LOC110510175 (LOC106577487)


Basic Information

Item Value
gene id LOC110510175
gene name LOC106577487
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13440784 ~ 13459048 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591547.2
AGATAGCGCTAACCAATTTGAGTTCGAAACAGGACATGCTGATTGGATAGTTAATGTACCTGCGCAGCCAGACGAACGAAGGGTTCCATTAGTTACCACAGCCGCAAAGTAAACATGGGTTATATCATAAACATGCATAAAAATAGGTTTATATTGTTAGGCATACGGTTATCaggttaaaatcacattttaagaagataaattgtataAATGGGCGGGGTTTATGATTTTGTGGCTGTCGTAACTAGTGACGACAGTAGGAAAGCGAAAGAGACAACAAGCTAAAGGCGAGCGCGCGGCCATGTtgaattgtctttttttttttaaagaagagaCAAAAGAGAGACAAGTCGGTGGTTTTCACGAAACACAAACCGTATCATAATACTTGGAACATTTGCTCTAATTAAGTTAACGAGAGAAGACGTCCGATGAACATTAAGGTTACCTGGAGTTGAAAGCAAATGCAACTAAGGGTGTCAGCTCCACATCTACCACAGCAAAAGAAGAGCACAACAGCAGAACACACATTGTGACTGTCCAAGTGAACAACACAAAGGGTTGGAACTATTACCCTCAGTGTTTTGTATGTCATTTTTTGAGGTTGCCAATAGCAAAATTGCCTCATAAAACACCAAAAAACACACCAAGTTGAAAGACTCAGAAACATAGGAATAGTCCATGTGAATCAGAGGACAGTACAGGTCTGTTTGAATGTAAAAGACTAAAAGCACTTGAGACTCTAACAAAGAAACGTACAACCACTTCAGTCCAGGAAAAAAGCTTAAAAGGTCTTTGAACATAAACAATATTAAAAACTTAACAGGTTGTTGTACACAGAACTTCAGAAAAGGCATTTTTCACCAGGAATAAGACTGCTTCAGGATAATTTACTTTAGATGTTTGAACTCTGTTGAATTCTGAAACACGTTCACATAGGTTTGATTTTGAGCGGATATATGATCAATTTATTCATATAAATGCTAATTTCTCCCTTTTTGGGGAGCGTCTTGTAAATATACCATTTTCGTATGCCAGACTCTTCTTTTCAAGAGATCTGTACGTATAAGTGTATACATTCTTTAAATTAGAAATCCTGAAAACaaggttttagtttttttttttgtgagctaAATAACAAGGACATTAGTTCCACGAGTGGAAAAACAATCTCTAAGGAAATATTGAACAAAACAGTTTAGCTAAGTGACTAAGGAATTGACAGACTGAAGGAAAAGCTCTCTAAGCCATGTCTACAGCAAGAACGGAGAACCCAACATCCATCATGGGACTGAACAAGCCCAATGGGCAGTTTAGAGGACCACTCAAACCAGTTGGACTAACATCAGGATCCCTGGCAACTGCCCCACAACCAGATGCCCAACAGAAGGGAGGTAACATTCCCCAGGGCAGTGGGGGTATCCGGTTTGGCGATGACTGGAAGAAGTGCCTGCAGCTTCCACAGAAAGACTGCAGATTTAGAACATCAGATGTGACATCGACCAAGGGGAATGAGTTTGAGGACTACTGCCTGAAGCGGGAGCTACTGATGGGGATCTTTGAGATGGGCTGGGAGAAACCATCTCCTGTACAGGAGGAGAGCATCCCCATTGCTCTGTCAGGAAGGGACATCCTTGCCCGGGCTAAGAATGGCACCGGGAAAAGCGGAGCCTACCTCATTCCTCTCCTGGAGAGGATAGACCTGAAGAAGGACCACATACAGGccaTGGTGATGGTTCCTACTCGAGAGTTAGCCCTGCAGGTGAGCCAGATCAGCATCCAGGTGAGCAAGCACATGGGTGGGGTCAAGGTCATGGCCACCACAGGAGGCACCAACCTGAGGGACGACATCATGCGTCTGGACGAGACTGTGCATGTGGTGATAGCCACACCAGGCAGGATCCTGGACCTGATAAAGAAGGGAGTGGCCAAAGTGGATAAAGTCCAGATGATGGTGATGGATGAGgCAGACAAGCTGCTGTCTCAGGACTTTGTGGTCCTGATCGAAGACATCATTAGCTTCCTGGCTAAGGGTCGTCAGATCCTACTCTACTCTGCCACCTTCCCCATCAGTGTGCAGAAGTTCATGgCGAAGCACCTTTCAAAGCCCTATGAGATCAACCTGATGGATGAGCTGACACTGAAGGGCATCACCCAGTACTATGCCTATGTCACTGAGAGGCAGAAAGTCCACTGCCTCAACACCCTCTTCTCCAGGCTCCAGATCAACCAGTCCATTATCTTCTGTAACTCCACCCAGCGGGTTGAGCTGCTGGCCAAGAAGATAACGCAGCTGGGCTACTCCTGCTTCTACATCCACGCCAAGATGATGCAGGAGTATAGAAACCGTGTGTTCCATGACTTCAGAAACGGACTCTGCAGGAACTTGGTCTGCACGGATCTGTTCACCAGGGGAATTGACATTCAAGCGGTGAACGTAGTGATCAACTTTGACTTCCCCAAGAACGCTGAGACGTACCTGCATCGCATCGGCAGATCAGGGAGGTTTGGTCACCTGGGTCTGGCCATCAACCTGATCACCTCTGAGGACCGCTTCAACCTGAAGTCCATTGAGGACCAGCTGGTGACCGACATTAAGCCCATCCCCGGCAGCATCGACAAGGGTCTGTACGTGGCGGAGTTCCACTCTGCCGACCCAGACGCAGAAGACGAGATCAGAGGCAAGGACGGCGAGTTAAGCGCAGCATAAATGGAGAACAAGAGGCGTCTGGCATTCATCACACCCACCCCCTGCTGCGCACAGACATTAAGTTTAGTTTCTGACTGAATATTTAAATTCTACAGGATGCTTTTTCTTTTTCACAGGGGCAAAGTTTACAGCAGTGGTCAGTTTGTTTTGTCACAGTTTACAGCTGTTTTTTAAACAACATGATATGTATCCAACCTGCCAACTGTCAATTTTCTAAGTCTGCTGACTTTCTGTATTGTCAGTGTATCACTGTAGTGGCTTCTACAGTCACATTTCATAATTTCCTGTTGAAAAGGCCCTCCTCGCTTGTCAGGTTCACTTCCTATAGACTTATTTCTGAGCAGATGACTGTCGAGGAAACCAAAGCTGAACATGTTGATAGGGAATAATGGATTTACTCAAAAAACCAAAAGGACCCCCTTTGCTTTAACAGCTGTCTGGGGAATGCTATCATGGTGCTATACGGTGGAAATACGAATAGAACTACATTTTAAAAGTTTCTTTGTTTTTAAGTGTTCGTGCTGTGACTTAAGTCATACATGAAAGGCACCTACATGAATAGTTTGTCGCAGATGCACACTGAGTATTGATTAGTTTACTTATTGTTTGTTTATATTTTACAGCCTCCTTAGTGGGCTATGGCACCAGACAGACTcgtaactttttgggcaacaAATTCCTTGGACAAGGAGATGATGGCAATAGAACCTGACACGAAGAGGGCATTGATACAGGGCAAACATTTTATTTAGATACACTGACTTActgacccccccccaaaaaaaaaaatgtttttttattatttctgTAGACATGCTGAAGCCAGTCATCTTATTCTATCGCTCTCTGACTCTTCTGTTCATCTCTCGCACTCTTAACTCACTTGCGTGCCTTAATCTAACCTCCGCTCAGTGTTCATACTGTACGTCTGAATGGATCTGTCTGTGTGAACCAGAGCTCCAGGAAGTAGCTTGAAAGTTCTGTTCTAAAAAGAGCTTCTGGTAATGTGTTCTTTAGCTCTCACCTTGAGTCAGTGCTTGTTTTCTCAGCTTCCCAGAACTCTCCTATGTGTTTTTAATGTGGAGTTGTTGAAACTGATCTAAGGTCAATTTTGCATCCCCTATCCTAGTGGTTAATATTAGATTTTTGGGGATGAAAACCTGACCCTAGATCTATCTGTAGCTTTTCAGAGACACCAGGGAGCAGAAATGGTCACAGGGTGGGGGACCCTAATCTCTAACTCAAGAAGGGATTTGTTACACTACTGGCAATTGTCATTGAGGAATCATAGCATTTCAGTCATATTTTCTCACAATTGTTATGCAATATATTTTTCCTCTTTCGTACAGCTATATTGGGTAGtctgacagaggaatggagggaagatTGTAGCAGTACTGTCATTGGCTACAGTACAGATCTACTTTTAAAAGGATAAAATATTGCCAAATACAATCTTATAGCGACAACCCTAACAGATCCTACAATCTTCAACATTAGAGATGGAGCAGATGGCTGGCCTCCGCATTGAGTTTAGCACCAGCAGAACCAAACAAGGACCATTGTCATGCATTATTTAAACAGCCTACAATACTGAGCACTGTTTCCCCACATCTGGCTCTGGAGTATCCCTGTAAATGCTGGAGTTTATTTAACTTATTCCATTGTCAATTATCCTCAATTGAGGCACTTGAGCACTGAAATGGGACTTATGATTTGAGCATTGTCAAGTGTCTGTGTTTAACCAATTAATAACGTTTTATCTCAGCACACCAGCCGCCCACAGCAACAAGCGATAGCTTTGGGAGAAGGCTATAAAATGGGCAAGAGAAGCAACATTTGCCAGGGGTACTCCAGGGCTGACTATGGTAGACTTcattacttttttttttcttttttttttctcttatcCATCTCATTTGGTTTGAGTAATGCTCCTGTTGTCTTTTTGGCAGAGGTCACCTCCTGAGCTAAAGTGGTAGGAGGATGGCTAAGCAAAGTTTATTCTCGTGCCAATTGTGTCAATGCCAGCACCTTTGAAGGAATCAAATAAAGGCCTGCTGATTCTCCATC
