LOC110510806 (LOC106578077)


Basic Information

Item Value
gene id LOC110510806
gene name LOC106578077
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14148137 ~ 14192306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036975413.1
CCTCTtaccctccctccgtctctcgccctcattttctctctctctctccatgctctctcCGCTACACCACCAATACTTTTTTCCCTGGCTGTGGCGTGTTTGTGCTTTAGCGAGTGTACAGCGAAACCAGTTCTGTGCTGATCCAGCGTGTGCTATCCCATATCCAGAGCCAGGAGCAGCGTACCTCTTGCCAACAGCCTGCCTCCACTCTGCTGCCTTTTCTGCTTTGATTTCCCACTGTCTGCTTTTCCACCAGACCTTTTCTTTCTTTAACCCTCTGCTCTCTTCCAAGAATGATCTAGGAAGAGGGGAAAGAAATAAGAGAAAGGTGTCTGTGTGAAGGGGAGATGAGGAggcagaaaaggagagagagaggggagaggactaGAGAAGACTGGAGTTAGGCTGCAACACGAGAGGCAAAGCAacgaggagagggagaaagaagagagcaACAAGGATCGAGGGATGATCGAGGTGGAATCGGGCCGAAAACGCAggaaaagggggggaaatatTGCCAGACTCATCCGACCTCTGCTGTGTGGGGACCGGACCCATCTCCTGTCTTCCTGGTCCTCAGCAGAACAGCCATGAGGTAGAGTCGGACATTTTGGAAACTTGTATCCAGCGACATCTTGCTAAGATGGATCCGAAGGCTTCTCTCTTCACCCTTCCACATCCTCCTTTAACCCTACACGACCATCATGTCCTCTGTCCCCATCTCACCCTACACAGTGTATGACGAGAGGTTACTGACAGCTGCAGACAATTTCATTGCGGCTGCCTTCAAACTGCCTAGAGCTTCTGGATGTTTCCCTCCATGTGGTTTTCAGACTACTGGTTATGTCTACAACTGCATCACCTGTCAGTATGACTCCTGTGAGTTCCCACTTGACTGTCCAAcaAAAAACATCACAGTCATGGAGAACAACCGGACACAGATGAGGTGTGACGTCCCCTTTCCCCTGCCTTATGAAATGAAAGTGGTCTGGAGGTTTGCAGAGGAGATCAGGACCCAGCAGGTGGATCAGTTTGAGGAGGTGACAGTAGGGATAGACCGGCTCTACTCTATCCCCTCAGCTGGTCTGCGACACCAGGGTACATACCAGTGTGAGATCTACTCTGACCAGCGCTCCTTAGTCAGACTTTACTACCACCTCATAGTCATCCCCCAGGTGGTTGTAGGCCACAGTGAGCTGCAGGAGATATTTGATCTGTCACTGCTTCCAGGGGGCCAAATTGTCACTGTGCCTGGTGGATGGTCCCTTGCCCTCCtccgtctcccccctccctctctcctcacggCCTGTCTGacttctctgctgctgctgctcttccTCTCCCTGGGGATTCTGCACTGGTGGTCGATAAAGAAAGAGAAGAGTGATGTGGAGCAAGCTGAAGACGATCCAGATTCAAGgaaatcatctGGAGGGTCATGGCAGGATgagcaggaagggtaccacatgagggaggaggatgtcttccctgtaacgcacagcgctgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgatacaccgccccagaccatgaccatccacctccaaatcgatcccgctccagagtacaggcctctgtgtaacgctcattccttcgacgataaacgcgaatctgaccatcacccctggtgagacaaaactatgACTCTTCAGAGAAGAgctctttttgccagtcctgtctggtccagcgacggtgggtttttGCCCATAGGGACGTTGTTGCCGTTGATGTCTGCTGAGcccctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgtggacagtctgagcactgatgaagggattgtgGGTTCCTGGTGTAatttgggcagttgttgttgcca
>TU259242
TGGTAGTTAGGGGTAGTTAAAACTAGTGGAAGTCCATTTCAGTTGCATTACAATGCGTGTTCTCTGTCCGCATTTCACCTTTGTCCTTCTTGCTGTCTTCATCTGTCATGCCTCACAACACGATTCACGTAAGAACTCAACATCTACTGGTTTCTCTGCATCTCGTACGATTATGAGGTCGTTGTGGTACTAATGACAGTAATGAGAATCACGATCATATGATTACATTTACATAGCACTTCTCACAAGGCCGCAAAGCACTTCACTGTGCGTTGTCATCCCGTCCACAGTGAGTTGAGAACATCAGCTCCATTGGTATCAAAGTGGGTGACTATTGATATGGAATGACTTTGAAACCTTGATGGAGAGGTGGTGATGGGAAGGAGATAGATCCGACCCTCAAActtgcaatacacacacacacaccacatctttCCGTTTAGTCACATTACTGTGGGAGCAGTATGTCTCTCGTTGGGCTGCCAGCTGAGAGCACTCCTCCCAGACGCAGGGCAGGAGGCCTAGACagggtggaggaggaagggatcATTTGAaccagctgccagtggtagtgaTCTCCTGCTTCGTCACACAGAGACCTCCTCAGACCCTGTGTGACCAACTAACAGCCTGGGAACCCTGGCCTGGGTCCCAACATAAACCCAGCCCCTCATATCAGCATCCTCCATCCACATCTCTGCGTCTGGGCTTTCACAGACGGTCAGGGCGTTTGGGGATAGTCACGTCATATATGTCACCTTATCAGATAGTATATATATCACATAGTCCCCCTCCTAAGGCAAGAAGTTAGTGAAGCCAGAAGTCTATAACATGATATCAACCCACATCTAGTGAGGGTGATGAGTAATGGTGATGACATAAACTGCTACCCTTCAGACCCTCACATACTCACCACAAGAATGTTTTGACTCATTTTAATCACCACCCTTGTTGTACTGGCAGTATTGACCGGCACTGGCTATCACCAGTTAGATTGGTTAGATTGATACTTAATACAGGGAAGCTGCCCAAAGTCATCATTTATGcatataataaaaaaaattaaaataaaaattatcctcaatttcgtggtatccaatttttttcccatgGCCTGAGAGTTGATTAGTTAAGCCATGCCACTGCAGAAGCCACTGCAGAAGTCGTAGTAAAACTGCAACAACCTTTCATTCAATAGAATAAAAGAACAGTACAAAAATAACAGGTATCAGAATAAAAAcgtcaataacaacaataacgTCAATGACGTCAATAATAACAAATAGTTGATTTGAGTATGATTTGTcctaataaataaacaaaaaagtaCCAGGCTTGAATACATCTGATTGGGTTTTAAGACCTGTTGTTGTGGACTATAGATACTGTAACTACTCCAGAAGATAACTGTCTGAACTTACTGTTACAGAGACTCACTCAGGTGCAGCCCTGCATCAtgtaacactgactgactgactgactagtagGAATTGTGTTATGATATTATGAGGGGGACTCTGATGATTTTGCTATCAAAAAAGGGGTCCCTGACGCAAAAATGACTTGGGTACCCCTGCCTtagaatataaactcagcaagaaaagaaatgtcctctcactgtcaactgcgtttattttcagaaaacttaacatgtgtaaatatttgtatgaacataacaagattcaacaactgagacataaactgaacaagttccacagacatgtgactaacagaaattgaaaaatgtgtccctgaacaaagggggggtcaaaatcaaaagtaacagtcagtatctggtgtggccaccagctgcattatgtactgcagtgcatctcctcctcatggactgcaccagatttgccagttcttgctgtgagaagttaccccactcttccaccaagtcaCCTGCatgttcctggacatttctggggggaatggccctagccctcaccctccgatccaacaggtcccagacgtgcaacaggtcccagacgtgattgagatccgggctcttcgctggccatggcagaacactgacattcctgtcttgcaggaaatcatctGGAGGGTCATGGCAGGATgagcaggaagggtaccacatgagggaggaggatgtcttccctgtaacgcacagcgctgagattgcctgcaatgacaacaagctcagtccgatgatgctgtgatacaccgccccagaccatgaccatccacctccaaatcgatcccgctccagagtacaggcctctgtgtaacgctcattccttcgacgataaacgcgaatctgaccatcacccctggtgagacaaaactatgACTCTTCAGAGAAGAgctctttttgccagtcctgtctggtccagcgacggtgggtttttGCCCATAGGGACGTTGTTGCCGTTGATGTCTGCTGAGcccctgccttacaacaggcctacaagccctcagtccagcctctctcagcctattgtggacagtctgagcactgatgaagggattgtgGGTTCCTGGTGTAatttgggcagttgttgttgccatcctgtacctctccctcttgttaaacagaaaacccaaacatatggcagaaGATCCACacggtctgccatgagaggtgactgtatagttcccttaaggaaaagcacctttagttatccgttttctctgtgagagcttcccatgtctgaaATACACGcaatcagacacacataactgcaccatatatcacactttcacaaaatgcttgaagacatggctaaaggtcaatcagatttgtgaacatggtccctagctgtgtgttgccgctttccattttgtctgttgtctgtagcttgtgaggtgtggaaacactttgttgcttttatgaattttgtcttgctgctttttgttctatgttgctatgtatgtatgctatgtcttgcttgtcctatgttgctattgtctatattgtaattgtttttaataaccttcccagggactgcggttgaaaattagtcggctggctaaaaccggcacttttactgaaacgttgataaatgtgcactgtccctataaaaatttaaataaataaaataaactcccgcaggtgtgatgtttcggatgtatcgatcctgtgcaggtgttgttacacgtggtctgccactgcgaggacgatcagctgtccatccggtctccctgtagcgctgtcttagacgtctcacagtacggacattgtaatttatttccctggcc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036975413.1 False 1901 mRNA 0.52 11 14148828 14192306
TU259242 True 3222 lncRNA 0.34 2 14148137 14152260

