rs19 (LOC100689943)


Basic Information

Item Value
gene id rs19
gene name LOC100689943
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13718244 ~ 13723892 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160511.2
GAACGCGATCCGCCCGTTTAAACACGGGCTGGAAACCCCGTCTTACCCTCTTCCTCTCGCTGTCCACAAGCAAGATGCCTGGTGTCACAGTGAAAGACGTCAACCAGCAGGAGTTTGTCCGTGCCCTGTCGGCTTTCCTGAAGAAGTCAGGAAAGCTGAAGGTCCCAGATTGGGTGGACATTGTCAAGCTGGCCAAACACAAGGAGCTGGCCCCCAGCGACGAGAACTGGTTCTACACCAGAGCTGCTTCCACAGTGCGCCACCTGTACCTGCGTGGGGGTGCCGGTGTGGGCTCCATGACCAAAATTTATGGTGGTCGCCAGAGGAACGGTGTGTGTCCCGCCCACTTCAGTGTTGGCTCCAAAAACGTGGCCCGCAAGGTGCTGCAGGCCCTCGAGCTTCTCAAGATGGTGGAGAAGAACCCCAACGGTGGTCGCAGACTAACCGCCCAGGGAACCAGAGATCTGGACAGGATTGCTGGCCAGGTTGCAGCTGCGAAGTTGCCCCCCAAGGCTGCCCCCACAGTTTAATAAATATTTTTTGGAGAAGG

Function

NR:

description
40S ribosomal protein S19

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02966 RP-S19e, RPS19; small subunit ribosomal protein S19e

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160511.2 True 550 mRNA 0.57 6 13718244 13723892

Neighbor

gene id symbol gene type direction distance location
LOC110510231 LOC106577531 coding downstream 39569 13558493 ~ 13678675 (-)
LOC110510190 LOC106577499 coding downstream 236303 13480119 ~ 13481941 (-)
LOC110505114 NA coding downstream 243747 13463634 ~ 13474497 (-)
LOC110510175 LOC106577487 coding downstream 259196 13440784 ~ 13459048 (-)
LOC110510167 LOC106577478 coding downstream 278824 13435596 ~ 13439420 (-)
LOC110510240 LOC106577561 coding upstream 19641 13743533 ~ 13883559 (-)
LOC110510354 LOC106578237 coding upstream 162656 13886548 ~ 13902511 (-)
LOC110510306 LOC106578229 coding upstream 182453 13906345 ~ 13909374 (-)
wu:fe05a04 LOC106578221 coding upstream 185854 13909746 ~ 13927861 (-)
LOC110510327 LOC106578208 coding upstream 207955 13931847 ~ 13940558 (-)
G226447 NA non-coding downstream 25076 13692956 ~ 13693168 (-)
G226446 NA non-coding downstream 26603 13691425 ~ 13691641 (-)
G226429 NA non-coding downstream 78470 13638805 ~ 13639774 (-)
G226422 NA non-coding downstream 94853 13620555 ~ 13623391 (-)
G226340 NA non-coding downstream 130966 13517724 ~ 13587278 (-)
G226484 NA non-coding upstream 24247 13748139 ~ 13811352 (-)
G226492 NA non-coding upstream 56939 13780831 ~ 13784759 (-)
G226504 NA non-coding upstream 104938 13828830 ~ 13904843 (-)
G226524 NA non-coding upstream 123552 13847444 ~ 13858839 (-)
G226571 NA non-coding upstream 176471 13900363 ~ 13900743 (-)
G226294 LOC100136012 other downstream 373869 13344074 ~ 13344375 (-)
G226224 NA other downstream 493729 13223884 ~ 13224515 (-)
G226187 NA other downstream 537972 13177178 ~ 13180272 (-)
G226124 NA other downstream 650887 13066873 ~ 13067357 (-)
G225171 LOC106605713 other downstream 1245184 12472299 ~ 12473060 (-)
LOC110538195 LOC106578103 other upstream 275844 13995196 ~ 14023153 (-)
G227060 NA other upstream 704901 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 799288 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 874897 14598789 ~ 14638314 (-)

Expression


Co-expression Network