>XM_021591554.2
gtggctgtggcaACTAGTGACGACCCAGTAGGAAAGCGAAAGAGAAAACCAGCTGAAGGCGAGCGTGCGGCCATGTTGAATTGTAATTTTGTTTTTAAAGAAGAGACAAAAGAGAGACAAGTCGGTTACCTGGAGTTGAAAGCAAATGCAACTAAGGGTGTCAGCTCCACATCTACCACAGCAAAAGAAGAGCACAACAGCAGAACACACATTGTGACTGTCCAAGTGAACAACACAAAGGGTTGGAACTATTACCCTCAGTGTTTTGTATGTCATTTTTTGAGGTTGCCAATAGCAAAATTGCCTCATAAAACACCAAAAAACACACCAAGTTGAAAGACTCAGAAACATAGGAATAGTCCATGTGAATCAGAGGACAGTACAGGTCTGTTTGAATGTAAAAGACTAAAAGCACTTGAGACTCTAACAAAGAAACGTACAACCACTTCAGTCCAGGAAAAAAGCTTAAAAGGTCTTTGAACATAAACAATATTAAAAACTTAACAGGTTGTTGTACACAGAACTTCAGAAAAGGCATTTTTCACCAGGAATAAGACTGCTTCAGGATAATTTACTTTAGATGTTTGAACTCTGTTGAATTCTGAAACACGTTCACATAGGTTTGATTTTGAGCGGATATATGATCAATTTATTCATATAAATGCTAATTTCTCCCTTTTTGGGGAGCGTCTTGTAAATATACCATTTTCGTATGCCAGACTCTTCTTTTCAAGAGATCTGTACGTATAAGTGTATACATTCTTTAAATTAGAAATCCTGAAAACaaggttttagtttttttttttgtgagctaAATAACAAGGACATTAGTTCCACGAGTGGAAAAACAATCTCTAAGGAAATATTGAACAAAACAGTTTAGCTAAGTGACTAAGGAATTGACAGACTGAAGGAAAAGCTCTCTAAGCCATGTCTACAGCAAGAACGGAGAACCCAACATCCATCATGGGACTGAACAAGCCCAATGGGCAGTTTAGAGGACCACTCAAACCAGTTGGACTAACATCAGGATCCCTGGCAACTGCCCCACAACCAGATGCCCAACAGAAGGGAGGTAACATTCCCCAGGGCAGTGGGGGTATCCGGTTTGGCGATGACTGGAAGAAGTGCCTGCAGCTTCCACAGAAAGACTGCAGATTTAGAACATCAGATGTGACATCGACCAAGGGGAATGAGTTTGAGGACTACTGCCTGAAGCGGGAGCTACTGATGGGGATCTTTGAGATGGGCTGGGAGAAACCATCTCCTGTACAGGAGGAGAGCATCCCCATTGCTCTGTCAGGAAGGGACATCCTTGCCCGGGCTAAGAATGGCACCGGGAAAAGCGGAGCCTACCTCATTCCTCTCCTGGAGAGGATAGACCTGAAGAAGGACCACATACAGGccaTGGTGATGGTTCCTACTCGAGAGTTAGCCCTGCAGGTGAGCCAGATCAGCATCCAGGTGAGCAAGCACATGGGTGGGGTCAAGGTCATGGCCACCACAGGAGGCACCAACCTGAGGGACGACATCATGCGTCTGGACGAGACTGTGCATGTGGTGATAGCCACACCAGGCAGGATCCTGGACCTGATAAAGAAGGGAGTGGCCAAAGTGGATAAAGTCCAGATGATGGTGATGGATGAGgCAGACAAGCTGCTGTCTCAGGACTTTGTGGTCCTGATCGAAGACATCATTAGCTTCCTGGCTAAGGGTCGTCAGATCCTACTCTACTCTGCCACCTTCCCCATCAGTGTGCAGAAGTTCATGgCGAAGCACCTTTCAAAGCCCTATGAGATCAACCTGATGGATGAGCTGACACTGAAGGGCATCACCCAGTACTATGCCTATGTCACTGAGAGGCAGAAAGTCCACTGCCTCAACACCCTCTTCTCCAGGCTCCAGATCAACCAGTCCATTATCTTCTGTAACTCCACCCAGCGGGTTGAGCTGCTGGCCAAGAAGATAACGCAGCTGGGCTACTCCTGCTTCTACATCCACGCCAAGATGATGCAGGAGTATAGAAACCGTGTGTTCCATGACTTCAGAAACGGACTCTGCAGGAACTTGGTCTGCACGGATCTGTTCACCAGGGGAATTGACATTCAAGCGGTGAACGTAGTGATCAACTTTGACTTCCCCAAGAACGCTGAGACGTACCTGCATCGCATCGGCAGATCAGGGAGGTTTGGTCACCTGGGTCTGGCCATCAACCTGATCACCTCTGAGGACCGCTTCAACCTGAAGTCCATTGAGGACCAGCTGGTGACCGACATTAAGCCCATCCCCGGCAGCATCGACAAGGGTCTGTACGTGGCGGAGTTCCACTCTGCCGACCCAGACGCAGAAGACGAGATCAGAGGCAAGGACGGCGAGTTAAGCGCAGCATAAATGGAGAACAAGAGGCGTCTGGCATTCATCACACCCACCCCCTGCTGCGCACAGACATTAAGTTTAGTTTCTGACTGAATATTTAAATTCTACAGGATGCTTTTTCTTTTTCACAGGGGCAAAGTTTACAGCAGTGGTCAGTTTGTTTTGTCACAGTTTACAGCTGTTTTTTAAACAACATGATATGTATCCAACCTGCCAACTGTCAATTTTCTAAGTCTGCTGACTTTCTGTATTGTCAGTGTATCACTGTAGTGGCTTCTACAGTCACATTTCATAATTTCCTGTTGAAAAGGCCCTCCTCGCTTGTCAGGTTCACTTCCTATAGACTTATTTCTGAGCAGATGACTGTCGAGGAAACCAAAGCTGAACATGTTGATAGGGAATAATGGATTTACTCAAAAAACCAAAAGGACCCCCTTTGCTTTAACAGCTGTCTGGGGAATGCTATCATGGTGCTATACGGTGGAAATACGAATAGAACTACATTTTAAAAGTTTCTTTGTTTTTAAGTGTTCGTGCTGTGACTTAAGTCATACATGAAAGGCACCTACATGAATAGTTTGTCGCAGATGCACACTGAGTATTGATTAGTTTACTTATTGTTTGTTTATATTTTACAGCCTCCTTAGTGGGCTATGGCACCAGACAGACTcgtaactttttgggcaacaAATTCCTTGGACAAGGAGATGATGGCAATAGAACCTGACACGAAGAGGGCATTGATACAGGGCAAACATTTTATTTAGATACACTGACTTActgacccccccccaaaaaaaaaaatgtttttttattatttctgTAGACATGCTGAAGCCAGTCATCTTATTCTATCGCTCTCTGACTCTTCTGTTCATCTCTCGCACTCTTAACTCACTTGCGTGCCTTAATCTAACCTCCGCTCAGTGTTCATACTGTACGTCTGAATGGATCTGTCTGTGTGAACCAGAGCTCCAGGAAGTAGCTTGAAAGTTCTGTTCTAAAAAGAGCTTCTGGTAATGTGTTCTTTAGCTCTCACCTTGAGTCAGTGCTTGTTTTCTCAGCTTCCCAGAACTCTCCTATGTGTTTTTAATGTGGAGTTGTTGAAACTGATCTAAGGTCAATTTTGCATCCCCTATCCTAGTGGTTAATATTAGATTTTTGGGGATGAAAACCTGACCCTAGATCTATCTGTAGCTTTTCAGAGACACCAGGGAGCAGAAATGGTCACAGGGTGGGGGACCCTAATCTCTAACTCAAGAAGGGATTTGTTACACTACTGGCAATTGTCATTGAGGAATCATAGCATTTCAGTCATATTTTCTCACAATTGTTATGCAATATATTTTTCCTCTTTCGTACAGCTATATTGGGTAGtctgacagaggaatggagggaagatTGTAGCAGTACTGTCATTGGCTACAGTACAGATCTACTTTTAAAAGGATAAAATATTGCCAAATACAATCTTATAGCGACAACCCTAACAGATCCTACAATCTTCAACATTAGAGATGGAGCAGATGGCTGGCCTCCGCATTGAGTTTAGCACCAGCAGAACCAAACAAGGACCATTGTCATGCATTATTTAAACAGCCTACAATACTGAGCACTGTTTCCCCACATCTGGCTCTGGAGTATCCCTGTAAATGCTGGAGTTTATTTAACTTATTCCATTGTCAATTATCCTCAATTGAGGCACTTGAGCACTGAAATGGGACTTATGATTTGAGCATTGTCAAGTGTCTGTGTTTAACCAATTAATAACGTTTTATCTCAGCACACCAGCCGCCCACAGCAACAAGCGATAGCTTTGGGAGAAGGCTATAAAATGGGCAAGAGAAGCAACATTTGCCAGGGGTACTCCAGGGCTGACTATGGTAGACTTcattacttttttttttcttttttttttctcttatcCATCTCATTTGGTTTGAGTAATGCTCCTGTTGTCTTTTTGGCAGAGGTCACCTCCTGAGCTAAAGTGGTAGGAGGATGGCTAAGCAAAGTTTATTCTCGTGCCAATTGTGTCAATGCCAGCACCTTTGAAGGAATCAAATAAAGGCCTGCTGATTCTCCATC

