LOC110510822 (smg9)


Basic Information

Item Value
gene id LOC110510822
gene name smg9
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14278350 ~ 14284963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110510822
CTAGTCAGCTGGCTTCCCAACGAAAGATTTGAGAGATGTACTTCAGCGTTACCGTCTGTTTTTGTTTCCGTTTTGTGGATTTTATCTGGAAAGCAAGTAGCTAATCCTTCATGAAAACCCAATTAATCGCATAACTTGACCACAGTGTGCAACATGTCAGAATCTGGCCACAGTCAACCCGGCATGTATGGACAGGGACGGAGGAGAAGGCAACGCCGAGACAGAGATGTGGGTCCCCCGGGGCAAAACCTCTCTGGTCCCAGTCGAGATCAAGAATATGTCCCCAGAGAACGCAGGGATGCCAGTGAGGAGCTTCCAGGACCACTCCTTCAGAAGACCCCCATCATACTGGCCAAACCCCTTGGAGTACGGTCCAAGCCTTCCAAGAGTGTACCCATCAGTGGAGGCCAGGCTCTGGAGAAGCCCATCATGCTCATCAAGACCAGGGAGGATGGGGGGAAACCAGGGACCCCTCCTGACGTGGCTTCTCCAGCCTCTGGCTCTGGGGCCTCAAAGCTAGAGAGGGAGGGCTAGTGCCCTACCCAACCTGTCTACCAGATCCAAAACAGAGGCATGGGAGCAGCTGCTTCCAGCGGTGCTGTCGACCCTGTGATTGTCCAGACCAAGCTCGCCCTGAGAAGATGAAGCACAGCATCAAGCTGGTGGACGATCAGATGAGCTGGTGGACGATCAGATGACCTGGTGTGACAGCGCCATGGAGTACCTAAGGTACCAGACAGACATGGTGGTAGTGGGAGTCATTGGTCTGCAGGGAACAGGGAAATCCACCATCATGTCTCTCCTGTCTGCTAACGCACCTGAAGAAGACCAAAAggGCTATGTGTTCAGGGCTCAGATTCAGGAGatcaaagagagaggagggaaccagaGCACGGGTATTGACTTCTACATTACCCAGGAAAGAGTCATCTTTTTGGACACACAGCCCATTCTTAGCCCCTCCATTTTGGATCGCCTAATCAACAACGAATGTAAGCTGCCTCCAGAGTACAATCTTCCTCACACCTACGTGGAGATGCAGATCACTGCCGTCCTGTTCACAGTGTGCCACGTGGTCATTTTGATTCAATACTGGTTCACTGACATCAACATCTACAGGTTCCTCCAGACAGCAGAGATGTTAAAGCCCTCCACCCCCTCAGCCAGCCATGACAGCACTGGCTCCTCTGGCACCGAAGAGGGATTAGAGTACTACCCACATCTAGTGTTCCTGCAGAACAAATCTAGTCGTGATGAGTTCTGTCCCAGAAACCTGAAGAATATGCATATGGCAGTGGACAAGCTGATGGCCCACTCCCATCTGAAATATAAAGGCACGTTGTCCATGCTGGACTGTAACATTTTCCCTGGCCTGGACCGCGACTACCTGGAAACAGAGGTCAACATGTTCCTGCTGCCCCTCATGGAGAATGAGGGGGAGGACGCTCTAACCAAAGCAGGGTCCGGGGCcgcccccctcttctctctcctcccgctgTCACACACCATCCTCACAGATAAGAAATGGTTTCACTATGCAGTTCGCATCTGGGGCGGGGTGAAGAAGTCCTCAGCCCTGTCTGAATACAGTTGTCTACCTGCCTAGCAGCACTGTCAACCTGTTATGAATATACTGAAGGAAATGGATGTCCCTGTCCTACATTAGGaccagaagagacagagagagagagctgggtctGGAGATGGACAGTGCCAGTACTATTGGGCTCACAGGTTCAGTCAGTGGTGAAATGAGGTGCTTGATGTTGAGGAGAGGTCCATCTCATTGGGAACATATGGAACTACAGATAGTTCAACTTTGGTGTCTCTGGCTTTGtaacagagggagaaaggggacaGCTGATCAGATTCAGGTGTCAATGTGACAGTAAATAACCTTGCTAAGTGTCAGAAGATTCAGATGGTACAGAAAAGGAATGACTTTGAAAGATACATTCTGACTAACATGATGCAAATGGTGAAAGTAATATTTAGTTGAAGCATACAGTGGTGCTTCATTTTAATTTCAAAATATGTGATTGTCTAAAGTATTTGTTACCGGTTCATCTGAAATGTTATGATGGTTTATTATGTAAAGATGGAGCTGAGATTCAGGACAAGACACTTCTGCAAAAGAATTGTAAAAAATATGATGTAATCATTAACATTAATGAAAGA
>TU259324
