LOC110510848


Basic Information

Item Value
gene id LOC110510848
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14315597 ~ 14320723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051408.1
tacagtttgcaactgcacatggggacatatTTATTCTGTGATTCGTTGTCATTAAAGACTGTTGCTGAAAGGATTCATGCTGTTGCACAAATTATTGAACCAGCTGAGGGGACACTGGTTACCATCAAGTACGCAGGTGGAGGAAGCAAGAGGAAGAGGTTCTTCCTCTCTCAACCTTCTCAGGTACAGTACAACAAGATaatatcctctttctctctggaaaAGTCTTGGACCTCATTAAACTTGTTAATATGCAATTTTCTCAATGCTTATAGGACATAGTAATATTCGTTGGGGCCCCTGATACTGTCATCCGCCAGTTACACACGTGCCCAGGCAGGAACAGTGGAGGACAGTGGGATTGTTAAAGATGCGGTTTTCTTCACTATTTGGCTGGCTGAGGATCAGGTGGAGGTGACTACTTTCACATTTAGACGGATTCAACAATCTGACATCATAAGTACTAGTGCTCCTTCATGCTTCATATCTGAAAAAAATAACATAGGGCAGTGGTTGTCAAACCTCAGGGACACCTTGCCGttacatgtattttatatattacagaaTTACTACAATAGATTAAACTTATCAGCTACTAATCAAGGCCAATACTTGGTGAATTTGTTTAGCTATTTCTGGGCTACTACTACATTGTGAAACATATGGGGGTTGCAGAGAAGTTTGAGAACCACTGAAAAGAATTGTGGTTTTTCAGGAAAATAAACCAACACAAAACTAAGCAGCCTCAAAAGTGTCTACACCCACCAGGTCCCAACCTGCCTCACAAGTGTCTACACCAACCAGGTCCCCACCTGCCTCACAAGTGTCTACACCCACCAGGTCCCCACCTGCCTCACAAGTGTCTACACCCACCTGCCTCACCAGTGTCTACACCCACCAGGTCTCCACCTGCCTCACAAGTGTCTACACTCACCAGGTCCCCACCTGCCTTGGCATCCACTGATGAAGAGTATGCTTGATATTAACCATTCAAAAGTTCTGAATAATTGCGAGATCTATGTTTTGGTTTAATAATGTTtgcttttatgtttttattttaaagaaATTCTCTGAAGACATTGCTCTTCAGGCTGGCTAAAAAAGTGGACAGAGAACACACCCCATTTGCCAATATGGTAAATGTTTCTCAGAGCCAGGTCCTGCCATCCTCGACGCCACCTGCAAGCTAAACATAGTGTTTGTAGACACAAATGTATGGGGAGGAATCCATCTGGTGGTGTACCACTTCAAGAGCTTGCCTGCCTTCTCCTAAAGGAGATCAGAAATAGTTGCTTGTTCACTGGGCAAGAGGACTCCAAATCCCTGGAGCTGAACAGAGATGCAAGCGAGACTGGCCAATACCAGACTTTGGGGGCAATGGTGGCAGTCTGTCTGGTGCAAGCTGGAGCAGCATCACCATTCTTGAGTGAACGGATATTCCGTTTGCTGGCACTACTGCCTAACCCCCCGCCTGGACTGAAGGACATTATGGAGGATACCTTCTGAGACGCACTCAAAAAGATTTACAGAACTGCTGAAGACCCTTGACCTTCTAGAATGTCTGAGGGCACACCCACACATGCTTCGTGAGCTTTTTGTGGCTGGTGTCACAAAGCCATTGACATCTGAAGAGCTGTTCCTACCAAACTCTCCCCGGCGGGTACTAACAGCAGGAGACAGGAGGAACTAGTTCTAATCTGCTGGAGGTCTTCCTCTTAGAGATCGATTGACCCGGGGCACCAGTTACATGTGGAATGGTCCTCCAATTTGTGTCAGGAGCAGAAGAAATACCCCCACTTTCCTTCGACACACAGCCAACATTAGAGTTCCTGCCTGAACACAAGGTCTACCCTGAGGCAAACACTTGCGAGTTGTGATGCGTTTACCCATTCACCAGAATTACGAACAATTCAAGAAGTTCATGGTGGAAGCCATAATTCAAGCCCCAGCATTTGGCTTTACTTAGATCGATAGGTGTCATGCCTTAAGGATAATGGATAACATACATTCTAAAGTGTATTTACCAATTCAACAATGTTATCTCTTTGAGATCATGTCCATTTTTGATGTAGAATATTTTAATACAAAAAGACAATTGAAATGTTAGGTTGATGGATACAATTTAGCTGTTATGCTGTGGGTTCAGTTGAGATGTTTATatgaaatgtgcttttctttaaaacaGCAAGTTGTGGATTAGATGGGCACCCTCAATATTGTCTTTCACAATTCAGAGACTTAACAGTGCTCAAGGTATTTTGCGAAACTGACTCTGCAGTCAATTTGACTTTGTTCAGCACTTTCATTTGTGTAAAATGTTCTGGGAGGGAAaaccaggagctgagacaaaccgCTGGtgggcttgaacaaacaagacgaactggcaacagacacaGAAAGTACAggcataaatacacaggggataatggggaagatgggtgacacctggagggggtggagaccaggacaggtgaaacagatcaaggcGTGACAGAGTGGTGATGCATTTGTTTTATGATGAAAGTATacattattttttattgtgaaaagcACAGCAAAA

