LOC110510581 (LOC106578340)


Basic Information

Item Value
gene id LOC110510581
gene name LOC106578340
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14389198 ~ 14397283 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591906.2
CTTTGTCTCTGTAGGAGGGTGGATATGAGACTATAGCAAGAAAGATAAAAGCAAGCAAGTCCAGCACtaagaggaagggatggggattGAAAAATTACCATGGCATTTTCTTACTCACTTCTTTTGGCTTGGAGTGATGGGAGTTGATGCCTCGTCATGGACTGCTGAGGTGCCCAAGTCCGTCTCAGGCCTACGGGGCTCATGCATCGTGATTCCCTGCTCATTCAACTACCCAGAACCAGAGAAGAAGCCCTCCGAATTCACTGGCATCTGGTTCAAAGGCACCCATGATACTATATACCACCCAGACAGCTCCAACATCATCAAAGACTACAGGGGTCGTACAGAGCTAGTGGGAGACCTCCGGCAGAAGAACTGCTCTCTCAGAATCGACCCCCTCAATGACAGTGACAAAGGATCCTTTACTTTCAGGATTGAAATGGAAGACCATAACAAGTATTCATACAAAGAGGACAAGGTCTCCATTACAGTGAGCAGCTCTCCAGACCCCCCCTCTCTGTCAgtgagggaggaggtgaaggtggGGGAAGTGGTTTCTGCCTCCTGCTCTATGTCTCACTCCTGCCCATCTGATTCCCCTCTCCTAACCTGGAGCCACTCCGGAACACCCAGTGTCCAATCACATCAGCTGACCAATGTCCAGTGGGAAGTGACGTCATCCCTGACCTTTAGCCCCAGCAGCACTGATCACAACCAGTCTCTGGTCTGCACAGCAGCATACAGGGGAGGGAAGACAGTGAAAAGTTTGAAAACTCTCAATGTCAAATATGCCCCAGTGGATGTGAAGATTGAGGGAGTGTCCAGTGTGAAGGAAGGAGACTCTGTGGAGCTGAGATGCTTCAGTGACAGTAACCCTGCTGCCCACAGCTACCACTGGCACAACAGTAGAGGACCTCTGCCCACCACTGGACCTACCATCACACTGGAGAATGTGACCAGACTCACTGAAGCCCTCTACTGCACTGCCATCAATAGAGAGGGACAAGGCAACTCCAGCCCACTGAAACTCAATGTAGAGTACCCCCCTGAGATCAAAGTGGGCTCCGCTTGCACTTCAGACATCTCCATGGTAACCTGTCTGTGCATTGTGGACTCGGAGCCCCCCGGCTCCGTGGAGTGGTCTCTTCCAGATGGACCCCTGTCCAACCGGTCCAGTACCAGAGTGGAGAGGCATGGGTCAATTACTATGATGACCCTACAGAGGGCACTAGGCTTCTCCGAGACCATCCACTGCCATGCCAGCAACACACAGGGCAATGCCACCTTGTCCTTCACTGTGTCCACAAATGATAAGATGTCGATGCTGTACGTTTCAATTGGTATTGCTgcattagtggtggtagtaatacTAATTACCATGTCAGCTTGCCTATTGAACAAGAAGGGTGGGAGGAGTCATAGGGACCCGTCAGTAACCTGCAAGCAGGAAGTGCATACAGCCAAGTGTGCTTCCTCAGATCCCTCAACTTCAAGgaaagagcagaCAGACACCAGCAGTGAAATCCACACAAACTACTGCACCAACGATCACGTATATGGAAACATGGAGACTGAAGAGGATGGCGACCCATACGAGTGTGTTGATGGAGACGATGCAGTCTATGCTAATGTATGAACACAACAGAAAGCATGTGGAAGTCAGCTGGCCCAGAGGCAGTGGTACTCAGTTTGTCAAAGGTTCCAGTAAAATATTAACATTTTAACCCAATGTAG
>XM_036975404.1
ACTTTGTCTCTGTAGGAGGGTGGATATGAGACTATAGCAAGAAAGATAAAAGCAAGCAAGTAATTGGATTTTAGACATTGAATGTCTTGATTGTAATGTTAGAAATTCCATGGAGAGTAATTATTTCATTTTTCCTGCAGGTCCAGCACtaagaggaagggatggggattGAAAAATTACCATGGCATTTTCTTACTCACTTCTTTTGGCTTGGAGTGATGGGAGTTGATGCCTCGTCATGGACTGCTGAGGTGCCCAAGTCCGTCTCAGGCCTACGGGGCTCATGCATCGTGATTCCCTGCTCATTCAACTACCCAGAACCAGAGAAGAAGCCCTCCGAATTCACTGGCATCTGGTTCAAAGGCACCCATGATACTATATACCACCCAGACAGCTCCAACATCATCAAAGACTACAGGGGTCGTACAGAGCTAGTGGGAGACCTCCGGCAGAAGAACTGCTCTCTCAGAATCGACCCCCTCAATGACAGTGACAAAGGATCCTTTACTTTCAGGATTGAAATGGAAGACCATAACAAGTATTCATACAAAGAGGACAAGGTCTCCATTACAGTGAGCAGCTCTCCAGACCCCCCCTCTCTGTCAgtgagggaggaggtgaaggtggGGGAAGTGGTTTCTGCCTCCTGCTCTATGTCTCACTCCTGCCCATCTGATTCCCCTCTCCTAACCTGGAGCCACTCCGGAACACCCAGTGTCCAATCACATCAGCTGACCAATGTCCAGTGGGAAGTGACGTCATCCCTGACCTTTAGCCCCAGCAGCACTGATCACAACCAGTCTCTGGTCTGCACAGCAGCATACAGGGGAGGGAAGACAGTGAAAAGTTTGAAAACTCTCAATGTCAAATATGCCCCAGTGGATGTGAAGATTGAGGGAGTGTCCAGTGTGAAGGAAGGAGACTCTGTGGAGCTGAGATGCTTCAGTGACAGTAACCCTGCTGCCCACAGCTACCACTGGCACAACAGTAGAGGACCTCTGCCCACCACTGGACCTACCATCACACTGGAGAATGTGACCAGACTCACTGAAGCCCTCTACTGCACTGCCATCAATAGAGAGGGACAAGGCAACTCCAGCCCACTGAAACTCAATGTAGAGTACCCCCCTGAGATCAAAGTGGGCTCCGCTTGCACTTCAGACATCTCCATGGTAACCTGTCTGTGCATTGTGGACTCGGAGCCCCCCGGCTCCGTGGAGTGGTCTCTTCCAGATGGACCCCTGTCCAACCGGTCCAGTACCAGAGTGGAGAGGCATGGGTCAATTACTATGATGACCCTACAGAGGGCACTAGGCTTCTCCGAGACCATCCACTGCCATGCCAGCAACACACAGGGCAATGCCACCTTGTCCTTCACTGTGTCCACAAATGATAAGATGTCGATGCTGTACGTTTCAATTGGTATTGCTgcattagtggtggtagtaatacTAATTACCATGTCAGCTTGCCTATTGAACAAGAAGGGTGGGAGGAGTCATAGGGACCCGTCAGTAACCTGCAAGCAGGAAGTGCATACAGCCAAGTGTGCTTCCTCAGATCCCTCAACTTCAAGgaaagagcagaCAGACACCAGCAGTGAAATCCACACAAACTACTGCACCAACGATCACGTATATGGAAACATGGAGACTGAAGAGGATGGCGACCCATACGAGTGTGTTGATGGAGACGATGCAGTCTATGCTAATGTATGAACACAACAGAAAGCATGTGGAAGTCAGCTGGCCCAGAGGCAGTGGTACTCAGTTTGTCAAAGGTTCCAGTAAAATATTAACATTTTAACCCAATGTAG

