LOC110503641 (LOC106577338)


Basic Information

Item Value
gene id LOC110503641
gene name LOC106577338
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13295512 ~ 13339225 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969608.1
GGGAAGGAGTAGAGGCGATTATCCAAAGCGCGCTCACAGCTGAAATATTGGGGCCACATGCATCGGCAAAAGACGAGAACGCGCGCCCTGTGTCTTCTCTGCTTCCTTCTCCGATACTGTCGTTTCCTGCATTCCAGTTGATTGGGAAGGGGGGCCGGGACGACCACTGAGTAGAGAAATTCTAGGATAAGATGGAGGTTTGCGAGAGACTTTTGTGTCTGGCTGTGGTGTCCAGCGTTCTCTGCGTTGGCTCGGTTCTGGGGAAATACGTGAGAGGTATCGTCAACACCAAGGAGGACTGGTTGTTCCTCACTCGCTTCTGTTTTCTCACTGATTTTGGACGTCTGGACTTCAGGTTCCGCTACCAAAAGTCGCGATGCTGTCAGAATATATTGCTCTACTTTGATGACAGCTCTCAGTGGCCAGCTGTGTATAAGAAGCCGGACAAGGACTGCTACCAGAAGGAGGCGGTGTTGAGACCAGAGAATAACCAGGTTATCAACTTGACCACACGCTACACCTGGTCTGGCTGTGTGgtggaaggagagggagatgaggaggtgcTGAGTTGTGTGGGAGGTCGTAGTTTCCGCTCggtgagggagagatggtggtACATCGCTCTCAGCAAGTGTGGGggggAAGGTTTGCAGCTGGAGTATGAGATGAAGCTGACCAATGGCCAGTCTTTCTGGACACAACATTTCTCTGCAGACGAGTTTGGGATCCTGGAAACTGACATCACGTTCCTGGTTATCTTCTCCCTGGTCTTCATCCTCTCATGTTATTTTGCCTATAATCTGAAAGGAAGGCAGCTTCTCCATACGACATATAAGATGTTTATGACTGCGGCTGGTGTAGAGGttGTCAGCCTTCTGTTCCACTGTATCTACTGGGGCCTGTATGCCAGAGATGGAGTGGGCAACGGCAGTCTCAAGATAATGGggaaaTTACTGTTCTCTGTCAGTTTCCTGGTGTTCCTACTGATGCTGATCCTGCTGGGAAAAGGCTTCACTGTCACCagGGCGAGGATCAGCCACAGTGGCTCTGTCAAGCTGTCCATCTACATGACAGTCTACACCGTCACCTATATCATCCTCTTCATATACGAGGCAGAGttcTTTGACCCAGGTGAGGTGCTTTATGCATATGACAGCCCGGCGGGCTACGGTCTGATGGGTCTCCAGCTGCTGGCCTACGTGTGGTTCTGCTACGCCGTCCTGATCTCCCTCAAACACTACCCTGAGAAACAACCCTTCTACATCCCCTTCTTCACGGCATACACACTCTGGTTTTTCGCTGTGCCCGTCATGGCTCTGATAGCTAACTTTGGCATCCCTCGCTGGGCACGGGAGAAGATCGTCAACGGCATCCAACTGGGAATCCACCTCTATGCTCACATCGTATTCCTCGCTATCACGCGGCCCTCTGCAGCCAATAAGAACTTCCCATACCACGTGCGGACCTCTCAGATCGGGATCCTGCTGTCTAGTCCGAAGGCGGGTGTGGCGAGTGAGAGTTTCCCCCACCATGCCTATGGGAACAGCTCCTTCCTGGGCGACTCCCAGCCCAACTTCACAGAACTCTTCTCCATCCAGTCGGGCCCAGTGAAGACGGTGGAGGAGACGGTGGGCCGGAAGGGACAGGAAGTGCAGAGGAACAGTGAGCATAAGATCATCACCACCACGGCTGACCTGTCGTCACCCACCTtccccccactccctccccccaTGCTCCCCCGCCTCTCTGCccactccccccctcctcctccacgaCTCCCCTCCCACTTTACCGAGTACTTCAGCATGCAGGGGGGAGGGGGCGTGGGCACCAAGgcatgagacagacagagagtaagagggacacagagagaaggagaaagatcgagagggaggtggaggaagatcAGGTAGCACAGAAAACAGGCTATGTTTAGCCACGAGGGAAGGAGGCATGGATataaggaggaagagaaggggaagTCATCATAAGCAGACATGTGGAATAGAAGTTTGAAACGTCCCATTTTCACCTCTAAATAGAGAGAATGGGAAATGGCTGTGAGTTAAAGTGCTGAGCTTGTAAAAGAAAAAAAGAAGCAATAAATATTTGAACatgaacagggagagaggcacCGGGAGGGAGAGATGACAGAGTGGATGTAGCCTGACCAATAGAATGATAGGAGCGCACAGTGGAGACTGAACAAAACTCCTATGAACACTTTTATTCAAGAATTTATAAGGCATCAATGGAGAGGCTGAGGGAAACGTGTAAATAGCTGAAGAGAATGAGTTACCATTACTCTAAAATAGTTGCAGAGTTTATATTACAAAAGGGATGGTTTTTTCCCCACATTGTCAAATTCGAAGTGGTGCTGTGACCATTGCAGTTCTCATGCCATTACATTGTACAAGAGTAAAATGTTCACTCACATCCTGAAACAATACATTCATGTTTTTTTCTTCATGTTTGACAGATGTTGTTAAAACAAAATATTGAATTTCTCCATATATAATATGTTGGGATGATTTATATTCTTAGAAATGCTGATTGCTCCAGGCTATAGGATTGATATACTGATGTTTAAGTGTACAATGTTCAGTTTACTGTGGACCACTGAGGTACTGCTAAAACAAGCATGTCTCTAAACTGATTATACTCCATGTGCTCATACCTGAGTAACAGCGTGCCTGTTGTACTAACTTTGTATATTTCATACCATATAGGCTAGTGAGGAGGTGTTAATAATGTCACTTCTTCTGGAACCTTATGTCATACTGTCCCCAGACAACTGTTTCAACTCCCAATACTACTGTTCAGTTCTCACTGGAGTGCAAGATATTAGCTTGCTCTGAATGTAATTCCTTGATGTATGTAGACCTTGGTGAATGTATTAATGCAATAGAGCACAAGGAAAggggtgtttttttttacatagaaatCATACTTATAGCTTGTTTTACTTTCAATTTCAGCCTCCATCCTTGACACATGATTTAAGGAGGGAAAGTTGTCCAGCGAGGATATGAGCTAACTtcacaatcccccccccccccccgactagTATGTAATGATGTCATGTCAACTGTGTGAGGGGCTCACTGTTGTTTATCCATAAGTAGAAACAGTAGTTCTTCCTGACCATGAAAAGTCCTGGGCCCATAAACAACTAAAGCAAACCTTTTAGAGTAACTGTGAAAGTAGTAGCACCAACGTCCTGTTTGTCCTGCATGAAGCACTTTAATGTTCCCCTTCTCTTAGTTTTCTGTTCCGCCATTTATTTCAAAGTGACTTTGATTAGCGCTTTAATCTGAATTATACTTATCCACACACTACATCCAATGATATTCCGGTATCAAATATACAAATGTTACCTGTAGATATGTTCATATTAATCAATGTTATCAAGTGTCATTATCAGACATTTAAAAATGTACATGTATCTTAATAACATTAAGTTGATTTAAATAGCCTAATGATATCAATGTAAGGGGGTAGGGTGTAATTCACAAGATGGTGTCAAGGCCAATTTGCCACCTGTTTCTTCTAAGAAATGGAAATAATGGAAGTAATCAACTACattgtattttttgttttgtttagctTGTTAATATCTCAGTATGAAATGTGCAactctctttattttttttatccaatcTGTAAAACAAAAAGGTGTGGGGGAAAGAATGGTGGTTAATTGACTGTTTCTAATGGCTTAATTAATAGCCCTTTACTACAGAAAGACAATGTCTGGAGTAGGCTTGGGTTGGTCAGACTGGTACAGCACATGTTATGTACATGAGAACATACAGTCAAAGGTATAATGTAGTCTGTAAAAAAGAATGACACTTGAATTAGATTGTTCTGGTGTTCTAAGGGTTTTGTCTCTGTaggtgtatacagttgaagtacacttaggttggagtcattaaaactcgtttttcaaccacaccacaaatttcttaacaaactatagttttggcaagtcagttaggacatctac
>TU257956
AGTAGAAACAGTAGTTCTTCCTGACCATGAAAAGTCCTGGGCCCATAAACAACTAAAGCAAACCTTTTAGAGTAACTGTGAAAGTAGTAGCACCAACGTCCTGTTTGTCCTGCATGAAGCACTTTAATGTTCCCCTTCTCTTAGTTTTCTGTTCCGCCATTTATTTCAAAGTGACTTTGATTAGCGCTTTAATCTGAATTATACTTATCCACACACTACATCCAATGATATTCCGGTATCAAATATACAAATGTTACCTGTAGATATGTTCATATTAATCAATGTTATCAAGTGTCATTATCAGACATTTAAAAATGTACATGTATCTTAATAACATTAAGTTGATTTAAATAGCCTAATGATATCAATGTAAGGGGGTAGGGTGTAATTCACAAGATGGTGTCAAGGCCAATTTGCCACCTGTTTCTTCTAAGAAATGGAAATAATGGAAGTAATCAACTACattgtattttttgttttgtttagctTGTTAATATCTCAGTATGAAATGTGCAactctctttattttttttatccaatcTGTAAAACAAAAAGGTGTGGGGGAAAGAATGGTGGTTAATTGACTGTTTCTAATGGCTTAATTAATAGCCCTTTACTACAGAAAGACAATGTCTGGAGTAGGCTTGGGTTGGTCAGACTGGTACAGCACATGTTATGTACATGAGAACATACAGTCAAAGGTATAATGTAGTCTGTAAAAAAGAATGACACTTGAATTAGATTGTTCTGGTGTTCTAAGGGTTTTGTCTCTGTaggtgtatacagttgaagtacacttaggttggagtcattaaaactcgtttttcaaccacaccacaaatttcttaacaaactatagttttggcaagtcagttaggacatctactttgtgtatgacacaagtaatttttccaacaattgtttacagattatttcacttataattcactgtatcacaatttcagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggacaattcctgaaaatgatgtcatggcttcagaagcttctgataggctaattgacataatttgagtcaattggaggtgtacttgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatctaaagaaatcagccaagacctcagaaaacaattgtagacctccacaagtctggttcatccttgggagcaatttccaaatgcctgaaggtaccacgttcatctgtacaaacaatagtacgcaagtataaaccatGGGACTACGCtgacgtcataccgctcaggaaggagacgcattctgtctcctagagatgaacgtactttggtgagaaaagtgcaaatcaatcccagaacaacagcaaaggaccttgtgaagatgctggaggaaacaggtacaaaaatagctacatccacagtaaaattagccttatatcaatataacctgaaaggctgctcagcaaggtagaagccactgctccaaaactgccataaaaaagtcagactacggtttgcaactgcacagggggacaaagatcgtactttttggagaaatgtcctctggtctgatcacacaaaaatagaactgtttggtcataatgaacATCATTATgtgtggaggaaaaagggggaggcttgcaagccgaagaacaccatcccaactgtgaagcacggaagtggcagcatcatgttgtgggggtgctttgctgcaggagggacaggtgcacttcacaaaatagatggcatcatgagggaggaaaatgatgtggatatattgaagcaacatctcaagacatcagtcaggaagttagagcttggttgcaaatgggtcttccatttGGGTcttccatttgcaaccaagcataccccaagcatacttccaaagttgtggcaaaaaggacaacgaagtcaagttattggagtggccatcacaaagccctgacctcaatcctatagaaaatttgtgggcataactgaaaaagcatgtgcgagcaaggaggcctacaaacctgactcagttacgaggaatgggccataattcacccaatttattgtgggaagcttgtggaaggctacccaaaacgtttgacccaatttaaaggcaatgctaccaaatactaattgagtgtatgtaaacttctgacccactgggaatgtgatgaaagaaataaaagctgaaatcattctctactattattctgacatttcacattcttaaaataaagtgttgatcctaactggcccaagacagggaatttttactaggattaaatgtcaggaattgtgaaactgagtttaaatgtatttggctaaggtgtatgtaaacttctgacttcaactgtatgtctattGCCTTTACAGTCCACTTGTCCATGGTTACGGATGCCATTACTTGACTGAATAGATTGATATCGACAGGCAGGTTCCATTCATCCTGTACAACAAGCTGCATGATCAATTTATCTATGGTATTTTGTCTATTATACACAGACACAAGTGGAAGagcaaagggagaggagagggttttATATGCATGACAGACAACAGCACAGCTTCCTGGGTATTTCGAGAGGTCTAGTTAAGAGCACATTACTGAAGCACTGTTTGAAATGAATGCATTTTAATGGTGTCAAATTAGGATATTCTGAATACGCTGTACATACACTTTTTGCCAAATTAAAATGGTTGGTTTTATTAG

