LOC110505114


Basic Information

Item Value
gene id LOC110505114
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13463634 ~ 13474497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005041143.1
TCAACTCAGTGGCCCTgcccatgtgaacagacattggttataaactatgaaacacgcccttctctcccctcctatataaagcccttgacgaaaatgtaactttCTGTTCCGAGGATGTTAGGGCGACAGTCCTACGTTAAAAGGGCTCAGATAATAAGCTGTTCCAAGGACGTGTGGACTTGAGGTCCCCACGTTGAAAGGACAAAGACCACCTACCGAACTAAGCCAACCTTAGAGAACCTAACGAAATTAGCATTGAATTTCAATGTGAATGTGACAACCTACACCCCGGAAGGATGAATTttgactataccagccagaatatagcatgagcttaaaaGTATGGCAACTTTTCTCTGAAGAAGCACGAATTGTGCAAAACGTCaggatttaaaaaacatttttttttagagtTCATAGTtcactttgaactcttattcactccagaagtgatacctcctagccgttgagttagcagcagTCGCTAAACATGGGCTTggagaggacggacagagtatccattctaccacgcTCCAGTTCACCACTAGACATTCTTCAGAGGGCCAGAGATCCATAAAAGACAAACCGGCCTTCCATTGACAACCAatctactgaagcgcagctcagaACCATGATTCCTGGAACAATCCCTGTGAAGTCGGAATGCTAGAAAACGGGTGATGAGTCCTTCTACGTAAACCCTGCAGATGGCTACTTAAAATTCCTAACCTTGACGCAGCAGAAGCATAGAGAATTCCTTAAGGGAGGTAACATTTTCTTCTCATCACCGTGCAAGATATCTCCAAGTCTGCGTTTTACCAACTCCCTGCCCTGTCCCAAATGGTCACCACAGAACTTAATTTCAAACCCAAACAACCGTGATGAAGGCCCATGCGCCACAGAGTAAGAAAGATTGGATCAAGGACAGATTAGCATATATTTGATCAATTCCAATATTTGTGCTTAGGTAAATATtgtatgtatttatttgatttaaaatCAGTATGTCCGTGGTCATTATGTTATATAGGTTAATTGAACTGTATTATGTTCTATATTTATGGTAAACATCTTGCCCACCTAAATGCCATCCTGAGACAGATTATGCCTATTATAATTTATTACGACGATAGGCCAGTATTGATAGCAAGCATTACATCTAGTAACCTTTGACCACACTCTCCTTATCCTGCTTCAGTATGTGATAACATGTCCTATGTTTATTTATAATCTTAACGAACCACTGACTGTAATTCTGTCCTAAAACACACACTTTGCATAATACTGGTTGTATATTTTATGAGTTGAAAGAGCTACAAATTGGGTGATTTGTTTAGTTCCCCTATGACAGTGTAAATTATAATATCCTCAGTATAGGTCATTAGTCCAGTAAAAACGATAGGTTTGTCCCATTTATCTGCATATTTTAATATTCAAATAAACAGATTTATGAAATATTCTTCCATAATGTTATGCATTTGACTCCG
>XR_002470685.2
cgtgaatgaggatgtgttcaaccctcatttccgaagcttctctattccgTTTTGTTTTGTTGCCGTTAAACATGTGTTTTGTAGCCTAatagagtttacccaggatcggatccactctttgcgtccgtggactacacCTCTCTGTTCTTCGTGCCCTTTCTCCGgctggagatctgttggcggattggattgtctgactgactacAACCTTTTTGTATATGACCATGATTCCTGGAACAATCCCTGTGAAGTCGGAATGCTAGAAAACGGGTGATGAGTCCTTCTACGTAAACCCTGCAGATGGCTACTTAAAATTCCTAACCTTGACGCAGCAGAAGCATAGAGAATTCCTTAAGGGAGGTAACATTTTCTTCTCATCACCGTGCAAGATATCTCCAAGTCTGCGTTTTACCAACTCCCTGCCCTGTCCCAAATGGTCACCACAGAACTTAATTTCAAACCCAAACAACCGTGATGAAGGCCCATGCGCCACAGAGTAAGAAAGATTGGATCAAGGACAGATTAGCATATATTTGATCAATTCCAATATTTGTGCTTAGGTAAATATtgtatgtatttatttgatttaaaatCAGTATGTCCGTGGTCATTATGTTATATAGGTTAATTGAACTGTATTATGTTCTATATTTATGGTAAACATCTTGCCCACCTAAATGCCATCCTGAGACAGATTATGCCTATTATAATTTATTACGACGATAGGCCAGTATTGATAGCAAGCATTACATCTAGTAACCTTTGACCACACTCTCCTTATCCTGCTTCAGTATGTGATAACATGTCCTATGTTTATTTATAATCTTAACGAACCACTGACTGTAATTCTGTCCTAAAACACACACTTTGCATAATACTGGTTGTATATTTTATGAGTTGAAAGAGCTACAAATTGGGTGATTTGTTTAGTTCCCCTATGACAGTGTAAATTATAATATCCTCAGTATAGGTCATTAGTCCAGTAAAAACGATAGGTTTGTCCCATTTATCTGCATATTTTAATATTCAAATAAACAGATTTATGAAATATTCTTCCATAATGTTATGCATTTGACTCCG
>TU258934
CAGAGGGCCAGAGATCCATAAAAGACAAACCGGCCTTCCATTGACAACCAatctactgaagcgcagctcagagtaaatatttattgcattgtCCTTTTTCAAATGgccggttatttagaatgcataagattctgtatttacgatagcataacttctccctttgttactcagtcttcccgttctgtcactcaaacccaaccccctcactttgtgtaaccagcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005041143.1 False 1487 mRNA 0.39 3 13463634 13473700
XR_002470685.2 False 1080 mRNA 0.38 3 13463634 13474497
TU258934 True 222 lncRNA 0.43 1 13472923 13473144

