LOC110503661 (trp-i)


Basic Information

Item Value
gene id LOC110503661
gene name trp-i
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13359882 ~ 13360962 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110503661
ATGAAAGACTTACTTTCccacccctttccctctctctttctcccgtctctctcttcctcttataCCCAAAGCCACGTGGAGGTGCGTCTGGGCGAGCACAACATTGCCAGGACTGAGGGTAATGAGCAGTTCATCTCTTCTTTCCGCATTATCCCCCACCCCAAGATCGTACAGATCACACAACATCAACAATGACATCATGCTGATCAAGCTGAGCAAACCCACCACCCTCAACACCTACGTGCAGCCTGTTGCTCTGCCCAGCAGCTGTGCCCCCGCTGGCACCATGTGTACCGTCTCTGGATGGGGCGACACCATGAGCTCCACCGCCGATAGCAACAAGCTGCAGTGCCTGAACCTCCCCATCCTGTCTTTCAATGACTGTAACAACTCCTTGCATGATAACTAGCGCTGTGTTCTGTGCTGGATACATGGAGGGAGGCAAGGACTATTGCCAGggggACTCTGAGCTGCATGGTGTTGTGTCCTGGGGTTATGGTTGAGCCGAGTCCGGTAACCCTGGTGTCTATGCCAAGGTGTGCATCTTCAACGACTGGCTGACCAGCAACATGGCCAACTAA

Function

NR:

description
trypsin-2-like

GO:

id name namespace
GO:0007586 digestion biological_process
GO:0006508 proteolysis biological_process
GO:0005615 extracellular space cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110503661 True 581 mRNA 0.54 4 13359882 13360962

Neighbor

gene id symbol gene type direction distance location
LOC110510138 trp-ii coding downstream 12010 13346109 ~ 13347872 (-)
LOC110510146 mrpl17 coding downstream 18037 13339193 ~ 13341845 (-)
cxcr3.1 cxcr3b coding downstream 430818 12925454 ~ 12929064 (-)
LOC110503616 LOC106605556 coding downstream 476866 12880885 ~ 12883016 (-)
tlr21 LOC106605556 coding downstream 484194 12864942 ~ 12875688 (-)
LOC110510120 LOC106577461 coding upstream 15893 13376855 ~ 13378759 (-)
LOC110510106 LOC106577440 coding upstream 27447 13388409 ~ 13410671 (-)
LOC110510167 LOC106577478 coding upstream 74634 13435596 ~ 13439420 (-)
LOC110510175 LOC106577487 coding upstream 79822 13440784 ~ 13459048 (-)
LOC110505114 NA coding upstream 102672 13463634 ~ 13474497 (-)
G226206 NA non-coding downstream 16795 13342756 ~ 13343087 (-)
G226291 NA non-coding downstream 25523 13333214 ~ 13334359 (-)
G226242 NA non-coding downstream 106669 13253005 ~ 13253213 (-)
G226241 NA non-coding downstream 107006 13252587 ~ 13252876 (-)
G226240 NA non-coding downstream 107777 13251870 ~ 13252105 (-)
G226314 tryp non-coding upstream 20144 13381106 ~ 13387143 (-)
G226325 NA non-coding upstream 53266 13414228 ~ 13415124 (-)
G226326 NA non-coding upstream 54267 13415229 ~ 13429753 (-)
G226334 NA non-coding upstream 68844 13429806 ~ 13430023 (-)
G226335 LOC106577470 non-coding upstream 71363 13432325 ~ 13433104 (-)
G226294 LOC100136012 other downstream 15507 13344074 ~ 13344375 (-)
G226224 NA other downstream 135367 13223884 ~ 13224515 (-)
G226187 NA other downstream 179610 13177178 ~ 13180272 (-)
G226124 NA other downstream 292525 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 886822 12472299 ~ 12473060 (-)
wu:fe05a04 LOC106578221 other upstream 565712 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 638774 13995196 ~ 14023153 (-)
G227060 NA other upstream 1067831 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 1162218 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 1237827 14598789 ~ 14638314 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012977 zgc:171509 coding NC_007129.7 CM002902.2 39060687 ~ 39065115 (+)