LOC110510327 (LOC106578208)


Basic Information

Item Value
gene id LOC110510327
gene name LOC106578208
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 13931847 ~ 13940558 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591719.2
GAGGTAGGTGGCTAACGGCATGTTCGCTTATGTACAATTCATGTTTAGCTGTAACGTTAGTTCGCTAATATCGTTTAAGACTTATGCCTACATATTTACCATATCGTTATGGTGGGGCAGTTGGTTTCCGTGAACTAAACGTGTCCGTAATATGCTTAATTGTTATTTATCCGTTTGAATTGTTAGCCTGCcagctaatgtagctagctaggttgtaATTCGAACTTGGTGTTAGCTCAGCAAACCATTGAGGTATAAGACTAAGGACATCCAGTCTTCCACGATGGACTCAGACATACTGAATATAGAGGAAATAGTGATGGGGAAGGGGCCACCAGATCCCCCTGCAGAACTGACCACTGAGAAACCAGCAGAACACTACAAACCCATTGCCTCCTTCAAAGCACCACCTCCACCCACCATTCAACCATATCAGCATGAGAACCTGCAGTGTTTCCAGTGCTTCATCACCTTCTGTAACTCCAAAGCCAAGGAGAGGCACATGAAGAAGAGCCATCGTGAGGAGTACAAGcagcagctccagcagGGAGATACTCTGTTCACCTGCTATGTGTGTGACCGTACCTTTCCGTCCTCGGAGGAGCTGACCCAGCACCAGGGCTCACACAATAAGGAGGACAAGCCCTTCAAGTGTCCCCACTGCCAGGAGAGCTTCCGCACCTTCTCTGAGCTGACGACCCACAGGAGACAGGTCTGTCCAGAGAGGCAATTTGTGTGTAAGGACTGCAGTGAGACCTTCCGCAGCCCTGCCTTCCTTCGTACCCACCGCCTGGCCCAGCACCCCCGTCCAGAGGCAGAGGTGGAAGAGCCAGATGACCCTACCAAGACCCACCGCTGTGGGAAGTGCAACCGGGGCTTTGAGACCGAGTCTGAGCTAATAATGCACCAAGAGAACCACGCCGGTGACCAGCACTGCAACGGCAGCGCCTCGCCCGCCAAGAAGCGTGGACGGCCCTTTAAAGCAGAGGACTCAACGGTtggagggaagaagagaaagaagaagGAAGAGGGCACAGAGGAGGCTGAGACTGGAAACAATGCAGAGGAGGCTGCAGCAGCTCCGGCTGAGACCAAGGGGAAAGCAGGAGGCGGTGGCAGACGGGGCCGTCCTAAAGCAGCAGTAGGCGAGGAGGCCAGAGAAGACGACAGTGAAGCCCCAGCAGAGGAGAAGAAGCCCAAAGCGGCTCCCGCTCCACCCAAGCAACACCCCTGCCCTGAGTGTGAGCTCACGTTCCCTGCCCTGGCCCAGCTCCGCGCCCACAAGAAGGAAAAGCACATCCCACGTAAGGCCCACCCCTGCAAGGAGTGTGAGGAGAGCTTTGCCCGTCCCGAGCAGCTAGAAGCCCACAAGAACCGGGCACACATCAAGGGGCGTTATGCCTGCCCTACCTGTGGCAAGAGCTTTGGCCGAGAGAGCAACCTGAAGGGCCACCAGCAGAGCAGCcacccagaggaggaggagaagcaagAGGCAGCGGGCCGCAGCAAGAGATAATTCAGAATGGGGAAGGGGGGATTATCTGTGAAGTCATTGGGGGGACGAAGAATCAGGGATTTTTAAGAATTTGAATTTTGTCAAGGGTTTTTGTTGGTTTGAGGTTGGGTGTGAAATTTAGATCCTAAGTTTGAAGTGTTTTTAGCATGTGAGAAAGACAGGTGAGGAATTCTTTGAAGGATTTTTAACAGGTGAGCTAAGGCGTCCCACTGATAGTTCAGCATTTGCCATTTCTGGATTGTGTTAGGATGTTCAAGGCACACATCACACTTGGAGTGACTGACTTACTAACCAAAAGAATGTAAGCTGTTAAATCCATCTGTTATACACCTGTCTTATCTGGACAAGAACAACAATATTTAGTTTTGGGCATCATGTTTGTTCCATTTGATTAATATCTTTAAATTATTATCATGATAATGGAGTTACACCTCtaaaaaataatgtaaaaacagtATGTAAAATGCTTTTCATGCTGTCTGACAAATGGAGCTTTTCTTGTTTTATGATTTTTATATTGCTAAGTACGTGTTCTGTAGTAGCAGATGAAATGCAACAACTGTGCATTTTATAAAACCTGTTGGGGATATTTACTTTTTGAGAGAGCTTCTTGTGATAAGTGAACATGGATTGGAATGTTTGGGAGTTACATAACGTCTCATAGAAATTGCATCTATTTATATACGGTTTCTGGTGCATTGTAATGCCGAGCTGTTTCTATTATGATTAACTTCTAAATTATACTGCTATTAAATGCGCAGGGTATAAAAAAAGATCAATGTATTTATCCTCTTAAGTTAGTTTGGTTTAGGCCCAATGGTTCTTCTTTGGTTTCATGCATGGATTTTAACATGTCATCCTAAACAATGGTTGTAATGAAGACTAATAGACTCAAATTAAGATAATCCTGCCACCAGCTACACCTTGTCACCTTTTATTTTGGATTTGTTATACTTAATTTAAATGTCATAGATATTCTAATGAACTTTCCATAAATGATTTGCTGACATTTTGGCATGATGACGAAATGACCAGAGGCCTAAATGGACATGTTCTTGTTTTCATCATTCTCCCCATGTAACATGCCTGGACACTGCCAATATGTAATAAAGGTGCCCCAAGGGCTGCTACAGAATGACACA
