_021584 dre-mir-124-5 non-coding upstream 350925 17783413 ~ 17783541 (+)
XLOC_021583 CR381647.3 non-coding upstream 351422 17782508 ~ 17783044 (+)
XLOC_021582 NA non-coding upstream 358121 17770424 ~ 17776345 (+)
XLOC_021604 NA non-coding downstream 788176 18924470 ~ 18929002 (+)
XLOC_021606 CR788311.1 non-coding downstream 915191 19051485 ~ 19066987 (+)

Expression


Co-expression Network