LOC110510549 (LOC106578340)


Basic Information

Item Value
gene id LOC110510549
gene name LOC106578340
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14431940 ~ 14442914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591895.2
CAGAAATGCGACACCCATAGGGTTTTTGATAGTGTTAGCATCAAAGGGGCAGGCTACACTCAGGAATGCAGTGAAGGTTCTACAGCATTTGTGTTCAGCACATTATTTGCTTGTGATCTGTTAATTACTCACTAACATTTGACAATTTATCATGTTAATGGTAATATTTAGTTGATGCATTCAGGTACTATAACCACTACTGTATGTATGAGGTCCTACAGCTAGACCACTTGTTACTTCCTGGACTGAGTCACTGCTCAACTTGATTAGAAAAGCCATACCTGACAAGCGAGGGAGGGGCGCTCCATGTTGAACCAACACTTTCTCACCATACACATGTCTACTGGAAGACCAGTAATTGTTATAAGTCTCTGAAGGAGAGTGGTTATCTGACATGAGAAAGAAAGATTCAACTATGCAAGTCCTGCACAAAGAGGAGGGGATGCGGAGTGAAACATTAATATGGCCTTTTCTTATTCATTGCATTTGGCTTGGAGTGATGGGAGTTGAAGCCTCGTCATGGACTGCTGAGGTGCCCAGCTCAGTATCCGGCCTGCAGGGCTCATGCATAGTGATACCCTGCTCATTCAACTACCCAGAACCAGAGAAGAAGCCCTCCAAATTCACTGGCATCTGGTTCAAAGGCACCCATGATACTATATACCACCCAGACAGCTCCAACATCATCAAAGACTACAGGGGTCGTACAGAGCTGGTGGGAGACCTCCGGCAGAAGAACTGCTCTCTCAGAATCGACCCCCTCCATCGCAGTGACAAAGGACCTTTTCATTTCAGGGTTGAAATTAAAGACCAAAACAAGTATTCCTACATGCATGACACGGTCTCCATTGCAGTGAGCAGCTCTCCAGACCCCCCCTCTCTGTCAGTGAGGGAGGAGGTGAAGTTGGGGGTGGAGCTGTCTGCCTCCTGCTCTGTGTCTCACTCCTGTCCATCTgattcccctctcctcacctggaGCCACTCCGGAACACCCAGTGTCCAATCACAGCAGCTGACCAACGGCCAGTGGAAAGTGACATCATCCCTGACCTTTACCCCCAGCATCACTGATCACAACCAGTCTCTGGTCTGCACAGCAGAACACAGGGGAGTGAAGCcagtgaaaatgtccaaaacTCTCAATGTCAAATATGCCCCAGTGGATGTGAAGATTGAGGGAGTGTCCAGTGTGAAGGAGGGAGACTCTGTGGAGCTGAGATGCTTCAGTGACAGTAACCCTGCTGCCCACAGTTACCGCTGGCACAACAGCAGAGGACCTCTGCCAACCACTGGACCTACCATCACACTGGAGAATGTGACCAGACTCACTGAAGCCCTCTACTGCACTGCCATCAACACAGAGGGACAAGGCCACTCCAGCTCACTGAAGCTCAATGTAGAGTACCCCCCTGAGATCAAAGTGGGCTCCGCCTGCACTTCAGACGTCTCCACGGTAACCTGTCTGTGCATTGTGGACTCGGAGCCCCCCGGCACCGTGGAGTGGTCTCTTCCAGATGGACCCCTGCCCACCTTGCCCAGTACCAGAGTGGAGAGGCATGGGTCAATTACTATGGTGACCCTACAGAGGGCACTAGGCTTCTCCGAGACCGTCCACTGCCATGCCAGCAACACACAGGGCAATGCCACCTTGTCCTTCACTGTGTCCACAAATGATAAGAAGTTGATGCTGTACGTTTCAATTGGTATTGCTgcattagtggtggtagtaatacTAATTTCCATGTCAGCTTGCCTATTGAACAAGAAGGGTAGGAGGAGTCGTAGTGACCAGCCAGTAACCAGCAAGCAGGACGTGGACACAGCCAAGGGTGCTTTTTCACATCCCTCACCATCAAGgaaagagcagaAAGACACCAGCAGTGAAATCCACACAAACTATTACACCAACGATCAGCTATATGGAAACATggagGCTGAAGAGGATGGCGACCCATACGAGTGTGTTGATGGAGACGATGCAGTCTATGCTAATGTATGAACACAACAGGAAGCATGTGGAAGTCAGCTGGCCCAGAGGCAGTGGTACTCAGTCTGTCAAAGGTTCCAGTAAAATATTAACATTTTAAGTCAATGTAGCAGAACAGCTGACTGCTTATATTTGTTAGCTTTATGTTGCTCCATGGTTCTAAAGGCTAAAGAAAATGGCACAATCTTATTTGGGTTGTGGGTTTGTGTTATGGCTTTtacaagtattttttttaaattatctaTGGCTTA

Function

NR:

description
myelin-associated glycoprotein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591895.2 True 2238 mRNA 0.48 11 14431940 14442914

Neighbor

gene id symbol gene type direction distance location
LOC118964341 NA coding upstream 24982 14406121 ~ 14406958 (+)
LOC110510776 LOC106578012 coding upstream 100630 14327225 ~ 14331310 (+)
LOC110510848 NA coding upstream 111217 14315597 ~ 14320723 (+)
LOC110510822 smg9 coding upstream 148039 14278350 ~ 14284963 (+)
LOC110510617 LOC106578046 coding upstream 163326 14226825 ~ 14268614 (+)
LOC110510729 LOC106578340 coding downstream 25179 14468093 ~ 14471031 (+)
LOC110510603 LOC106578002 coding downstream 42008 14484922 ~ 14495193 (+)
LOC110510592 hsp70-3 coding downstream 52430 14495344 ~ 14498631 (+)
LOC110510788 ctrl coding downstream 57545 14500459 ~ 14501779 (+)
si:dkey-42l23.2 cml1 coding downstream 63287 14506201 ~ 14508126 (+)
G226807 LOC106578340 non-coding upstream 42099 14389198 ~ 14390428 (+)
G226797 NA non-coding upstream 60862 14367459 ~ 14371078 (+)
G226793 NA non-coding upstream 71162 14360504 ~ 14360778 (+)
G226774 NA non-coding upstream 118316 14313355 ~ 14313624 (+)
G226845 LOC107675859 non-coding downstream 80267 14523181 ~ 14524514 (+)
G226889 LOC106577926 non-coding downstream 176026 14618940 ~ 14623217 (+)
G226931 NA non-coding downstream 243290 14686204 ~ 14686513 (+)
G226935 NA non-coding downstream 246736 14689650 ~ 14689945 (+)
G226791 NA other upstream 21859 14408872 ~ 14410081 (+)
G225920 NA other upstream 385092 14046586 ~ 14046848 (+)
LOC110503682 trp-iii other upstream 428014 14001152 ~ 14003950 (+)
G226941 NA other downstream 260687 14703601 ~ 14703975 (+)
LOC118944476 LOC106605624 other downstream 499236 14942150 ~ 14984145 (+)
LOC110510950 LOC106605624 other downstream 547606 14984771 ~ 14991394 (+)
G227405 NA other downstream 554245 14997159 ~ 14998075 (+)
LOC110511049 LOC106605627 other downstream 630230 15072005 ~ 15095913 (+)

Expression


Co-expression Network