Neighbor

gene id symbol gene type direction distance location
fpr1 LOC106605601 coding downstream 46547 14099401 ~ 14102281 (-)
LOC110510492 LOC106578091 coding downstream 52724 14084118 ~ 14096104 (-)
LOC110510454 LOC106595663 coding downstream 69843 14026102 ~ 14078985 (-)
LOC110538195 LOC106578103 coding downstream 125675 13995196 ~ 14023153 (-)
zgc:66448 LOC106605594 coding downstream 155896 13986642 ~ 13992932 (-)
si:dkey-79d12.4 LOC106605603 coding upstream 78347 14270653 ~ 14279142 (-)
LOC110510581 LOC106578340 coding upstream 196892 14389198 ~ 14397283 (-)
LOC110510742 LOC106578317 coding upstream 283376 14475682 ~ 14481655 (-)
antol lin37 coding upstream 316100 14508406 ~ 14511632 (-)
psenen LOC106577931 coding upstream 326891 14519197 ~ 14524902 (-)
G226651 NA non-coding downstream 13103 14135495 ~ 14135725 (-)
G226649 NA non-coding downstream 14450 14134084 ~ 14134378 (-)
G226648 NA non-coding downstream 15196 14133290 ~ 14133632 (-)
G226643 NA non-coding downstream 22763 14125063 ~ 14126065 (-)
G226605 NA non-coding downstream 114859 14033621 ~ 14033969 (-)
G226679 NA non-coding upstream 26906 14219212 ~ 14219780 (-)
G226689 NA non-coding upstream 29823 14222129 ~ 14222362 (-)
G226731 NA non-coding upstream 40858 14233164 ~ 14233390 (-)
G226736 NA non-coding upstream 47697 14240003 ~ 14240269 (-)
G226737 NA non-coding upstream 48819 14241125 ~ 14241374 (-)
wu:fe05a04 LOC106578221 other downstream 220995 13909746 ~ 13927861 (-)
G226294 LOC100136012 other downstream 804453 13344074 ~ 13344375 (-)
G226224 NA other downstream 924313 13223884 ~ 13224515 (-)
G226187 NA other downstream 968556 13177178 ~ 13180272 (-)
G227060 NA other upstream 236487 14428793 ~ 14475166 (-)
LOC110503689 tm149 other upstream 406483 14598789 ~ 14638314 (-)
LOC110512327 LOC106578554 other upstream 1344059 15536363 ~ 15539677 (-)
G228094 NA other upstream 1408709 15601015 ~ 15601488 (-)

Expression


Co-expression Network