Function

NR:

description
PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051408.1 True 2560 mRNA 0.44 4 14315597 14320723

Neighbor

gene id symbol gene type direction distance location
LOC110510822 smg9 coding upstream 31696 14278350 ~ 14284963 (+)
LOC110510617 LOC106578046 coding upstream 46983 14226825 ~ 14268614 (+)
LOC110510755 LOC106561134 coding upstream 95781 14204907 ~ 14219816 (+)
LOC110510523 LOC106573797 coding upstream 171659 14140286 ~ 14152666 (+)
LOC110510707 LOC106593417 coding upstream 240078 14073400 ~ 14075519 (+)
LOC110510776 LOC106578012 coding downstream 6502 14327225 ~ 14331310 (+)
LOC118964341 NA coding downstream 85398 14406121 ~ 14406958 (+)
LOC110510549 LOC106578340 coding downstream 111217 14431940 ~ 14442914 (+)
LOC110510729 LOC106578340 coding downstream 147370 14468093 ~ 14471031 (+)
LOC110510603 LOC106578002 coding downstream 164199 14484922 ~ 14495193 (+)
G226774 NA non-coding upstream 1973 14313355 ~ 14313624 (+)
G226726 NA non-coding upstream 39655 14275657 ~ 14275942 (+)
G226696 NA non-coding upstream 44576 14270759 ~ 14271021 (+)
G226694 NA non-coding upstream 45298 14270097 ~ 14270299 (+)
G226793 NA non-coding downstream 39781 14360504 ~ 14360778 (+)
G226797 NA non-coding downstream 46736 14367459 ~ 14371078 (+)
G226807 LOC106578340 non-coding downstream 68475 14389198 ~ 14390428 (+)
G226845 LOC107675859 non-coding downstream 202458 14523181 ~ 14524514 (+)
G225920 NA other upstream 268749 14046586 ~ 14046848 (+)
LOC110503682 trp-iii other upstream 311671 14001152 ~ 14003950 (+)
G225859 LOC106605594 other upstream 323576 13990236 ~ 13992021 (+)
G225710 NA other upstream 669586 13645569 ~ 13646011 (+)
G226791 NA other downstream 88149 14408872 ~ 14410081 (+)
G226941 NA other downstream 382878 14703601 ~ 14703975 (+)
LOC118944476 LOC106605624 other downstream 621427 14942150 ~ 14984145 (+)
LOC110510950 LOC106605624 other downstream 669797 14984771 ~ 14991394 (+)

Expression


Co-expression Network