Function

NR:

description
probable ATP-dependent RNA helicase ddx6

GO: NA

KEGG:

id description
K12614 DDX6, RCK, DHH1; ATP-dependent RNA helicase DDX6/DHH1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591547.2 False 4783 mRNA 0.44 13 13440784 13458901
XM_021591554.2 True 4464 mRNA 0.44 13 13440784 13459048

Neighbor

gene id symbol gene type direction distance location
LOC110510167 LOC106577478 coding downstream 1364 13435596 ~ 13439420 (-)
LOC110510106 LOC106577440 coding downstream 30113 13388409 ~ 13410671 (-)
LOC110510120 LOC106577461 coding downstream 62025 13376855 ~ 13378759 (-)
LOC110503661 trp-i coding downstream 79822 13359882 ~ 13360962 (-)
LOC110510138 trp-ii coding downstream 92912 13346109 ~ 13347872 (-)
LOC110505114 NA coding upstream 4586 13463634 ~ 13474497 (-)
LOC110510190 LOC106577499 coding upstream 21071 13480119 ~ 13481941 (-)
LOC110510231 LOC106577531 coding upstream 99445 13558493 ~ 13678675 (-)
rs19 LOC100689943 coding upstream 259196 13718244 ~ 13723892 (-)
LOC110510240 LOC106577561 coding upstream 284485 13743533 ~ 13883559 (-)
G226335 LOC106577470 non-coding downstream 7680 13432325 ~ 13433104 (-)
G226334 NA non-coding downstream 10761 13429806 ~ 13430023 (-)
G226326 NA non-coding downstream 11031 13415229 ~ 13429753 (-)
G226325 NA non-coding downstream 25660 13414228 ~ 13415124 (-)
G226314 tryp non-coding downstream 53641 13381106 ~ 13387143 (-)
G226361 NA non-coding upstream 2510 13461558 ~ 13461866 (-)
G226371 NA non-coding upstream 27958 13487006 ~ 13487717 (-)
G226372 NA non-coding upstream 29006 13488054 ~ 13488306 (-)
G226374 NA non-coding upstream 33103 13492151 ~ 13492412 (-)
G226294 LOC100136012 other downstream 96409 13344074 ~ 13344375 (-)
G226224 NA other downstream 216269 13223884 ~ 13224515 (-)
G226187 NA other downstream 260512 13177178 ~ 13180272 (-)
G226124 NA other downstream 373427 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 967724 12472299 ~ 12473060 (-)
wu:fe05a04 LOC106578221 other upstream 467626 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 540688 13995196 ~ 14023153 (-)
G227060 NA other upstream 969745 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 1064132 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 1139741 14598789 ~ 14638314 (-)

Expression


Co-expression Network