LOC110510079 (LOC106577375)


Basic Information

Item Value
gene id LOC110510079
gene name LOC106577375
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13241775 ~ 13245669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591406.2
atttttttgtTCTTTTACTGTTTTGAGTTCAAGAACACTGCAGTCACTCAAGCATATATCCTGACACCGAGAGACCAACAAAAGAGGAAGGAAGGTTTATTCACAAGACAACTGGGTAGAAGTGTATAGCTGTGTTGAAAGGCACAACACTCAAAATAACATTGGACcaaaatacttttttataaaagGCCTTTTATTTTCTGCAACGGCTGGCAACCAATATAAAACACAGTGAAGAAGATGGTGGCCGTGACATTCTTGTTCCTCTGCTTCTGGGCTGTAGGTGTCCACGGTGACCTCAGCCGTATCCAGGTTACTCTGGAGCCAGACAGGCCCTCTCTGAGGGTGCAGCTCTCTCACACCGCCCACCTGCGCTGCTGCTACTCAGCCACAAGGGGAGCCGTGGAAACCACCTGGTTCATCAGCATCCAGACGGTCAACGGCACGTCCGCCCCGCAGGGAGTGGACCGGAGAGACAACCATGTGACAGTGGATGGGGGGAACCTGACTGCGGCAGGGGTCATGTGTCACACACTCATCCTGAGGGAGGCCCGTCTGAACGACTCAGGGTTGTACCAGTGTTTTCTAAACCACAGCGCCCTGCGGCCCTCTGTATACACCCACGGCACCTTCCTGCAGGTCTACaGGCCGATGGTGAAGATTCTGGACATCAGTGAAAGCACCAAGAACAGCATCCTGACTGCTGAGGGAATGTTACTGATGGTGGCAGTGCTtctgcatggtaccatgatgcTCCGTAAGATGAAGAAACTCAATCAACTGAAGAAGAAAAGGgtcaaagaggaagaggagaatatCTATGAGGGTCTAAATCTGGAGGAATGCTGCTCCACATATGATCAGATCCAGCGCTCTCTGGTGCAGGGCCCCTACCAAGACGTGGGAAACATGAttatggaggaggaggaaatccAACTGGAGAAGCCTTGaatgagaggggggaggaagagagggtgggagaagAGTAATTTGATAGAACAGAGTTGTGGTGAGGGTTTTGATATGAATTTTCTTAAAAACTGTCcccccccttacacacacacacacacacacacacacacacacacgtatgtttGAATTTATAGAGGTGACCTGCGTTTTCCTTGCAGCCTTTGCCTATATTTGAATCTAATTTCTTAGTGGACCAAAAAGACAGTAACCTACAATGTCAAAGGGAATTTGCTTTCAATTTAGCCTTTCATTACAAATGCCAATAGCTAAACACTTTATattcataaaatatatttttttctgcatGTTTGTATTTTCTATGCTTTTGTGTATGCATTggccaaatgttttttttccctccaATCTCCATAATTCAAGGCCTGAATTGTGCTTAGTAAATAAAATTATAAAAC

Function

NR:

description
B-cell antigen receptor complex-associated protein alpha chain-like

GO: NA

KEGG:

id description
K06506 CD79A, IGA; CD79A antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591406.2 True 1385 mRNA 0.46 5 13241775 13245669

Neighbor

gene id symbol gene type direction distance location
LOC110503633 arhgef1 coding upstream 2 13180976 ~ 13241773 (+)
LOC118945979 LOC106577047 coding upstream 63550 13121843 ~ 13178225 (+)
LOC110510042 LOC106578847 coding upstream 167196 13047440 ~ 13074579 (+)
LOC110510031 LOC106578847 coding upstream 178403 13051839 ~ 13063372 (+)
LOC110509994 LOC106595974 coding upstream 200094 13032077 ~ 13041681 (+)
LOC110510088 LOC106577399 coding downstream 621 13246290 ~ 13290275 (+)
LOC110503641 LOC106577338 coding downstream 49843 13295512 ~ 13339225 (+)
LOC110503652 trp-ii coding downstream 110943 13356612 ~ 13358505 (+)
LOC110510128 tryp coding downstream 135462 13381131 ~ 13388307 (+)
LOC110510160 LOC106577470 coding downstream 168505 13414174 ~ 13435615 (+)
G225553 NA non-coding upstream 17268 13223886 ~ 13224507 (+)
G225552 NA non-coding upstream 24722 13216842 ~ 13217053 (+)
G225551 NA non-coding upstream 28798 13212776 ~ 13212977 (+)
G225550 NA non-coding upstream 29858 13209393 ~ 13211917 (+)
G225547 NA non-coding upstream 44515 13197013 ~ 13197260 (+)
G225558 NA non-coding downstream 47700 13293369 ~ 13293590 (+)
G225562 NA non-coding downstream 53204 13298873 ~ 13299657 (+)
G225574 NA non-coding downstream 98178 13343847 ~ 13344080 (+)
G225582 NA non-coding downstream 100441 13346110 ~ 13347272 (+)
LOC110509979 LOC106574911 other upstream 239559 12985236 ~ 13022032 (+)
LOC110509972 LOC106596703 other upstream 264996 12972069 ~ 12977823 (+)
G225451 NA other upstream 275242 12966032 ~ 12966533 (+)
grik5 grik5 other upstream 580608 12497538 ~ 12664742 (+)
G225649 NA other downstream 245902 13491571 ~ 13491980 (+)
G225651 NA other downstream 248216 13493885 ~ 13494435 (+)
LOC110510206 LOC106577511 other downstream 271979 13517648 ~ 13520035 (+)
G225671 NA other downstream 300204 13545873 ~ 13546978 (+)
G225672 NA other downstream 304429 13550098 ~ 13550582 (+)

Expression


Co-expression Network