LOC110510167 (LOC106577478)


Basic Information

Item Value
gene id LOC110510167
gene name LOC106577478
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13435596 ~ 13439420 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591533.2
ATCTATGAGGTTATAGGGGACGGAGGGCGGGTCTAAACGTGCACCGGAAGGTTGTGGTTGAACTTTACCGGTGTGTAGCTAGAATTACCGCCGGACACGCACAAACAGTCAACCATGGGCAGTGTGTTGGCTGCCagctccccccctcccccaggcAGTGGCGTTGTCCAGGGGGCCCCTGGGTTGGTGTCAGTCCCCCCAGGGTTCTCCATGCCCCCCgtccctcccccctctgtcccggGACAGCCAGCGGTTGAGATAGGAAGCCCCCTCCCCAACCCTGGTACCTATGAGGAGTGTCATCGCAAGTGCAAAGAGGTGTTCCCCATCCAGATGGAAGGAGTGCGACTGGTGGTCAACAAGGGCCTGAGTAATCACTTCCAGGTCAGTCATACAGTCACTCTCAGCACCTTGGCTGAATCTGGCTACCGGTTTGGTGCCACCTACGTGGGCACTCAACAGACAGGACCTGCTGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACACCGGTAGTCTGAACGCCCAGGTTATCCACCAGCTCACCAGCGCCGTGCGCTCTAAAATAGCCATCCAGACTCAGCAGCACAAGTTTGTGAACTGGCAGTGTGACATGGAGTATCGTGGTGATGACTTCACCTCTGCTGTTACCCTGGGCAACCCAGACGTCCTCCTTGGCTCTGGTATTATCGTGGCTCACTACCTTCAGTCCATCAGTCCAGCCCTGGCGTTGGGAGGAGAGCTGGTCTACCACCGGAGGCCTGGGGAGGAGGGAGCAGTCACCTCCCTAATGGGCAGATACACAGGCAATAATTATGTTGCCACATTGACTCTAGGAGGTGCTGGTGCTCATGCAACATACTACCACAGAGCCAATGACCAGCTGCAGCTGGGGGTGGAGTTTGAGGGCAGCATGCGGACGCAGGAGACCGCAGTATCGTTTGGGTATCAGCTGGACCTCCCTAAAGCCAACCTGCTCTTTAAAGGTTCGGTAGACAGTAACTGGGTGGTGGGGGCGGTCCTGGAGAAGAAGCTGctgcccctgcctctctccttggCCCTGGGAGCCTTCCTTAACCAAAAGAAGAACAAGTTCCAGTGTGGCTTCAATGTCACCGTTGGCTAGACCTCCTCCAGCCGCCTCGACACACTGGGCCATGCTTGGACcagcacagaaacacacagtcctGGGCTTGTCATGTATCTACTGGATTCAGACTCTCCTATACTGTGAATTGTGGGGCAGAGTGAGCGAGGGGGTTACTCTATACCATGGAGCTAGGCCTACATATTGTAGCACAAGTCTATTTCCTTCTGGTATATATATAATGTGATACCCAACGAATAGAGAGCATCAGGTGATGCAGTCTAACATGTGATTAGACTAATATTGTCGCTGTCTGATAACTGCATCTACATTTTTGGCAATTTCCAAACAATACAGAAACTATAGGAAAGGAAAATAGGGCTATATTTTACTGTTAACGAATATACACTTCagtattttgaatacattttcttGGTCCTAGAGTCATGAAATGTTCAGAGTACACTTACAGCTTTCAATATGTAATAGAAATGGGCAGAAATGGAGTTGAAGTTCTCACCAGACCGTGACAATATAATGAAATTATTTAGAATCATAAACAACTTTTGTATCTTTGGTTTTTGATGTTAAAGACCATTAAggactg
>XM_036969720.1
AATCTATGAGGTTATAGGGGACGGAGGGCGGGTCTAAACGTGCACCGGAAGGTTGTGGTTGAACTTTACCGGTGTGTAGCTAGAATTACCGCCGGACACGCACAAACAGTCAACCATGGGCAGTGTGTTGGCTGCCagctccccccctcccccaggcAGTGGCGTTGTCCAGGGGGCCCCTGGGTTGGTGTCAGTCCCCCCAGGGTTCTCCATGCCCCCCgtccctcccccctctgtcccggGACAGCCAGCGGTTGAGATAGGAAGCCCCCTCCCCAACCCTGGTACCTATGAGGAGTGTCATCGCAAGTGCAAAGAGGTGTTCCCCATCCAGATGGAAGGAGTGCGACTGGTGGTCAACAAGGGCCTGAGTAATCACTTCCAGGTCAGTCATACAGTCACTCTCAGCACCTTGGCTGAATCTGGCTACCGGTTTGGTGCCACCTACGTGGGCACTCAACAGACAGGACCTGCTGAGTCCTTCCCAGTCATGGTGGGAGACATGGACAACACCGGTAGTCTGAACGCCCAGGTTATCCACCAGCTCACCAGCGCCGTGCGCTCTAAAATAGCCATCCAGACTCAGCAGCACAAGTTTGTGAACTGGCAGTGTGACATGGAGTATCGTGGTGATGACTTCACCTCTGCTGTTACCCTGGGCAACCCAGACGTCCTCCTTGGCTCTGGTATTATCGTGGCTCACTACCTTCAGTCCATCAGTCCAGCCCTGGCGTTGGGAGGAGAGCTGGTCTACCACCGGAGGCCTGGGGAGGAGGGAGCAGTCACCTCCCTAATGGGCAGATACACAGGAGGTGCTGGTGCTCATGCAACATACTACCACAGAGCCAATGACCAGCTGCAGCTGGGGGTGGAGTTTGAGGGCAGCATGCGGACGCAGGAGACCGCAGTATCGTTTGGGTATCAGCTGGACCTCCCTAAAGCCAACCTGCTCTTTAAAGGTTCGGTAGACAGTAACTGGGTGGTGGGGGCGGTCCTGGAGAAGAAGCTGctgcccctgcctctctccttggCCCTGGGAGCCTTCCTTAACCAAAAGAAGAACAAGTTCCAGTGTGGCTTCAATGTCACCGTTGGCTAGACCTCCTCCAGCCGCCTCGACACACTGGGCCATGCTTGGACcagcacagaaacacacagtcctGGGCTTGTCATGTATCTACTGGATTCAGACTCTCCTATACTGTGAATTGTGGGGCAGAGTGAGCGAGGGGGTTACTCTATACCATGGAGCTAGGCCTACATATTGTAGCACAAGTCTATTTCCTTCTGGTATATATATAATGTGATACCCAACGAATAGAGAGCATCAGGTGATGCAGTCTAACATGTGATTAGACTAATATTGTCGCTGTCTGATAACTGCATCTACATTTTTGGCAATTTCCAAACAATACAGAAACTATAGGAAAGGAAAATAGGGCTATATTTTACTGTTAACGAATATACACTTCagtattttgaatacattttcttGGTCCTAGAGTCATGAAATGTTCAGAGTACACTTACAGCTTTCAATATGTAATAGAAATGGGCAGAAATGGAGTTGAAGTTCTCACCAGACCGTGACAATATAATGAAATTATTTAGAATCATAAACAACTTTTGTATCTTTGGTTTTTGATGTTAAAGACCATTAAggactg