TATCTGGAAAGCAAGTAGCTAATCCTTCATGAAAACCCAATTAATCGCATAACTTGACCACAGTGTGCAACATGTCAGAATCTGGCCACAGTCAACCCGGCATGTATGGACAGGGACGGAGGAGAAGGCAACGCCGAGACAGAGATGTGGGTCCCCCGGGGCAAAACCTCTCTGGTCCCAGTCGAGATCAAGAATATGTCCCCAGAGAACGCAGGGATGCCAGTGAGGAGCTTCCAGGACCACTCCTTCAGAAGACCCCCATCATACTGGCCAAACCCCTTGGAGTACGGTCCAAGCCTTCCAAGAGTGTACCCATCAGTGGAGGCCAGGCTCTGGAGAAGCCCATCATGCTCATCAAG
>TU259325
agggGCTATGTGTTCAGGGCTCAGATTCAGGAGatcaaagagagaggagggaaccagaGCACGGGTATTGACTTCTACATTACCCAGGAAAGAGTCATCTTTTTGGACACACAGCCCATTCTTAGCCCCTCCATTTTGGATCGCCTAATCAACAACGAATGTAAGCTGCCTCCAGAGTACAATCTTCCTCACACCTACGTGGAGATGCAGATCACTGCCGTCCTGTTCACAGTGTGCCACGTGGTCATTTTGATTCAATACTGGTTCACTGACATCAACATCTACAGGTTCCTCCAGACAGCAGAGATGTTAAAGCCCTCCACCCCCTCAGCCAGCCATGACAGCACTGGCTCCTCTGGCACCGAAGAGGGATTAGAGTACTACCCACACCTACTCACATAGTGTTCCTGCAGAACAAATCTAGTCGTGATGAGTTCTGTCCCAGAAACCTGAAGAATATGCATATGGCAGTGGACAAGCTGATGGCCCACTCCCATCTGAAATATAAAGGCACGTTGTCCATGCTGGACTGTAACATTTTCCCTGGCCTGGACCGCGACTACCTGGAAACAGAGGTCAACATGTTCCTGCTGCCCCTCATGGAGAATGAGGGGGAGGACGCTCTAACCAAAGCAGGTTTCACTATGCAGTTCGCATCTGGGGCGGGGTGAAGAAGTCCTCAGCCCTGTCTGAATACAGTTGTCTACCTGCCTAGCAGCACTGTCAACCTGTTATGAATATACTGAAGGAAATGGATGTCCCTGTCCTACATTAGGaccagaagagacagagagagagagctgggtctGGAGATGGACAGTGCCAGTACTATTGGGCTCACAGGTTCAGTCAGTGGTGAAATGAGGTGCTTGATGTTGAGGAGAGGTCCATCTCATTGGGAACATATGGAACTACAGATAGTTCAACTTTGGTGTCTCTGGCTTTGtaacagagggagaaaggggacaGCTGATCAGATTCAGGTGTCAATGTGACAGTAAATAACCTTGCTAAGTGTCAGAAGATTCAGATGGTACAGAAAAGGAATGACTTTGAAAGATACATTCTGACTAACATGATGCAAATGGTGAAAGTAATATTTAGTTGAAGCATACAGTGGTGCTTCATTTTAATTTCAAAATATGTGATTGTCTAAAGTATTTGTTACCGGTTCATCTGAAATGTTATGATGGTTTATTATGTAAAGATGGAGCTGAGATTCAGGACAAGACACTTCTGCAAAAGAATTGTAAAAAATATGATGTAATCATTAACATTAATGAAAGATATACTCTGTTATATCTCCCTGTTGATGTAGTAACAttagaatactgtaagaacattCTGAAAGAGTATAAAATCCTTTCTATTCCACAACCTTTCCATTTCAGGCAAGTAATATTGATTAAATCTTAATCTTAACTAGGATTATTTTCAAATCCAgaagcaaaaaaatatttttttgattaCGCAATCATCTCAAAACATCAAATTTGACTGTCATGGTGGTGATTGAATCCTTTAAAAAATAATAGACTTCATGCTGTAGGTTATAGAGATTAAATTGGTATGAATATGCAAAAGGAAGCATAGTATTTTATGTATATATTTGGGCAAGATATAGTTTCCTTGTATATTTAAAAGGCACTTATGAAAAAACatcccatcccccatccctcgaACATAATCAAAACAGTCTCTTTGACAGTATCTCACTAATCGGCCTTCAGAGCCTTCTTCAGTAAGTTTTGCGCATCTTCAGACCATCAATGTTGACCCAGCTGCCTTGGTCAGAATGTTGATGCGTCTTTGCTCATCTCCTTGTTCAGAGGGGACTTGAGGACTGCTTTCAGCTCCTCCACTGGCACATTTGTTCTACCAGCAAGGCTCTGCAGAGACTCATTATTAAGACCAAAAGCCTGATAGTACATTCTGATCTCCCTTACCAAGATGGTTATGTCTACACTAACGGAGTGACCTGAAATTGGTATTGTTGCCCCACAGCCAGATACAAGAGCTGATCCCCATATGTTAGCTTGGAGAGCCTCGTTCTTCCTCTGGTTAGTTTTCAGGCTCATGTTGGGAATGGCTAACAGCAGGACATGCCTCTTGAGAACAGGAAGTTCCTTCTCCATTGTCTCCACCAGTTTGGGGAAGTCATAGAGAGGTACTGAAATTGGAGATGAGGAAGACCTGAGGAGACCACACCATGATACTAGAAGTCCTAAGTTGAGCAAAGCATATAAAATGAAGACCAGTACAACCACAACAGTAACTGTATTTCCACTAACTTGTCCAGTAATAAAAAAAGGGCCACTTTTTAACTTAAGGCTTTATTCTACAccagca