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0019236 response to pheromone biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969608.1 False 4006 mRNA 0.45 15 13295512 13337376
TU257956 True 2735 lncRNA 0.39 1 13336491 13339225

Neighbor

gene id symbol gene type direction distance location
LOC110510088 LOC106577399 coding upstream 5237 13246290 ~ 13290275 (+)
LOC110510079 LOC106577375 coding upstream 49843 13241775 ~ 13245669 (+)
LOC110503633 arhgef1 coding upstream 53739 13180976 ~ 13241773 (+)
LOC118945979 LOC106577047 coding upstream 117287 13121843 ~ 13178225 (+)
LOC110510042 LOC106578847 coding upstream 220933 13047440 ~ 13074579 (+)
LOC110503652 trp-ii coding downstream 19236 13356612 ~ 13358505 (+)
LOC110510128 tryp coding downstream 43755 13381131 ~ 13388307 (+)
LOC110510160 LOC106577470 coding downstream 76798 13414174 ~ 13435615 (+)
LOC110510198 LOC106577505 coding downstream 146931 13484307 ~ 13486285 (+)
apoe LOC106605689 coding downstream 166711 13504087 ~ 13511896 (+)
G225558 NA non-coding upstream 1922 13293369 ~ 13293590 (+)
G225553 NA non-coding upstream 71005 13223886 ~ 13224507 (+)
G225552 NA non-coding upstream 78459 13216842 ~ 13217053 (+)
G225551 NA non-coding upstream 82535 13212776 ~ 13212977 (+)
G225550 NA non-coding upstream 83595 13209393 ~ 13211917 (+)
G225574 NA non-coding downstream 6471 13343847 ~ 13344080 (+)
G225582 NA non-coding downstream 8734 13346110 ~ 13347272 (+)
G225583 NA non-coding downstream 12221 13349597 ~ 13356572 (+)
G225606 LOC106577440 non-coding downstream 54848 13392224 ~ 13394669 (+)
G225631 NA non-coding downstream 128837 13466213 ~ 13466678 (+)
LOC110509979 LOC106574911 other upstream 293296 12985236 ~ 13022032 (+)
LOC110509972 LOC106596703 other upstream 318733 12972069 ~ 12977823 (+)
G225451 NA other upstream 328979 12966032 ~ 12966533 (+)
grik5 grik5 other upstream 634345 12497538 ~ 12664742 (+)
G225649 NA other downstream 154195 13491571 ~ 13491980 (+)
G225651 NA other downstream 156509 13493885 ~ 13494435 (+)
LOC110510206 LOC106577511 other downstream 180272 13517648 ~ 13520035 (+)
G225671 NA other downstream 208497 13545873 ~ 13546978 (+)
G225672 NA other downstream 212722 13550098 ~ 13550582 (+)
LOC110510031 LOC106578847 coding upstream 273119 13051839 ~ 13063372 (+)
G225562 NA non-coding upstream 36834 13298873 ~ 13299657 (+)

Expression


Co-expression Network