Function

NR:

description
mitochondrial import receptor subunit TOM40 homolog

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0005741 mitochondrial outer membrane cellular_component

KEGG:

id description
K11518 TOM40; mitochondrial import receptor subunit TOM40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591533.2 False 1696 mRNA 0.51 10 13435596 13439419
XM_036969720.1 True 1667 mRNA 0.51 10 13435596 13439420

Neighbor

gene id symbol gene type direction distance location
LOC110510106 LOC106577440 coding downstream 24925 13388409 ~ 13410671 (-)
LOC110510120 LOC106577461 coding downstream 56837 13376855 ~ 13378759 (-)
LOC110503661 trp-i coding downstream 74634 13359882 ~ 13360962 (-)
LOC110510138 trp-ii coding downstream 87724 13346109 ~ 13347872 (-)
LOC110510146 mrpl17 coding downstream 93751 13339193 ~ 13341845 (-)
LOC110510175 LOC106577487 coding upstream 1364 13440784 ~ 13459048 (-)
LOC110505114 NA coding upstream 24214 13463634 ~ 13474497 (-)
LOC110510190 LOC106577499 coding upstream 40699 13480119 ~ 13481941 (-)
LOC110510231 LOC106577531 coding upstream 119073 13558493 ~ 13678675 (-)
rs19 LOC100689943 coding upstream 278824 13718244 ~ 13723892 (-)
G226335 LOC106577470 non-coding downstream 2492 13432325 ~ 13433104 (-)
G226334 NA non-coding downstream 5573 13429806 ~ 13430023 (-)
G226326 NA non-coding downstream 5843 13415229 ~ 13429753 (-)
G226325 NA non-coding downstream 20472 13414228 ~ 13415124 (-)
G226314 tryp non-coding downstream 48453 13381106 ~ 13387143 (-)
G226361 NA non-coding upstream 22138 13461558 ~ 13461866 (-)
G226371 NA non-coding upstream 47586 13487006 ~ 13487717 (-)
G226372 NA non-coding upstream 48634 13488054 ~ 13488306 (-)
G226374 NA non-coding upstream 52731 13492151 ~ 13492412 (-)
G226294 LOC100136012 other downstream 91221 13344074 ~ 13344375 (-)
G226224 NA other downstream 211081 13223884 ~ 13224515 (-)
G226187 NA other downstream 255324 13177178 ~ 13180272 (-)
G226124 NA other downstream 368239 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 962536 12472299 ~ 12473060 (-)
wu:fe05a04 LOC106578221 other upstream 487254 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 560316 13995196 ~ 14023153 (-)
G227060 NA other upstream 989373 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 1083760 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 1159369 14598789 ~ 14638314 (-)

Expression


Co-expression Network