Function

symbol description
smg9 Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Orthologous to human SMG9 (SMG9 nonsense mediated mRNA decay factor).

NR:

description
protein SMG9 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110510822 False 2178 mRNA 0.42 14 14278350 14283901
TU259324 False 359 TUCP 0.38 4 14278432 14279855
TU259325 True 2349 lncRNA 0.42 7 14281074 14284963

Neighbor

gene id symbol gene type direction distance location
LOC110510617 LOC106578046 coding upstream 9736 14226825 ~ 14268614 (+)
LOC110510755 LOC106561134 coding upstream 58534 14204907 ~ 14219816 (+)
LOC110510523 LOC106573797 coding upstream 134412 14140286 ~ 14152666 (+)
LOC110510707 LOC106593417 coding upstream 202831 14073400 ~ 14075519 (+)
LOC110503682 trp-iii coding upstream 274400 14001152 ~ 14003950 (+)
LOC110510848 NA coding downstream 31696 14315597 ~ 14320723 (+)
LOC110510776 LOC106578012 coding downstream 43324 14327225 ~ 14331310 (+)
LOC118964341 NA coding downstream 122220 14406121 ~ 14406958 (+)
LOC110510549 LOC106578340 coding downstream 148039 14431940 ~ 14442914 (+)
LOC110510729 LOC106578340 coding downstream 184192 14468093 ~ 14471031 (+)
G226726 NA non-coding upstream 2408 14275657 ~ 14275942 (+)
G226696 NA non-coding upstream 7329 14270759 ~ 14271021 (+)
G226694 NA non-coding upstream 8051 14270097 ~ 14270299 (+)
G226695 NA non-coding upstream 8464 14269227 ~ 14269886 (+)
G226722 NA non-coding upstream 12746 14265260 ~ 14265604 (+)
G226774 NA non-coding downstream 29454 14313355 ~ 14313624 (+)
G226793 NA non-coding downstream 76603 14360504 ~ 14360778 (+)
G226797 NA non-coding downstream 83558 14367459 ~ 14371078 (+)
G226807 LOC106578340 non-coding downstream 105297 14389198 ~ 14390428 (+)
G225920 NA other upstream 231502 14046586 ~ 14046848 (+)
G225859 LOC106605594 other upstream 286329 13990236 ~ 13992021 (+)
G225710 NA other upstream 632339 13645569 ~ 13646011 (+)
G225672 NA other upstream 727768 13550098 ~ 13550582 (+)
G226791 NA other downstream 124971 14408872 ~ 14410081 (+)
G226941 NA other downstream 419700 14703601 ~ 14703975 (+)
LOC118944476 LOC106605624 other downstream 658249 14942150 ~ 14984145 (+)
LOC110510950 LOC106605624 other downstream 706619 14984771 ~ 14991394 (+)
LOC110510822 smg9 other upstream 1219 14278350 ~ 14284963 (+)

Expression


Co-expression Network