LOC110510492 (LOC106578091)


Basic Information

Item Value
gene id LOC110510492
gene name LOC106578091
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14084118 ~ 14096104 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591865.2
cgcccctttctcctcccctgaTTCTTATAATTACTATATAGAAAAAATGGGGCTAACTAGCGGGGAACTGGGTGGATACAACACGATTCACAATGTAACATAAGTGGAGCGATATAAAGAATGGGCAGAGAAAGTCTAACCTAATCGGACTTTAGAAATGTGTTGTTGACCAGACAAAGGAAGAGTTCTACAAAACAAGGTGCTCATGAAGAATGGAACTAACCATGTTTAACATTTAACTTTGATAATTGAATACACCCTAATGGATTACGTAAGCTCCGCTGAACCAGATGTTGATGCCTTCATCTGCACAGAATGTGGGGATGGCTTCAGGCGCTACCTTGACTTGGTTAAACACATTACTGTTCATGAACGACTCAGGACTCATGAACAAACAGATTCGTTTTCCCTTGACAGTTTACCCAATGGGTTTCAAGTTCCCCGTGAGTATGCTCTCCACGAAAATGGAACTTTCATAGTGGTTGACAGATCTGGACCATCAAACAACCCTTCTGTCAAGCAGCCATCTTCAACTCCTTCACCTTATCAGAATTCAAAGACCATTGTACTTACAACTAAGCCAGCCAAAACTGATCTACGCGTTAACACAGTATCTCACTCCCAGTGCCGCAGTGTCTCTCCTCTAAAACAGTACCGATGTGAAACATGTGGAAAATCGTTTAACAACCAGCTGAGTTTACAACACCATCAACAGTATCGGAATTTAGAGCAAGGTTATAAGTGCACCTTGTGTTGCAAGATCTTCACAGATAAAGAGAGGCTAAGGGAACATCTCCAAGAACATGCCCATGAAATATTTTACTGCTGTGGTCAGTGTGGAAAACGCTTTCTGAAACAAGAGACCCTGTATGCTCATCAAAAAGAGCAGCATGGATCGCTGGGGCTCAAACAAATGGGGAAGTCAGACAATGGTCAAGAGAACATAATACAGAAAACATATCCCTGTAAGAAGTGTAATCTGTGTTTTTTCTGGCTCTCCGACATGCAGAGCCACTTACTCAGTCATTCCAAAGACAAACCATTATCTGTGAACTCTTCATCCAAAATCGAGCAACAGTCTCAGAAAGATGAGCTATCACATACCATAGAGTACAGCGACAGCACCCCTACCGATGTGACCAAACAGTACAGCAGCGGCACCCCTACTACCGATGTGACCAAACAGTACAGCAGCGGCACCCCTACTACCGATGTGACCAAACAGTACAGCAGCGGCACCCCTACTACCGATGTGACCAAACAATACAGCAGCGGCACCCCTACTACCGATGTGACCAAACAATACAGCAGCGGCACCCCTACTACCGATGTGACCAAACAGTACAGCAGTGACGCAACTGTCGATGTGAAGACCCACAATGGCAAATCTGATTCCAAAACACCATCCTCTTTCAGACCATACCGCTGTGGTTTGTGTGGAGATCGCTTCCAGCAGTTAACAGACTTGAAGGAGCATCATCTTACCCATCAAACACAGGAAGAAATTGACAAGTTAAATAAGGATTCAGAGTCACAAAGAGTTGTAAAAAAGTGGCAAAGGTATACTCGCATTGAGTGCATCGTAACAAAAGCACCTGCAAGGAAGGGAGGAAGGCCCCCACTTTATAAAAAAGGCTCTGGGACAAAATTACATCCATGCAAGCACTGCCACCGTGTATTTAGTCACTCAAGTAGTCTGTCTCGGCACAATAGATCCCACAAGGGGACTCTTCACACTTGTGTTCTCTGTGGGAAACATTTTCCACAACGCTGTGATGTCCGGAGGCATATAGCCATGTATCACAAACCTGAATTAGAGAAGAAGCCAAGTCTTAAGTACTTGGCATTGCATTCTAAACCAGATGGTGGTTCCCAATTGAATTCTGATGTGTTGGAACAGAATGTGTCATCTAAAATAAAACCCAAGAAGTCTTTAGACAGTGTTGTTGCAGAATTGGACAGTGACAATGGTGAAGATCAGCAAACCACATCTACTGGAGAAGTGTCCGCTGCTCCTAAGGTACGGAGGAACTACAAGTGTGACCAATGTGGGAAAAAGTTTGGGTTGCTGTGTGTGTACCAACGGCATTTGCGGTACCACAAAAGGGAACCAGGTAGTGAAATAGTTAAGTGCCCTCACTGTCCAAGTTGCTTCCGGAGTTCTTCTGCTCTAGGACGCCATCTTGAGATTCACCCAAGTCAGTCAAGGGGGGAAATGGACATGGAAGGACGGGCATCTCCCACTGCTGACTCCAATccagacctggactctgaccaAGACAATGTAAAGGATTTAGTGGGTCATGGGGACATTGACGATGTCAAGGGTGGGAATGGTGAAAAAATTGGTCCAGCAGAGGTGCTGTACGAATGCACTGAGTGTACAGAGACTTTTTCCTCCTTGCAGAAGTTTCTGAAGCACCAGAGTTCTCATGGGTCCGATAACCTTGGCTAATGGAAACTATGCATGGTATTTATATCCGGAGGTCCGAACCCTAACTTGAGATCAATGCACATACCACATTGTTGCACTGTTATGCAGACCTCAATTCATGATTTACGAAAGTCTGAGTTACGTGCacatctcaagttaggattctTGCCTTGATGATGGAGCAGTTTAACGAGTGTTTTTaaattataatttattttaacAATGACTTGAGGAACTACAACCAGTATGGTTCTTGGGGTGGGTGGGTCATTCATTCTGAACCAGAGTAGGATGACATTGATGTAGCACTGCAGAGATTGAGATGGTGACTTAAGAACTGGGAATTACTGagattttttaatgtattttctaCAATCATGTGAATTTGAGGTTAGTTTTGTATCAATGTTTTAGATTGTTTTGGTTACTTCAGTTAAACCTTTGACAATACCCCTGGAAATGCCATGGGAATAATGCCTTAATATGCTCTTTATTGAAGCTAGTAGTCGAGCACAATTTGCTAAAGACCCATGGACCCATGCAAACCGTTAAGATGGTCTGCGGTAACAATGACTGTCCATTTTGTAAAgtaatttgaaatgttttttttttttttttacatgtgcaTTTCCATTGGGATTTCACTTTAAAAATATTTAAGATATGATTTATTTGCAATTGCCAAGCCTTTACATCCATGGTGTCTTTCTCAAGATCAGAAAATGTGTCAAGGTGAGATGTTCCCCAACTACCAGACCAGGAATGTTGGTATCATTTTGAAAGGCTTTCTCATGTATCATCTTTTCACTATATTGTGGCCATGTCTCTCAATTCGCAAACTGGTTCTGTTATCTAGATCCGTGGTTCCCAATGAGGGGTACTAGGACCTCTGGGAGTACttagcctatccacagggggtacttgagaagactcatgagaccataggcctactgtaaaatgcacatgagggggtacttcaggggttgtctgggcagagcaaaattcagttggtggtacagtaaccgaaaAAGATTGGGAACCACTGCCCTCGATTTCTGCTGCCAGTCCTCCGGGTGGCCACGGATCTGTTAACGCATGATCATGTTTTTCCTTAGGACACGACAAGGTCCAGTGATTCCAATGCAAGCCACACGTAGCATTGtgatgtaaattagccttttCAAATGGTACTGTTGCTTCCTTTACTGTCTTCCAAACAAATGCATTGGCCCTGATTTTAAATGTTACTTTAATGCCATTAAAGTTGAAAGAAATGTATTTT

Function

NR:

description
zinc finger protein 271-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591865.2 True 3716 mRNA 0.43 2 14084118 14096104

Neighbor

gene id symbol gene type direction distance location
LOC110510454 LOC106595663 coding downstream 5133 14026102 ~ 14078985 (-)
LOC110538195 LOC106578103 coding downstream 60965 13995196 ~ 14023153 (-)
zgc:66448 LOC106605594 coding downstream 91186 13986642 ~ 13992932 (-)
si:ch211-261d7.6 LOC106578166 coding downstream 103191 13963849 ~ 13980927 (-)
LOC110510265 LOC106578191 coding downstream 133736 13940704 ~ 13950382 (-)
fpr1 LOC106605601 coding upstream 3297 14099401 ~ 14102281 (-)
LOC110510806 LOC106578077 coding upstream 52724 14148137 ~ 14192306 (-)
si:dkey-79d12.4 LOC106605603 coding upstream 174549 14270653 ~ 14279142 (-)
LOC110510581 LOC106578340 coding upstream 293094 14389198 ~ 14397283 (-)
LOC110510742 LOC106578317 coding upstream 379578 14475682 ~ 14481655 (-)
G226605 NA non-coding downstream 50149 14033621 ~ 14033969 (-)
G226597 NA non-coding downstream 100016 13983877 ~ 13984102 (-)
G226596 NA non-coding downstream 100321 13983486 ~ 13983797 (-)
G226594 NA non-coding downstream 101876 13981890 ~ 13982242 (-)
G226593 NA non-coding downstream 102477 13981337 ~ 13981641 (-)
G226643 NA non-coding upstream 28959 14125063 ~ 14126065 (-)
G226648 NA non-coding upstream 37186 14133290 ~ 14133632 (-)
G226649 NA non-coding upstream 37980 14134084 ~ 14134378 (-)
G226651 NA non-coding upstream 39391 14135495 ~ 14135725 (-)
wu:fe05a04 LOC106578221 other downstream 156285 13909746 ~ 13927861 (-)
G226294 LOC100136012 other downstream 739743 13344074 ~ 13344375 (-)
G226224 NA other downstream 859603 13223884 ~ 13224515 (-)
G226187 NA other downstream 903846 13177178 ~ 13180272 (-)
G227060 NA other upstream 332689 14428793 ~ 14475166 (-)
psenen LOC106577931 other upstream 427076 14519197 ~ 14524902 (-)
LOC110503689 tm149 other upstream 502685 14598789 ~ 14638314 (-)
LOC110512327 LOC106578554 other upstream 1440261 15536363 ~ 15539677 (-)
G228094 NA other upstream 1504911 15601015 ~ 15601488 (-)

Expression


Co-expression Network