>XM_021591718.2
ACACGTGTCTGCATTTGCTCAGGTTGTTAGGGGAAAGAGCAGAGACTCATTCaaaatggattttttttgttgaagACTCAAAAATATTGCCTTTGTCACGTGACACGGGTCAATTCAATTTCCACATTAACTTCACTGTACTGGAAGCGGTTTGAGGACATCCAGTCTTCCACGATGGACTCAGACATACTGAATATAGAGGAAATAGTGATGGGGAAGGGGCCACCAGATCCCCCTGCAGAACTGACCACTGAGAAACCAGCAGAACACTACAAACCCATTGCCTCCTTCAAAGCACCACCTCCACCCACCATTCAACCATATCAGCATGAGAACCTGCAGTGTTTCCAGTGCTTCATCACCTTCTGTAACTCCAAAGCCAAGGAGAGGCACATGAAGAAGAGCCATCGTGAGGAGTACAAGcagcagctccagcagGGAGATACTCTGTTCACCTGCTATGTGTGTGACCGTACCTTTCCGTCCTCGGAGGAGCTGACCCAGCACCAGGGCTCACACAATAAGGAGGACAAGCCCTTCAAGTGTCCCCACTGCCAGGAGAGCTTCCGCACCTTCTCTGAGCTGACGACCCACAGGAGACAGGTCTGTCCAGAGAGGCAATTTGTGTGTAAGGACTGCAGTGAGACCTTCCGCAGCCCTGCCTTCCTTCGTACCCACCGCCTGGCCCAGCACCCCCGTCCAGAGGCAGAGGTGGAAGAGCCAGATGACCCTACCAAGACCCACCGCTGTGGGAAGTGCAACCGGGGCTTTGAGACCGAGTCTGAGCTAATAATGCACCAAGAGAACCACGCCGGTGACCAGCACTGCAACGGCAGCGCCTCGCCCGCCAAGAAGCGTGGACGGCCCTTTAAAGCAGAGGACTCAACGGTtggagggaagaagagaaagaagaagGAAGAGGGCACAGAGGAGGCTGAGACTGGAAACAATGCAGAGGAGGCTGCAGCAGCTCCGGCTGAGACCAAGGGGAAAGCAGGAGGCGGTGGCAGACGGGGCCGTCCTAAAGCAGCAGTAGGCGAGGAGGCCAGAGAAGACGACAGTGAAGCCCCAGCAGAGGAGAAGAAGCCCAAAGCGGCTCCCGCTCCACCCAAGCAACACCCCTGCCCTGAGTGTGAGCTCACGTTCCCTGCCCTGGCCCAGCTCCGCGCCCACAAGAAGGAAAAGCACATCCCACGTAAGGCCCACCCCTGCAAGGAGTGTGAGGAGAGCTTTGCCCGTCCCGAGCAGCTAGAAGCCCACAAGAACCGGGCACACATCAAGGGGCGTTATGCCTGCCCTACCTGTGGCAAGAGCTTTGGCCGAGAGAGCAACCTGAAGGGCCACCAGCAGAGCAGCcacccagaggaggaggagaagcaagAGGCAGCGGGCCGCAGCAAGAGATAATTCAGAATGGGGAAGGGGGGATTATCTGTGAAGTCATTGGGGGGACGAAGAATCAGGGATTTTTAAGAATTTGAATTTTGTCAAGGGTTTTTGTTGGTTTGAGGTTGGGTGTGAAATTTAGATCCTAAGTTTGAAGTGTTTTTAGCATGTGAGAAAGACAGGTGAGGAATTCTTTGAAGGATTTTTAACAGGTGAGCTAAGGCGTCCCACTGATAGTTCAGCATTTGCCATTTCTGGATTGTGTTAGGATGTTCAAGGCACACATCACACTTGGAGTGACTGACTTACTAACCAAAAGAATGTAAGCTGTTAAATCCATCTGTTATACACCTGTCTTATCTGGACAAGAACAACAATATTTAGTTTTGGGCATCATGTTTGTTCCATTTGATTAATATCTTTAAATTATTATCATGATAATGGAGTTACACCTCtaaaaaataatgtaaaaacagtATGTAAAATGCTTTTCATGCTGTCTGACAAATGGAGCTTTTCTTGTTTTATGATTTTTATATTGCTAAGTACGTGTTCTGTAGTAGCAGATGAAATGCAACAACTGTGCATTTTATAAAACCTGTTGGGGATATTTACTTTTTGAGAGAGCTTCTTGTGATAAGTGAACATGGATTGGAATGTTTGGGAGTTACATAACGTCTCATAGAAATTGCATCTATTTATATACGGTTTCTGGTGCATTGTAATGCCGAGCTGTTTCTATTATGATTAACTTCTAAATTATACTGCTATTAAATGCGCAGGGTATAAAAAAAGATCAATGTATTTATCCTCTTAAGTTAGTTTGGTTTAGGCCCAATGGTTCTTCTTTGGTTTCATGCATGGATTTTAACATGTCATCCTAAACAATGGTTGTAATGAAGACTAATAGACTCAAATTAAGATAATCCTGCCACCAGCTACACCTTGTCACCTTTTATTTTGGATTTGTTATACTTAATTTAAATGTCATAGATATTCTAATGAACTTTCCATAAATGATTTGCTGACATTTTGGCATGATGACGAAATGACCAGAGGCCTAAATGGACATGTTCTTGTTTTCATCATTCTCCCCATGTAACATGCCTGGACACTGCCAATATGTAATAAAGGTGCCCCAAGGGCTGCTACAGAATGACACA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591719.2 False 2658 mRNA 0.47 5 13931847 13940405
XM_021591718.2 True 2549 mRNA 0.47 5 13931847 13940558

