LOC110503652 (trp-ii)


Basic Information

Item Value
gene id LOC110503652
gene name trp-ii
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13356612 ~ 13358505 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036969635.1
TCAAACAGTTCCATTAAACGGGGCGGCACACCAAATTCTGCATATAAACCAGGGGTGCAGATGAACCCCTTTCATCGACAGGATCATACAGCAACCATGATTTCTCTGGTCTTTGTTCTGCTCATTGGAGCCGCTTTTGCCACGGAGGACGACAAGATCGTTGGAGGGTATGAGTGCAAGGCCTACTCCCAGCCCCACCAGGTGTCTCTGAACTCTGGGTACCACTTCTGTGGTGGCTCCTTGGTCAATGAGAACTGGGTTGTGTCTGCAGCTCACTGCTACAAGTCccgTGTGGAGGTGCGTCTGGGCGAGCACAACATCCAGGTGACTGAGGGTAGCGAGCAGTTCATCTCTTCATCCCGCGTGATCCGTCACCCCAACTACAGCTCCTACAACATCGACAATGACATCATGCTGATCAAGCTGAGCAAGCCCGCCACCCTCAACACCTACGTGCAGCCTGTTGCTCTGCCCAGCAGCTGTGCCCCCGCTGGCACCATGTGTACCGTCTCTGGATGGGGCAACACCATGAGCTCCACTGCTGACAGCAACAAGTTGCAGTGCCTGAACATCCCCATCCTGTCCTACAGCGACTGTGACAACTCCTACCCTGGCATGATCACCAACGCCATGTTCTGTGCTGGATACCTGGAGGGAGGCAAGGACTCTTGCCAGggtgacTCCGGTGGCCCAGTGGTGTGCAACGGTGAGCTGCAGGGTGTTGTGTCCTGGGGTTATGGCTGTGCCGAGCCCGGTAACCCCGGTGTCTACGCCAAGgTATGCATCTTCAACGACTGGCTGACCAGCACCATGCTCACCTACTAAGTTTGATCCTAGCTTCGGTCCTCCAGCACGGTCCTACAACTTTACAGCATCGTTTGTAGTTCAACATCCATCTTATGTGCTGGAGATTAAACACTAATGActaataaataatttaaaataa

Function

NR:

description
LOW QUALITY PROTEIN: uncharacterized protein LOC110503652

GO:

id name namespace
GO:0007586 digestion biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG:

id description
K01312 PRSS1_2_3; trypsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036969635.1 True 946 mRNA 0.53 6 13356612 13358505

Neighbor

gene id symbol gene type direction distance location
LOC110503641 LOC106577338 coding upstream 19236 13295512 ~ 13339225 (+)
LOC110510088 LOC106577399 coding upstream 66337 13246290 ~ 13290275 (+)
LOC110510079 LOC106577375 coding upstream 110943 13241775 ~ 13245669 (+)
LOC110503633 arhgef1 coding upstream 114839 13180976 ~ 13241773 (+)
LOC118945979 LOC106577047 coding upstream 178387 13121843 ~ 13178225 (+)
LOC110510128 tryp coding downstream 22626 13381131 ~ 13388307 (+)
LOC110510160 LOC106577470 coding downstream 55669 13414174 ~ 13435615 (+)
LOC110510198 LOC106577505 coding downstream 125802 13484307 ~ 13486285 (+)
apoe LOC106605689 coding downstream 145582 13504087 ~ 13511896 (+)
LOC110510206 LOC106577511 coding downstream 159150 13517648 ~ 13520035 (+)
G225583 NA non-coding upstream 40 13349597 ~ 13356572 (+)
G225582 NA non-coding upstream 9340 13346110 ~ 13347272 (+)
G225574 NA non-coding upstream 12532 13343847 ~ 13344080 (+)
G225562 NA non-coding upstream 56955 13298873 ~ 13299657 (+)
G225606 LOC106577440 non-coding downstream 33719 13392224 ~ 13394669 (+)
G225631 NA non-coding downstream 107708 13466213 ~ 13466678 (+)
G225642 NA non-coding downstream 115742 13474247 ~ 13474533 (+)
G225640 NA non-coding downstream 121393 13479898 ~ 13480109 (+)
G225645 LOC106577505 non-coding downstream 121616 13480121 ~ 13482256 (+)
LOC110510042 LOC106578847 other upstream 305659 13047440 ~ 13074579 (+)
LOC110509979 LOC106574911 other upstream 354396 12985236 ~ 13022032 (+)
LOC110509972 LOC106596703 other upstream 379833 12972069 ~ 12977823 (+)
G225451 NA other upstream 390079 12966032 ~ 12966533 (+)
grik5 grik5 other upstream 695445 12497538 ~ 12664742 (+)
G225649 NA other downstream 133066 13491571 ~ 13491980 (+)
G225651 NA other downstream 135380 13493885 ~ 13494435 (+)
G225671 NA other downstream 187368 13545873 ~ 13546978 (+)
G225672 NA other downstream 191593 13550098 ~ 13550582 (+)

Expression


Co-expression Network