LOC110510742 (LOC106578317)


Basic Information

Item Value
gene id LOC110510742
gene name LOC106578317
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 14475682 ~ 14481655 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591983.2
aaagaaGAAAcaatatggttctcagaacattatgtgctagctgtgTCTCAAGTAATTAGCCAACTTTCAGTTTTCACATTTACACTAAACTTCCTCAATTTGTATTGTTCAACCGCCATCATTGTTAAGTAACAGGAAATATACATGCAATACTTTTGACACCACTCTCGTTATAACTGCTTGTCACTCATTTTATTGGAAGCAGTTGGCTTTTAAGACATGTGCCGGTGCCATGGTCACTGCTGGTGTTTTCCTTGGACCTGTAGCCTCATGTTTTGGCACCTCTTTTCACAACACAATGAGCCCATTGATGTGGATTGTGATGATGCTCATTTTGTCTCAGGCCTCTGGCACTAGTGGTGTGGTTTGGAAAGCTGATTACCCGAAAGTTGTTTTTACCAAATTGGGAGAAGATGTGACCATACCATGCAATGTTACCTATCCCCGGTCCCAATCTAAAGGGCCTATCCAAGCATACTGGAAACGCCAGGGAAATACTCAACTAAACATCAATGATAACGACAGGAATGAATTCCTCTATCACCCCAACAACACATTCGTCATCAAGAGTTTTCAAACCAGGACCAACCTGATAGGAAATATCACCAAGGGAAACTGCTCCCTGAAGATCAATATAATTCAACATGGCGACATTGGGCACTACTACTTGAGAATTGCCACTGGAGCCGACAACTATAGTTTTAAAATAGATCTTGTCTCCATTCAAATATCTGGAACCTCCGGGACTATTTCAACCATACCAAAGGACATGTCAAACACAGTTGATTCCACAACTACAGTCCCACTAGCCACCACAGAATACGCGCTATCCACGGCCACATATATTGCCACCACGGTCCCAGTGGTTGCAGTTCTACTGGTTGCTGTATTGGGGATTGTTTGGTTCTTCATGTACAGGAAAAGGTCCAGGGGTGTCACTAAGCAAGAGTCTGGATATTATGCTAATTTCACCATGACAACTCCAACGACCAAACCTGAAAGAGTCAAAACTACAAAGAAGAAAGATGACACCCAAGTTCCTCCTCCAAAGGTCATTGATGAGCCCGTCTATGGCAACGTCCAGGGTCCAGACGATCCGATGGACAGTATGGATCAAATGGACAGTGTATATGCAAATGTAGATCATACAAAACAGTGATGAGGCTGCATCTCAGATATCAGCACTGCTTAATAatgcgaatgtgtgtgtgtgtgtgtttttatcttGATTGTTTTCTTGTCAAAAGGCAGCTTACAGTGTCAGCCCTCATTTCTAGTATCCTGTTTGACTTTCACTTGGTTAGACAATAATATGTGCAGTTTGTTTGTTAAATGTAATATACATAATTCAGTATGTAACTATTTTTTAAAGGACTGGCTTTCAAATAAACATACTTACTGAGATGATATGC

Function

NR:

description
sialic acid-binding Ig-like lectin 12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591983.2 True 1412 mRNA 0.41 9 14475682 14481655

Neighbor

gene id symbol gene type direction distance location
LOC110510581 LOC106578340 coding downstream 78399 14389198 ~ 14397283 (-)
si:dkey-79d12.4 LOC106605603 coding downstream 196540 14270653 ~ 14279142 (-)
LOC110510806 LOC106578077 coding downstream 283376 14148137 ~ 14192306 (-)
fpr1 LOC106605601 coding downstream 373401 14099401 ~ 14102281 (-)
LOC110510492 LOC106578091 coding downstream 379578 14084118 ~ 14096104 (-)
antol lin37 coding upstream 26751 14508406 ~ 14511632 (-)
psenen LOC106577931 coding upstream 37542 14519197 ~ 14524902 (-)
LOC110503689 tm149 coding upstream 119247 14598789 ~ 14638314 (-)
LOC110510719 LOC106577908 coding upstream 158114 14639769 ~ 14642909 (-)
zbtb32 LOC106577891 coding upstream 174209 14655864 ~ 14667500 (-)
G227068 NA non-coding downstream 46237 14424463 ~ 14429445 (-)
G227065 LOC106577515 non-coding downstream 58804 14415060 ~ 14416878 (-)
G227015 NA non-coding downstream 65602 14409102 ~ 14410080 (-)
G227064 NA non-coding downstream 69532 14405901 ~ 14406150 (-)
G227008 NA non-coding downstream 91771 14377464 ~ 14383911 (-)
G227094 NA non-coding upstream 15138 14496793 ~ 14498854 (-)
G227162 LOC106577926 non-coding upstream 137284 14618939 ~ 14623213 (-)
G227163 NA non-coding upstream 138613 14620268 ~ 14625116 (-)
G227207 NA non-coding upstream 232618 14714273 ~ 14714833 (-)
G227060 NA other downstream 516 14428793 ~ 14475166 (-)
LOC110538195 LOC106578103 other downstream 473874 13995196 ~ 14023153 (-)
wu:fe05a04 LOC106578221 other downstream 547849 13909746 ~ 13927861 (-)
G226294 LOC100136012 other downstream 1131307 13344074 ~ 13344375 (-)
G226224 NA other downstream 1251167 13223884 ~ 13224515 (-)
LOC110512327 LOC106578554 other upstream 1054710 15536363 ~ 15539677 (-)
G228094 NA other upstream 1119360 15601015 ~ 15601488 (-)
G228098 fbrl other upstream 1224579 15706234 ~ 15708265 (-)

Expression


Co-expression Network