Neighbor

gene id symbol gene type direction distance location
wu:fe05a04 LOC106578221 coding downstream 3986 13909746 ~ 13927861 (-)
LOC110510306 LOC106578229 coding downstream 22473 13906345 ~ 13909374 (-)
LOC110510354 LOC106578237 coding downstream 29336 13886548 ~ 13902511 (-)
LOC110510240 LOC106577561 coding downstream 48288 13743533 ~ 13883559 (-)
rs19 LOC100689943 coding downstream 207955 13718244 ~ 13723892 (-)
LOC110510265 LOC106578191 coding upstream 146 13940704 ~ 13950382 (-)
si:ch211-261d7.6 LOC106578166 coding upstream 23291 13963849 ~ 13980927 (-)
zgc:66448 LOC106605594 coding upstream 46084 13986642 ~ 13992932 (-)
LOC110538195 LOC106578103 coding upstream 54638 13995196 ~ 14023153 (-)
LOC110510454 LOC106595663 coding upstream 85544 14026102 ~ 14078985 (-)
G226504 NA non-coding downstream 27004 13828830 ~ 13904843 (-)
G226571 NA non-coding downstream 31104 13900363 ~ 13900743 (-)
G226524 NA non-coding downstream 73008 13847444 ~ 13858839 (-)
G226484 NA non-coding downstream 120495 13748139 ~ 13811352 (-)
G226492 NA non-coding downstream 147088 13780831 ~ 13784759 (-)
G226593 NA non-coding upstream 40779 13981337 ~ 13981641 (-)
G226594 NA non-coding upstream 41332 13981890 ~ 13982242 (-)
G226596 NA non-coding upstream 42928 13983486 ~ 13983797 (-)
G226597 NA non-coding upstream 43319 13983877 ~ 13984102 (-)
G226605 NA non-coding upstream 93063 14033621 ~ 14033969 (-)
G226294 LOC100136012 other downstream 587472 13344074 ~ 13344375 (-)
G226224 NA other downstream 707332 13223884 ~ 13224515 (-)
G226187 NA other downstream 751575 13177178 ~ 13180272 (-)
G226124 NA other downstream 864490 13066873 ~ 13067357 (-)
G227060 NA other upstream 488235 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 582622 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 658231 14598789 ~ 14638314 (-)
LOC110512327 LOC106578554 other upstream 1595807 15536363 ~ 15539677 (-)

Expression


Co-expression Network