Function

NR:

description
sialoadhesin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591906.2 False 1734 mRNA 0.50 10 14389198 14397282
XM_036975404.1 True 1816 mRNA 0.49 9 14389198 14397283

Neighbor

gene id symbol gene type direction distance location
si:dkey-79d12.4 LOC106605603 coding downstream 110056 14270653 ~ 14279142 (-)
LOC110510806 LOC106578077 coding downstream 196892 14148137 ~ 14192306 (-)
fpr1 LOC106605601 coding downstream 286917 14099401 ~ 14102281 (-)
LOC110510492 LOC106578091 coding downstream 293094 14084118 ~ 14096104 (-)
LOC110510454 LOC106595663 coding downstream 310213 14026102 ~ 14078985 (-)
LOC110510742 LOC106578317 coding upstream 78399 14475682 ~ 14481655 (-)
antol lin37 coding upstream 111123 14508406 ~ 14511632 (-)
psenen LOC106577931 coding upstream 121914 14519197 ~ 14524902 (-)
LOC110503689 tm149 coding upstream 203619 14598789 ~ 14638314 (-)
LOC110510719 LOC106577908 coding upstream 242486 14639769 ~ 14642909 (-)
G227008 NA non-coding downstream 5287 14377464 ~ 14383911 (-)
G227011 NA non-coding downstream 7248 14358176 ~ 14381950 (-)
G227017 NA non-coding downstream 67972 14320720 ~ 14321226 (-)
G227014 NA non-coding downstream 71933 14316966 ~ 14317265 (-)
G227013 NA non-coding downstream 72270 14316671 ~ 14316928 (-)
G227064 NA non-coding upstream 8618 14405901 ~ 14406150 (-)
G227015 NA non-coding upstream 11819 14409102 ~ 14410080 (-)
G227065 LOC106577515 non-coding upstream 17777 14415060 ~ 14416878 (-)
G227068 NA non-coding upstream 27180 14424463 ~ 14429445 (-)
G227094 NA non-coding upstream 99510 14496793 ~ 14498854 (-)
LOC110538195 LOC106578103 other downstream 387390 13995196 ~ 14023153 (-)
wu:fe05a04 LOC106578221 other downstream 461365 13909746 ~ 13927861 (-)
G226294 LOC100136012 other downstream 1044823 13344074 ~ 13344375 (-)
G226224 NA other downstream 1164683 13223884 ~ 13224515 (-)
G226187 NA other downstream 1208926 13177178 ~ 13180272 (-)
G227060 NA other upstream 31510 14428793 ~ 14475166 (-)
LOC110512327 LOC106578554 other upstream 1139082 15536363 ~ 15539677 (-)
G228094 NA other upstream 1203732 15601015 ~ 15601488 (-)

Expression


Co-expression Network