LOC110510206 (LOC106577511)


Basic Information

Item Value
gene id LOC110510206
gene name LOC106577511
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13517648 ~ 13520035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591590.2
TACTGATTACGTCAGCGTTCTGGGATATATAGAGGGACTCCAGTCAGTCTGTCAGACAAACTGGGGTTATTTTCTCTCTGAGACAGAAAACAGCCAACAGTCAAGATGAAACTGTCCATTGCCATTGCCGTGTTGATGCTTGTGTTCGCCGCACACACAGaggcTCAGGAGGCTGAGAAGACCATTGAGGAGCATTTCACCACCTTCGGCAATCAGATGAAGGACCTAAGTGAGGACCTGACCGTCAAGACCAAGGACATAGTTGAAAAGATTGGGGACAGCGAGTTCATCACCAAAACcagGACCTGGTTCACTGAGCAGTTTGACAAGATGAAGGCCAAGATCGATGAGACCTTCCCCAAGCAGTAGTAAGCCTGTACACCTCTGACCCTGCCTGTCTAAGagctccccctccccccaccactaCGCTTCTTGCGCTGTCTTGTCTGGTGACGCGGTTGCTGTGACTCTGACACTTGCGTTGTGCCGACAGACACCAAGGTTATATTCGACCTCTGTGAAGAGACTGACATCATCTCTGTGTAATTGTTATGGCTTGCTTTAATAACCTGGAACACAATGAGCTGAACAATAAAGATACCTTTGTGATAAAACTA
>TU258078
TGGTGACTACTGATTACGTCAGCGTTCTGGGATATATAGAGGGACTCCAGTCAGTCTGTCAGACAAACTGGGGTTATTTTCTCTCTGAGACAGAAAACAGCCAACAGTCAAGATGAAACTGTCCATTGCCATTGCCGTGTTGATGCTTGTGTTCGCCGCACACACAGaggcTCAGGAGGCTGAGAAGACCATTGAGGAGCATTTCACCACCTTCGGCAATCAGATGAAGGACCTAAGTGAGGACCTGACCGTCAAGACCAAGGACATAGTTGAAAAGATTGGGGACAGCGAGTTCATCACCAAAACcagGACCTGGTTCACTGAGCAGTTTGACAAGATGAAGGCCAAGATCGATGAGACCTTCCCCAAGCAGTAGTAAGCCTGTACACCTCTGACCCTGCCTGTCTAAGagctccccctccccccaccactaCGCTTCTTGCGCTGTCTTGTCTGGTGACGCGGTTGCTGTGACTCTGACACTTGCGTTGTGCCGACAGACACCAAGGTTATATTCGACCTCTGTGAAGAGACTGACATCATCTCTGTGTAATTGTTATGGCTTGCTTTAATAACCTGGAACACAATGAGCTGAACAATAAAGATACCTTTGTGATAAAACTATA

Function

NR:

description
apolipoprotein C-I-like

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591590.2 False 617 mRNA 0.48 4 13517655 13520033
TU258078 True 626 TUCP 0.48 4 13517648 13520035

Neighbor

gene id symbol gene type direction distance location
apoe LOC106605689 coding upstream 5759 13504087 ~ 13511896 (+)
LOC110510198 LOC106577505 coding upstream 31370 13484307 ~ 13486285 (+)
LOC110510160 LOC106577470 coding upstream 82040 13414174 ~ 13435615 (+)
LOC110510128 tryp coding upstream 129348 13381131 ~ 13388307 (+)
LOC110503652 trp-ii coding upstream 159150 13356612 ~ 13358505 (+)
apoa2 apoa2 coding downstream 9629 13529662 ~ 13532686 (+)
LOC110510221 LOC106577525 coding downstream 18967 13539000 ~ 13541326 (+)
LOC110503682 trp-iii coding downstream 481119 14001152 ~ 14003950 (+)
LOC110510707 LOC106593417 coding downstream 553367 14073400 ~ 14075519 (+)
LOC110510523 LOC106573797 coding downstream 620253 14140286 ~ 14152666 (+)
G225650 NA non-coding upstream 24249 13493161 ~ 13493406 (+)
G225645 LOC106577505 non-coding upstream 35399 13480121 ~ 13482256 (+)
G225640 NA non-coding upstream 37546 13479898 ~ 13480109 (+)
G225642 NA non-coding upstream 43122 13474247 ~ 13474533 (+)
G225631 NA non-coding upstream 50977 13466213 ~ 13466678 (+)
G225714 NA non-coding downstream 137702 13657735 ~ 13658053 (+)
G225727 NA non-coding downstream 171797 13691830 ~ 13692056 (+)
G225729 NA non-coding downstream 173804 13693837 ~ 13745225 (+)
G225749 LOC102796463 non-coding downstream 198207 13718240 ~ 13723979 (+)
G225731 LOC106577561 non-coding downstream 231733 13751766 ~ 13759267 (+)
G225651 NA other upstream 23220 13493885 ~ 13494435 (+)
G225649 NA other upstream 25675 13491571 ~ 13491980 (+)
LOC110510042 LOC106578847 other upstream 466702 13047440 ~ 13074579 (+)
LOC110509979 LOC106574911 other upstream 515439 12985236 ~ 13022032 (+)
LOC110509972 LOC106596703 other upstream 540876 12972069 ~ 12977823 (+)
G225671 NA other downstream 25840 13545873 ~ 13546978 (+)
G225672 NA other downstream 30065 13550098 ~ 13550582 (+)
G225710 NA other downstream 125536 13645569 ~ 13646011 (+)
G225859 LOC106605594 other downstream 470203 13990236 ~ 13992021 (+)

Expression


Co-expression Network