Neighbor

gene id symbol gene type direction distance location
LOC110510175 LOC106577487 coding downstream 4586 13440784 ~ 13459048 (-)
LOC110510167 LOC106577478 coding downstream 24214 13435596 ~ 13439420 (-)
LOC110510106 LOC106577440 coding downstream 52963 13388409 ~ 13410671 (-)
LOC110510120 LOC106577461 coding downstream 84875 13376855 ~ 13378759 (-)
LOC110503661 trp-i coding downstream 102672 13359882 ~ 13360962 (-)
LOC110510190 LOC106577499 coding upstream 5622 13480119 ~ 13481941 (-)
LOC110510231 LOC106577531 coding upstream 83996 13558493 ~ 13678675 (-)
rs19 LOC100689943 coding upstream 243747 13718244 ~ 13723892 (-)
LOC110510240 LOC106577561 coding upstream 269036 13743533 ~ 13883559 (-)
LOC110510354 LOC106578237 coding upstream 412051 13886548 ~ 13902511 (-)
G226361 NA non-coding downstream 1768 13461558 ~ 13461866 (-)
G226335 LOC106577470 non-coding downstream 30530 13432325 ~ 13433104 (-)
G226334 NA non-coding downstream 33611 13429806 ~ 13430023 (-)
G226326 NA non-coding downstream 33881 13415229 ~ 13429753 (-)
G226325 NA non-coding downstream 48510 13414228 ~ 13415124 (-)
G226371 NA non-coding upstream 12509 13487006 ~ 13487717 (-)
G226372 NA non-coding upstream 13557 13488054 ~ 13488306 (-)
G226374 NA non-coding upstream 17654 13492151 ~ 13492412 (-)
G226375 NA non-coding upstream 18188 13492685 ~ 13493093 (-)
G226355 NA non-coding upstream 18945 13493442 ~ 13494253 (-)
G226294 LOC100136012 other downstream 119259 13344074 ~ 13344375 (-)
G226224 NA other downstream 239119 13223884 ~ 13224515 (-)
G226187 NA other downstream 283362 13177178 ~ 13180272 (-)
G226124 NA other downstream 396277 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 990574 12472299 ~ 12473060 (-)
wu:fe05a04 LOC106578221 other upstream 452177 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 525239 13995196 ~ 14023153 (-)
G227060 NA other upstream 954296 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 1048683 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 1124292 14598789 ~ 14638314 (-)

Expression


Co-expression Network