LOC110510190 (LOC106577499)


Basic Information

Item Value
gene id LOC110510190
gene name LOC106577499
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13480119 ~ 13481941 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591565.2
TGGGCTTACATCTACAGCTCTGGTTTCGACTATATATACAGCATGGCACTGGCCtgatagacacacagacagactgaatacacagagatacacCAGGAAAAAAACAGTGACAAACGCAAATATGAAGGTGTTGGCGGTGCTTGCAATTGCTATACTCTCTGGTTGCCATGCTAACCTATTCTATGCCGATGAGCCCAAGCCACAGCTGGAGCAGCTGACAGATGCCTTCTGGGACTACGTCGCCAAGGCAACAAAAACTGCCGATGACACGGTCCAGATGATCAGGAAGTCTCAGTTGGGACAGGATGTCAAtGACCGCATCACAGAGAGCGCTGACGTGGCCAGCCAATACGCAGTCTCCCTTCAGGAGCAGCTTCCTCCTGCAGCCAAGGACCTGATGACCAAGATTACCCAGGAGGCTGAGGTGCTGAGAGAGCGTCTGGAGCAGGACCTGGGCAGTGTCAAGGGGAAACTGGAGCCCTACGCAGAGGAGATGAAGACACAAGTCCAGCAGAGAGTGGAGCAGCTGAAACAGGATCTGGCTCCCTATGCAGAGTCCCTGGACTCCGAGACCCTGAGGGCCACCCTGCTCCAGAAGAGTGAGGAGCTGAAGGGGAGTCTGGAGCAGAGTGTGAAGGAGCTACAGTCCCAGCTGGGTCCCTACACAGATGAGCTGAAGCAGAAAGTGGACCTGCACCTGCAGGACTTCCAGAAGAGAGTGGCCCCCCTGACCGAGAACCTCCAGAGCGAGCTGACCACCAGAGCTCAGATGGTGCAGCAGAGCCTGGCCCCCTATGCTGAGGACCTGAAGGACAAGCTGGACCCCTACGCCCAGGACCTGAAGGCCCAGCTCACCGCCCTCTACCAGGCCTTCACCAACACCAACTAAATGGCCCAAAGCTACACCACTTCTTGATCCTCTGAAACGTTTTGAGTGATTCTGTCATAACCTGAACTGCACTGTAAAACATGGAAATTAAACTGGGCATATACCCAGAGCatcatatttattattatttagaaaAATGTAAACCAAACATTCACACTCAAATATTTATatgtgtttgttttaccttgttgAATAATGTCAACCTTTTataatttcatacattttttaaagaaaaataaaGATATTGAAATGATGAACATAA

Function

NR:

description
apolipoprotein A-I-like

GO: NA

KEGG:

id description
K08760 APOA4; apolipoprotein A-IV

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591565.2 True 1151 mRNA 0.50 4 13480119 13481941

Neighbor

gene id symbol gene type direction distance location
LOC110505114 NA coding downstream 5622 13463634 ~ 13474497 (-)
LOC110510175 LOC106577487 coding downstream 21071 13440784 ~ 13459048 (-)
LOC110510167 LOC106577478 coding downstream 40699 13435596 ~ 13439420 (-)
LOC110510106 LOC106577440 coding downstream 69448 13388409 ~ 13410671 (-)
LOC110510120 LOC106577461 coding downstream 101360 13376855 ~ 13378759 (-)
LOC110510231 LOC106577531 coding upstream 76552 13558493 ~ 13678675 (-)
rs19 LOC100689943 coding upstream 236303 13718244 ~ 13723892 (-)
LOC110510240 LOC106577561 coding upstream 261592 13743533 ~ 13883559 (-)
LOC110510354 LOC106578237 coding upstream 404607 13886548 ~ 13902511 (-)
LOC110510306 LOC106578229 coding upstream 424404 13906345 ~ 13909374 (-)
G226361 NA non-coding downstream 18253 13461558 ~ 13461866 (-)
G226335 LOC106577470 non-coding downstream 47015 13432325 ~ 13433104 (-)
G226334 NA non-coding downstream 50096 13429806 ~ 13430023 (-)
G226326 NA non-coding downstream 50366 13415229 ~ 13429753 (-)
G226371 NA non-coding upstream 5065 13487006 ~ 13487717 (-)
G226372 NA non-coding upstream 6113 13488054 ~ 13488306 (-)
G226374 NA non-coding upstream 10210 13492151 ~ 13492412 (-)
G226375 NA non-coding upstream 10744 13492685 ~ 13493093 (-)
G226355 NA non-coding upstream 11501 13493442 ~ 13494253 (-)
G226294 LOC100136012 other downstream 135744 13344074 ~ 13344375 (-)
G226224 NA other downstream 255604 13223884 ~ 13224515 (-)
G226187 NA other downstream 299847 13177178 ~ 13180272 (-)
G226124 NA other downstream 412762 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 1007059 12472299 ~ 12473060 (-)
wu:fe05a04 LOC106578221 other upstream 444733 13909746 ~ 13927861 (-)
LOC110538195 LOC106578103 other upstream 517795 13995196 ~ 14023153 (-)
G227060 NA other upstream 946852 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 1041239 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 1116848 14598789 ~ 14638314 (-)

Expression


Co-expression Network